BAC Information

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BAC

Clone NameB6Ng01-046N12
Chromosome17 (Build37)
Map Location 31,508,676 - 31,654,829
singlet/doubletdoublet
Overlap genePde9a, Wdr4
Upstream geneBtbd9, EG623169, Glo1, LOC666942, 1700097N02Rik, Dnahc8, Glp1r, Umodl1, Abcg1, Tff3, Tff2, LOC100042904, Tff1, Tmprss3, Ubash3a, LOC100042906, Tsga2, EG667056, Slc37a1
Downstream gene1500032D16Rik, Pknox1, Cbs, LOC623242, U2af1, Cryaa, Snf1lk, Hsf2bp, Rrp1b, LOC435518, Notch3, Pdxk-ps, Abhd9, Brd4, LOC100043434, LOC100043433, Akap8, Akap8l, Wiz, A430107D22Rik, Pglyrp2, 4732474A20Rik, EG208285
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-046N12.bB6Ng01-046N12.g
ACCDH871885DH871886
length1,095222
definitionDH871885|Mus musculus domesticus DNA, BAC clone: B6Ng01-046N12, 5' end.DH871886|Mus musculus domesticus DNA, BAC clone: B6Ng01-046N12, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(31,508,676 - 31,509,781)(31,654,608 - 31,654,829)
sequence
gaattcagctggtccctctgacttagaaaggaaagaaatttggggagcac
atgaacggatcctcaagtcggttgaagcatgcctgggaccctcccagagg
catgagtggttccaacctcttttctttcaaagcaccaaactcccctgcaa
gcagcagccaaacatgccaggtctttgtctgtgctccatgcaggctgaag
agcaatgggctctcagatgtgcatttaaatggccattgcggtcaccctta
ccatgggtttcgaggaggagtggagatttctatttcaatgaccactgggc
cctgaacatcactgagtttcccagagcaactcctgcacaaacatcatggg
tctccagggagacagctttgggaaagaggtgtcaccacacacccaacctc
cactggctgctggtcatcctgcctagttggcagctgatgtggttgaggag
gtgccctatgcccacggagatggaaagatcaaagccatcttgccacccct
cgggatgctggtgccagcatttggaaatgtctgagaggagagatcagctg
aggtctccaggtcctgagacagtttcttgtcattctcttgctctaaagag
gccactcttcagccatctttaaacctatgctccaaggggaagctgcacgc
accatagcaacagtgactgagtgcttttgtaaggaaatggtatcccagga
ctgcacaggacaggaagggaagggcctgcatggacctgttactgtgtggc
aacatttgagaaccactaaagtccttttactctatggtcccattatactg
acaagaatactgaggctcacgattgtggagccattttattaaatgccact
cacaggcagatgagacagttggattcagactatgccccaaccttgcctct
aagtgctgtccaggctccctgaccgtgggcttctttgtgcatatcaactc
aggccactccccagatcccatcccctgtggctctgtcacattctagaaca
gaatcccagtgctgtgagctagtcgacccctccggtcgactgctctctgc
tccagtcctctacactgccaagctctggctgcttctgacttctgc
tctgtagaccaaccatggcctcaaactcaacagagatccaaacgcctctg
cctctctgtgctgggaacaaagatgtgcacaaccaccactcaacccatta
ttttccttacgtgctgctcaaccacagctatgttgttatagcctcagcaa
atggaccaatacacacagagtgtgaccccaagccaggctgatagaggagg
ggttctgtaggtgggggggggt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr17_31508676_31509781
seq2: B6Ng01-046N12.b_45_1139

seq1  GAATTCAGCTGGTCCCTCTGACTTAGAAAGGAAAGAAATTTGGGGAGCAC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAGCTGGTCCCTCTGACTTAGAAAGGAAAGAAATTTGGGGAGCAC  50

seq1  ATGAACGGATCCTCAAGTCGGTTGAAGCATGCCTGGGACCCTCCCAGAGG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGAACGGATCCTCAAGTCGGTTGAAGCATGCCTGGGACCCTCCCAGAGG  100

seq1  CATGAGTGGTTCCAACCTCTTTTCTTTCAAAGCACCAAACTCCCCTGCAA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATGAGTGGTTCCAACCTCTTTTCTTTCAAAGCACCAAACTCCCCTGCAA  150

seq1  GCAGCAGCCAAACATGCCAGGTCTTTGTCTGTGCTCCATGCAGGCTGAAG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAGCAGCCAAACATGCCAGGTCTTTGTCTGTGCTCCATGCAGGCTGAAG  200

seq1  AGCAATGGGCTCTCAGATGTGCATTTAAATGGCCATTGCGGTCACCCTTA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCAATGGGCTCTCAGATGTGCATTTAAATGGCCATTGCGGTCACCCTTA  250

seq1  CCATGGGTTTCGAGGAGGAGTGGAGATTTCTATTTCAATGACCACTGGGC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCATGGGTTTCGAGGAGGAGTGGAGATTTCTATTTCAATGACCACTGGGC  300

seq1  CCTGAACATCACTGAGTTTCCCAGAGCAACTCCTGCACAAACATCATGGG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGAACATCACTGAGTTTCCCAGAGCAACTCCTGCACAAACATCATGGG  350

seq1  TCTCCAGGGAGACAGCTTTGGGAAAGAGGTGTCACCACACACCCAACCTC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCCAGGGAGACAGCTTTGGGAAAGAGGTGTCACCACACACCCAACCTC  400

