BAC Information

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BAC

Clone NameB6Ng01-047F09
Chromosome17 (Build37)
Map Location 82,222,618 - 82,375,247
singlet/doubletdoublet
Overlap geneLOC100043707
Upstream geneC230072F16Rik, LOC675572, EG668830, Tmem178, Thumpd2, LOC100043700, LOC100043704, Slc8a1, EG668832
Downstream geneLOC625467, LOC668836, EG433141, EG625514, LOC100043711
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-047F09.bB6Ng01-047F09.g
ACCDH872229DH872230
length981950
definitionDH872229|Mus musculus domesticus DNA, BAC clone: B6Ng01-047F09, 5' end.DH872230|Mus musculus domesticus DNA, BAC clone: B6Ng01-047F09, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(82,374,258 - 82,375,247)(82,222,618 - 82,223,583)
sequence
gaattccatacatcagtactatttttatactgtttcctctccttctcttt
tcactcttcctttgccccatggctttatctggaatttatgacctcttcgt
ctttaaaatatatatgtagtacatttggttagtagtggtactcctatgga
catgtgtttagggctgaccatttgcgactaaattacttgagaaactttga
tttattgtttttaacttttctcttcaatgctaattaaggtggatatgtgg
taaaaatattggtaaatcaaaaaattaagataaataatgtttaacatggc
ttctcattggtatttctcctccaaaaaaaaaatacccataagattatttg
gaataagtggaagaaaaaaagagcagaatccatctgacacatcatattat
tcctggaggcatcgagttttgtgtatcttcttatttacaatccatagaaa
cttcccatgaattaaattccccatccttatgtgatatggttaggctgctg
aaaccaaagcaatatccattctcttaaaaaatcaggattggagtagaagg
aaatttcaccacactgataagacctctacaaaaaatatacttctattttc
agactgaatgtggaaatgttccaacataagaaaaaagttgggcattcagc
tttatctttcttctgcacatttgcagcagaaagtctaagtttgtataata
gttttataaactaaaataaagaatgcacatcatgaaaagattagttaaat
tgttccaaaatacagtacttcaaatgaacatatgaaatatttatataaga
aatatttagggattttgtttttaagatgatgatttagataattcaggact
aacaaacacacaaatgaggatcctttcctatggggcatgcccacaatctt
ccctctgagccgggtgaaagctgctaagggcgtccaggatttgtacttca
tgctacgagaccatcggatccctggtgagtg
gaattcttgactacagagaatcacatttgcccatgtctttttgccctatg
ttttcatgaggtgtttaaaatgtcctatttattctaaggtccagaagtgt
tccctctgtgcttccaactaacaacgagaagtctgctttcttcaagtgag
gacaaagtttttctccagaattgatcttttggcttctggattttgaattt
cccaatattcagaagtgtatgaaacaaatacctactgtgtcagtcatgat
ggttttgacaatgttttacagctgttccaaggaacttgtttgtgctcttg
ctgattccctctatcagactgcagactgtcctctgtttttctgctcatgc
atgcacagaagttcagcttgatcacatttcccacctttatcaagatgtct
atgaaccttgtctcagttttactttttaggggttcaagtatgctttgatt
gttaagctgccttccaacctggttacacacttcatgtcaccatgatgcag
tattaattttactattttctcattagaatctggcttacccttttattttg
ttaagaattcttgtattcatactcatgatttttggtatcaaaatagtttt
aagtatatagaataagttatggggtgctttttactggaacagtttatgta
agttaaaatgtacagaaatacagtgtcctgaagaaaatgatggtgaagca
aatttctctaatattgtcactgagccaagtgataagtaagttataaattt
catagtattagtgatagaatattctatttagaatttatttttacagtatt
tggttgtattcctagattatcaggctctataatcatatatatatatatat
atatgtaatatttcactttctagctgtctgtttatatatacgctgatttc
atgatatatatagaactcctttagtttataacgtcacaacatgagcatgt

quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr17_82374258_82375247
seq2: B6Ng01-047F09.b_43_1023 (reverse)

seq1  CACTCACCAGTGATCCCGAGGTCCTGTGGCATGGAGAGC--ACTCTGGA-  47
      |||||||||| |||||   ||||  || ||||| ||  |  |  ||||| 
seq2  CACTCACCAGGGATCCGATGGTCTCGTAGCATGAAGTACAAATCCTGGAC  50

seq1  GCCCTTAGCAGCCTCCACTGGGCTCAGAAGGAAGATGGTGGGCATGGCCC  97
      |||||||||||| | |||  |||||||| ||||||| |||||||| ||||
seq2  GCCCTTAGCAGCTTTCACCCGGCTCAGAGGGAAGATTGTGGGCAT-GCCC  99

seq1  CATACGGAATGGATCCCCAATTTGTGTGTTTTGTATATTCCTGAATTATC  147
      |||| |||| |||||| | ||||||||| ||||| || ||||||||||||
seq2  CATA-GGAAAGGATCCTC-ATTTGTGTG-TTTGT-TAGTCCTGAATTATC  145

