BAC Information

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BAC

Clone NameB6Ng01-047J16
Chromosome17 (Build37)
Map Location 42,130,700 - 42,234,106
singlet/doubletdoublet
Overlap genenone
Upstream geneLdha-ps3, LOC627577
Downstream geneLOC627626, Opn5, Gpr115, Gpr111, EG546797, Cd2ap, Tnfrsf21
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-047J16.bB6Ng01-047J16.g
ACCDH872422DH872423
length1,1171,119
definitionDH872422|Mus musculus domesticus DNA, BAC clone: B6Ng01-047J16, 5' end.DH872423|Mus musculus domesticus DNA, BAC clone: B6Ng01-047J16, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(42,130,700 - 42,131,831)(42,232,966 - 42,234,106)
sequence
gaattcagtgcaaatgactcacaccagaaatgtggcattatccattatgt
gttaccaacattagaggaaatgagttgaaaagaaatctgacaaattgttt
attataaccaacttccagtcaataacctaaacaaatttaaaagtgttacc
ttatcattattggatacaatttttacaactaatggcaaaaataaggtatt
ttgttctttcttccacactcaaggactagagatactgttttatgaaggag
gaagacaataggaaaaaaaatagatgcccagactccagtcaaaaaaggga
atagcacaccccaaattcccttttatctcagtgtcctattttcactgaaa
gccaacaaaaagcactgatagttgaatttttttatttcagttttctttct
ggggattgtaaagaatcccaaacatataaatctttcaggatcctctctta
ttgtatcatataatagtatcttttttgataaagaatcaatgtgtgcaaga
cgctaggacctcattttcactagagttcttggctattgtccattttccat
actctcataccataaggtactataactttttgaagcagattttccttaga
gatcaataaaataataaactgcaaaagtacaaccattaacgtattggctt
taccatgaaaataccacattttactggctgcccttcaagtcccttggctc
cactaagacttatggaagcgtctagggttgctactaatggccaaacaatc
agcaaagctcttgtgttgctcttgcccttgctgcactctcttcctcactg
tgagctataagttcttttgagttattgtgttgtttgaagtcgctctatat
attgcttgtaagaatccaccccctctttttctgtaaaggagaaagctcta
tgagggggtgggtgacattatagagaagaaaacattagtcatgtgtcaca
agtgctgctattaaatgctacagcacatggtatttccagttagcttcagt
gattgcagagtctattcatggggctactttctcaaggtgtaagcctgtta
atgctgttgtaccctcagtagttaggaagtagtatatttttgtaagtaca
tgttctaattgtttctt
gaattccattgtcagttttcagttgattgaaccacactttattagatgtt
cctttttatataaaacacccagagccaggcagtggtggtgcaagccttta
atcccagcacttgggaggcagaggcaggtggatttctgagttctaggcta
gcctggtctacaaagtgagttccaggacagccaggactacacagagaaac
cctgtctcaaaaacaaaacaaaacaaaacaaaacaaaacaaaacaaaaca
aaacaaaaccaaacaaccaaacaaccaaacaaaacacccagaaatagagc
cagtgttgagatctcaacttctatttaattggcggtaatgatcctctttt
tcttagcacattattagccttacctatagataattatgattattgactga
gaaatccttacttaaaagtactggagcagcacctccaaataaaataatgt
ataataaattatatcttttatttcactggtaattcaatacattttcttta
attaatgtgaaaatgacttaattttgttaactctttctcaataatttggg
gtgaatttatcaatataatttttctagcttagtaaattaacaatcgaact
ctttcatctttttctatctaattcataaaataaatatatggtagtttatt
ttaaataccatcatataaaatcaaattaaatttgagaagattataaagtc
tatactgttatagaagtaaggtagtttattacaaaaatatttgttaaaag
taggcaataccataaaccaaaagtagatatgctaattagtcaactgaaaa
ttagatttagtaatcttttgaacaattttcatatatgctgtataaatata
tttaaatatataatctataaattatggatatatatacatatattatatat
catttataaattataaatatatccagtatcttatatatcatatataattt
catagtatgtacaaaattatatattaaataatatatattatatataacat
atatgatatgcatatatactttatatatatgtacaaattatttatttttg
atttatgtaattatttgaagatgaaccaccgcaatattactcagaagatc
tacttgagctggggaattt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr17_42130700_42131831
seq2: B6Ng01-047J16.b_45_1161

seq1  GAATTCAGTGCAAATGACTCACACCAGAAATGTGGCATTATCCATTATGT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAGTGCAAATGACTCACACCAGAAATGTGGCATTATCCATTATGT  50

seq1  GTTACCAACATTAGAGGAAATGAGTTGAAAAGAAATCTGACAAATTGTTT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTACCAACATTAGAGGAAATGAGTTGAAAAGAAATCTGACAAATTGTTT  100

seq1  ATTATAACCAACTTCCAGTCAATAACCTAAACAAATTTAAAAGTGTTACC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTATAACCAACTTCCAGTCAATAACCTAAACAAATTTAAAAGTGTTACC  150

seq1  TTATCATTATTGGATACAATTTTTACAACTAATGGCAAAAATAAGGTATT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATCATTATTGGATACAATTTTTACAACTAATGGCAAAAATAAGGTATT  200

seq1  TTGTTCTTTCTTCCACACTCAAGGACTAGAGATACTGTTTTATGAAGGAG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTTCTTTCTTCCACACTCAAGGACTAGAGATACTGTTTTATGAAGGAG  250

seq1  GAAGACAATAGGAAAAAAAATAGATGCCCAGACTCCAGTCAAAAAAGGGA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGACAATAGGAAAAAAAATAGATGCCCAGACTCCAGTCAAAAAAGGGA  300