seq1  CACTGGCTGCTGGTCATCCTGCCTAGTTGGCAGCTGATGTGGTTGAGGAG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACTGGCTGCTGGTCATCCTGCCTAGTTGGCAGCTGATGTGGTTGAGGAG  450

seq1  GTGCCCTATGCCCACGGAGATGGAAAGATCAAAGCCATCTTGCCACCCCT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGCCCTATGCCCACGGAGATGGAAAGATCAAAGCCATCTTGCCACCCCT  500

seq1  CGGGATGCTGGTGCCAGCATTTGGAAATGTCTGAGAGGAGAGATCAGCTG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGGGATGCTGGTGCCAGCATTTGGAAATGTCTGAGAGGAGAGATCAGCTG  550

seq1  AGGTCTCCAGGTCCTGAGACAGTTTCTTGTCATTCTCTTGCTCTAAAGAG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGTCTCCAGGTCCTGAGACAGTTTCTTGTCATTCTCTTGCTCTAAAGAG  600

seq1  GCCACTCTTCAGCCATCTTTAAACCTATGCTCCAAGGGGAAGCTGCACGC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCACTCTTCAGCCATCTTTAAACCTATGCTCCAAGGGGAAGCTGCACGC  650

seq1  ACCATAGCAACAGTGACTGAGTGCTTTTGTAAGGAAATGGTATCCCAGGA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCATAGCAACAGTGACTGAGTGCTTTTGTAAGGAAATGGTATCCCAGGA  700

seq1  CTGCACAGGACAGGAAGGGAAGGGCCTGCATGGACCTGTTACTGTGTGGC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGCACAGGACAGGAAGGGAAGGGCCTGCATGGACCTGTTACTGTGTGGC  750

seq1  AACATTTGAGAACCACTAAAGTCCTTTTACTCTATGGTCCCATTATACTG  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACATTTGAGAACCACTAAAGTCCTTTTACTCTATGGTCCCATTATACTG  800

seq1  ACAAGAATACTGAGGCTCAGGATTGTGGAGCCA-TTTATTAAATGCCACT  849
      ||||||||||||||||||| ||||||||||||| ||||||||||||||||
seq2  ACAAGAATACTGAGGCTCACGATTGTGGAGCCATTTTATTAAATGCCACT  850

seq1  CAGCAGGCAGATGAGACAGTTGGATTCAGACTATGCCCCAACCTTGCCTC  899
      || |||||||||||||||||||||||||||||||||||||||||||||||
seq2  CA-CAGGCAGATGAGACAGTTGGATTCAGACTATGCCCCAACCTTGCCTC  899

seq1  TAAGTGCTGTCCAGGCTCCCTGACCGTGGGCCTTCTTTGTGCATATCAAC  949
      |||||||||||||||||||||||||||||| |||||||||||||||||||
seq2  TAAGTGCTGTCCAGGCTCCCTGACCGTGGG-CTTCTTTGTGCATATCAAC  948

seq1  TCAGGCCACTCCCCAGATTCCCATCCCCCTGTGGCTCTTGTCACA-TCTA  998
      ||||||||||||||||| |||||| |||||||||||| ||||||| ||||
seq2  TCAGGCCACTCCCCAGA-TCCCAT-CCCCTGTGGCTC-TGTCACATTCTA  995

seq1  GAACAGAATCCCAAGTGCTGTGAGCCTAGTCGACCCCTCCCGTCGGCTGC  1048
      |||||||||||| ||||||||||| ||||||||||||||| |||| ||||
seq2  GAACAGAATCCC-AGTGCTGTGAG-CTAGTCGACCCCTCCGGTCGACTGC  1043

seq1  TCTCTGCTCCAGTCCTCTTACACCTGGCCCAGCTCTGGCTGCGTCTGGCC  1098
      ||||||||||||||||| |||||   ||| |||||||||||| |||| | 
seq2  TCTCTGCTCCAGTCCTC-TACAC--TGCCAAGCTCTGGCTGCTTCTGAC-  1089

seq1  TTTTCTGC  1106
        ||||||
seq2  --TTCTGC  1095

seq1: chr17_31654608_31654829
seq2: B6Ng01-046N12.g_74_295 (reverse)

seq1  ACCCCCCCCCACCTACAGAACCCCTCCTCTATCAGCCTGGCTTGGGGTCA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCCCCCCCCACCTACAGAACCCCTCCTCTATCAGCCTGGCTTGGGGTCA  50

seq1  CACTCTGTGTGTATTGGTCCATTTGCTGAGGCTATAACAACATAGCTGTG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACTCTGTGTGTATTGGTCCATTTGCTGAGGCTATAACAACATAGCTGTG  100

seq1  GTTGAGCAGCACGTAAGGAAAATAATGGGTTGAGTGGTGGTTGTGCACAT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTGAGCAGCACGTAAGGAAAATAATGGGTTGAGTGGTGGTTGTGCACAT  150

seq1  CTTTGTTCCCAGCACAGAGAGGCAGAGGCGTTTGGATCTCTGTTGAGTTT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTGTTCCCAGCACAGAGAGGCAGAGGCGTTTGGATCTCTGTTGAGTTT  200

seq1  GAGGCCATGGTTGGTCTACAGA  222
      ||||||||||||||||||||||
seq2  GAGGCCATGGTTGGTCTACAGA  222