seq1  TTAAAATCAGCAATCTTAAAAAAAAAACCCTTAAATATTTTCTTAAATAT  197
      |  |||||| | |||||||||| |||| || |||||| ||||||| ||| 
seq2  T--AAATCATC-ATCTTAAAAACAAAATCCCTAAATA-TTTCTTATATAA  191

seq1  ATATTTTATAGGTTCATTTGAAATATTGTATTATTGGAACAATTTTACTT  247
      |||||| ||| ||||||||||| || |||||| |||||||||||| ||| 
seq2  ATATTTCATATGTTCATTTGAAGTACTGTATT-TTGGAACAATTTAACTA  240

seq1  ATCTTTTCATGATGTGCATTCTTTATTTTACTTTACAAAACTAACTATAC  297
      |||||||||||||||||||||||||||||| |||| |||||| | |||||
seq2  ATCTTTTCATGATGTGCATTCTTTATTTTAGTTTATAAAACT-ATTATAC  289

seq1  AAACTTTGACCTTTCTGCTGCAAATGTGCAGAAGAAAGA-AAAGCTGAAT  346
      |||||| || ||||||||||||||||||||||||||||| ||||||||||
seq2  AAACTTAGA-CTTTCTGCTGCAAATGTGCAGAAGAAAGATAAAGCTGAAT  338

seq1  GCCCAACTTTTTTCTTATGTTGGAACATTTCCACATTCAGTCTGAAAATA  396
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCCAACTTTTTTCTTATGTTGGAACATTTCCACATTCAGTCTGAAAATA  388

seq1  GAAGTATATTTTTTGTAGAGGTCTTATCAGTGTGGTGAAATTTCCTTCTA  446
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGTATATTTTTTGTAGAGGTCTTATCAGTGTGGTGAAATTTCCTTCTA  438

seq1  CTCCAATCCTGATTTTTTAAGAGAATGGATATTGCTTTGGTTTCAGCAGC  496
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCCAATCCTGATTTTTTAAGAGAATGGATATTGCTTTGGTTTCAGCAGC  488

seq1  CTAACCATATTACATAAGGATGGGGAATTTAATTCATGGGAAGTTTCTAT  546
      |||||||||| |||||||||||||||||||||||||||||||||||||||
seq2  CTAACCATATCACATAAGGATGGGGAATTTAATTCATGGGAAGTTTCTAT  538

seq1  GGATTGTAAATAAGAAGATACACAAAACTTGATGCCTCCAGGAATAATCT  596
      ||||||||||||||||||||||||||||| |||||||||||||||||| |
seq2  GGATTGTAAATAAGAAGATACACAAAACTCGATGCCTCCAGGAATAATAT  588

seq1  GATGTGTCAGATGGATTCTGCTCTTTTTTTCTTCCACTTATTCCAAATAA  646
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATGTGTCAGATGGATTCTGCTCTTTTTTTCTTCCACTTATTCCAAATAA  638

seq1  TCTTATGGGTATTTTTTTTCTGGAGGAGAAATACCAATGAGAAGCCATGT  696
      ||||||||||||||||||| ||||||||||||||||||||||||||||||
seq2  TCTTATGGGTATTTTTTTTTTGGAGGAGAAATACCAATGAGAAGCCATGT  688

seq1  TAAACATTATTTATCTTAATTTTTTGATTTACCAATATTTTTACCACATA  746
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAACATTATTTATCTTAATTTTTTGATTTACCAATATTTTTACCACATA  738

seq1  TCCACCTTAATTAGCATTGAAGAGAAAAGTTAAAAACAATAAATCAAAGT  796
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCACCTTAATTAGCATTGAAGAGAAAAGTTAAAAACAATAAATCAAAGT  788

seq1  TTCTCAAGTAATTTAGTCGCAAATGGTCAGCCCTAAACACATGTCCATAG  846
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTCAAGTAATTTAGTCGCAAATGGTCAGCCCTAAACACATGTCCATAG  838

seq1  GAGTACCACTACTAACCAAATGTACTACATATATATTTTAAAGACGAAGA  896
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGTACCACTACTAACCAAATGTACTACATATATATTTTAAAGACGAAGA  888

seq1  GGTCATAAATTCCAGATAAAGCCATGGGGCAAAGGAAGAGTTGAAAAGAG  946
      |||||||||||||||||||||||||||||||||||||||| |||||||||
seq2  GGTCATAAATTCCAGATAAAGCCATGGGGCAAAGGAAGAG-TGAAAAGAG  937

seq1  AAGGAGAGGAAACAGTATAAAAATAGTACTGATGTATGGAATTC  990
      ||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGAGAGGAAACAGTATAAAAATAGTACTGATGTATGGAATTC  981

seq1: chr17_82222618_82223583
seq2: B6Ng01-047F09.g_67_1016

seq1  GAATTCTTGACTACAGAGAATCACATTTGCCCATGTCTTTTTGCCCTATG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTTGACTACAGAGAATCACATTTGCCCATGTCTTTTTGCCCTATG  50

seq1  TTTTCATGAGGTGTTTAAAATGTCCTATTTATTCTAAGGTCCAGAAGTGT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTCATGAGGTGTTTAAAATGTCCTATTTATTCTAAGGTCCAGAAGTGT  100

seq1  TCCCTCTGTGCTTCCAACTAACAACGAGAAGTCTGCTTTCTTCAAGTGAG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCCTCTGTGCTTCCAACTAACAACGAGAAGTCTGCTTTCTTCAAGTGAG  150

seq1  GACAAAGTTTTTCTCCAGAATTGATCTTTTGGCTTCTGGATTTTGAATTT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACAAAGTTTTTCTCCAGAATTGATCTTTTGGCTTCTGGATTTTGAATTT  200

seq1  CCCAATATTCAGAAGTGTATGAAACAAATACCTACTGTGTCAGTCATGAT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCAATATTCAGAAGTGTATGAAACAAATACCTACTGTGTCAGTCATGAT  250

seq1  GGTTTTGACAATGTTTTACAGCTGTTCCAAGGAACTTGTTTGTGCTCTTG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTTTTGACAATGTTTTACAGCTGTTCCAAGGAACTTGTTTGTGCTCTTG  300

seq1  CTGATTCCCTCTATCAGACTGCAGACTGTCCTCTGTTTTTCTGCTCATGC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGATTCCCTCTATCAGACTGCAGACTGTCCTCTGTTTTTCTGCTCATGC  350

seq1  ATGCACAGAAGTTCAGCTTGATCACATTTCCCACCTTTATCAAGATGTCT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGCACAGAAGTTCAGCTTGATCACATTTCCCACCTTTATCAAGATGTCT  400

seq1  ATGAACCTTGTCTCAGTTTTACTTTTTAGGGGTTCAAGTATGCTTTGATT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGAACCTTGTCTCAGTTTTACTTTTTAGGGGTTCAAGTATGCTTTGATT  450

seq1  GTTAAGCTGCCTTCCAACCTGGTTACACACTTCATGTCACCATGATGCAG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTAAGCTGCCTTCCAACCTGGTTACACACTTCATGTCACCATGATGCAG  500

seq1  TATTAATTTTACTATTTTCTCATTAGAATCTGGCTTACCCTTTTATTTTG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTAATTTTACTATTTTCTCATTAGAATCTGGCTTACCCTTTTATTTTG  550

seq1  TTAAGAATTCTTGTATTCATACTCATGATTTTTGGTATCAAAATAGTTTT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAAGAATTCTTGTATTCATACTCATGATTTTTGGTATCAAAATAGTTTT  600

seq1  AAGTATATAGAATAAGTTATGGGGTGCTTTTTACTGGAACAGTTTATGTA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTATATAGAATAAGTTATGGGGTGCTTTTTACTGGAACAGTTTATGTA  650

seq1  AGTTAAAATGTACAGAAATACAGTGTCCTGAAGAAAATGATGGTGAAGCC  700
      |||||||||||||||||||||||||||||||||||||||||||||||| |
seq2  AGTTAAAATGTACAGAAATACAGTGTCCTGAAGAAAATGATGGTGAAG-C  699

seq1  AAATTTCTCTAATATTGTCACTGAGCCAAGTGTTAAGTTAGTTATTAAAT  750
      |||||||||||||||||||||||||||||||| ||||| ||||| |||||
seq2  AAATTTCTCTAATATTGTCACTGAGCCAAGTGATAAGTAAGTTA-TAAAT  748

seq1  TTCATAGTATTAGTTATAATATTATTCTATTTTAGAATTTATTTTTACAG  800
      |||||||||||||| || | | ||||||| ||||||||||||||||||||
seq2  TTCATAGTATTAGTGAT-AGAATATTCTA-TTTAGAATTTATTTTTACAG  796

seq1  TATTTGGTTGTATTTCTTAGTTTATTAGGCTTTAATAATTTATATATATA  850
      |||||||||||| ||| ||| |||| ||||| | |||| | |||||||||
seq2  TATTTGGTTGTA-TTCCTAGATTATCAGGCTCT-ATAA-TCATATATATA  843

seq1  TATATATATATGTAATTATTTTCACCTTTCTATCTGTTCTGTATTTATAT  900
      ||||||||||||||||   ||||| ||||||| ||| ||||| | |||| 
seq2  TATATATATATGTAAT--ATTTCA-CTTTCTAGCTG-TCTGTTTATATA-  888

seq1  TCTATGCTGATTTCATGATATATTTAAAATTCTTTTAGTTTTATAAAGTC  950
        || |||||||||||||||||| || || || ||||| ||||||| |||
seq2  --TACGCTGATTTCATGATATATATAGAACTCCTTTAG-TTTATAACGTC  935

seq1  ACTACATTATGCATGT  966
      || |||| | ||||||
seq2  ACAACATGA-GCATGT  950