seq1  ATAGCACACCCCAAATTCCCTTTTATCTCAGTGTCCTATTTTCACTGAAA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAGCACACCCCAAATTCCCTTTTATCTCAGTGTCCTATTTTCACTGAAA  350

seq1  GCCAACAAAAAGCACTGATAGTTGAATTTTTTTATTTCAGTTTTCTTTCT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCAACAAAAAGCACTGATAGTTGAATTTTTTTATTTCAGTTTTCTTTCT  400

seq1  GGGGATTGTAAAGAATCCCAAACATATAAATCTTTCAGGATCCTCTCTTA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGGATTGTAAAGAATCCCAAACATATAAATCTTTCAGGATCCTCTCTTA  450

seq1  TTGTATCATATAATAGTATCTTTTTTGATAAAGAATCAATGTGTGCAAGA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTATCATATAATAGTATCTTTTTTGATAAAGAATCAATGTGTGCAAGA  500

seq1  CGCTAGGACCTCATTTTCACTAGAGTTCTTGGCTATTGTCCATTTTCCAT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGCTAGGACCTCATTTTCACTAGAGTTCTTGGCTATTGTCCATTTTCCAT  550

seq1  ACTCTCATACCATAAGGTACTATAACTTTTTGAAGCAGATTTTCCTTAGA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTCTCATACCATAAGGTACTATAACTTTTTGAAGCAGATTTTCCTTAGA  600

seq1  GATCAATAAAATAATAAACTGCAAAAGTACAACCATTAACGTATTGGCTT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATCAATAAAATAATAAACTGCAAAAGTACAACCATTAACGTATTGGCTT  650

seq1  TACCATGAAAATACCACATTTTACTGGCTGCCCTTCAAGTCCCTTGGCTC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACCATGAAAATACCACATTTTACTGGCTGCCCTTCAAGTCCCTTGGCTC  700

seq1  CACTAAGACTTATGGAAGCGTCTAGGGTTGCTACTAATGGCCAAACAATC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACTAAGACTTATGGAAGCGTCTAGGGTTGCTACTAATGGCCAAACAATC  750

seq1  AGCAAAGCTCTTGTGTTGCTCTTGCCCTTGCTGCACTCTCTTCCTCACTG  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCAAAGCTCTTGTGTTGCTCTTGCCCTTGCTGCACTCTCTTCCTCACTG  800

seq1  TGAGCTATAAGTTCTTTTGAGTTATTGTGTTGTTTGAAGTCGCTCTATAT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGCTATAAGTTCTTTTGAGTTATTGTGTTGTTTGAAGTCGCTCTATAT  850

seq1  ATTGCTTGTAAGAATCCACCCCCTCTTTTTCTGTAAAGGAGAAAGCTCTA  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTGCTTGTAAGAATCCACCCCCTCTTTTTCTGTAAAGGAGAAAGCTCTA  900

seq1  TGAGGGGGTGGGTGACAATTATAGAGAAGGAAAACAATTAGTCATGTGTC  950
      |||||||||||||||| ||||||||||| |||||| ||||||||||||||
seq2  TGAGGGGGTGGGTGAC-ATTATAGAGAA-GAAAAC-ATTAGTCATGTGTC  947

seq1  ACAAGGTGCTGCTATTAAATGCTACAGCACAATGGTATTTCCAGTTTAGC  1000
      |||| ||||||||||||||||||||||||| ||||||||||||| |||||
seq2  ACAA-GTGCTGCTATTAAATGCTACAGCAC-ATGGTATTTCCAG-TTAGC  994

seq1  TTCAAGTGATTGCAGAAGTCTATTCCATGGGGCTACTTTCTCAGAGTGTA  1050
      ||| ||||||||||| |||||||| ||||||||||||||||||  |||| 
seq2  TTC-AGTGATTGCAG-AGTCTATT-CATGGGGCTACTTTCTCAAGGTGT-  1040

seq1  AAGCCTGGTTTAATGCTGTTGTACACTCAGTAAGTTAGGAAGTAGTATAT  1100
      |||||||  ||||||||||||||| |||||| ||||||||||||||||||
seq2  AAGCCTG--TTAATGCTGTTGTACCCTCAGT-AGTTAGGAAGTAGTATAT  1087

seq1  TTTTGTAAAGTACATGTTCTAGTTTGTTTCTT  1132
      |||||| ||||||||||||||  |||||||||
seq2  TTTTGT-AAGTACATGTTCTA-ATTGTTTCTT  1117

seq1: chr17_42232966_42234106
seq2: B6Ng01-047J16.g_68_1186 (reverse)

seq1  AAATATCCCCAGCTCAAGTTAGTATCTTCCTTGAAGTTAAATATTGCTGT  50
      |||| ||||||||||||| ||| ||||||  || |||  |||||||| ||
seq2  AAAT-TCCCCAGCTCAAG-TAG-ATCTTC--TG-AGT--AATATTGCGGT  42

seq1  TGTTCATCTTTAAATATATACATATATCATATATATATAATTTTGTACAT  100
       ||||||||| |||||  |||||| |||| | ||| |||| |||||||||
seq2  GGTTCATCTTCAAATAATTACATAAATCAAAAATAAATAA-TTTGTACAT  91

seq1  ATTATATAAAGTTATATAATGCATATCATATATGTTATATATAATTATAT  150
      | ||||||||| ||||| |||||||||||||||||||||||||| |||||
seq2  A-TATATAAAG-TATAT-ATGCATATCATATATGTTATATATAA-TATAT  137

seq1  ATTATTTTAATATATAATTTTTGTACATACTATGAAATTTATATATGATA  200
      |||| |||||||||||| ||||||||||||||||||| ||||||||||||
seq2  ATTA-TTTAATATATAA-TTTTGTACATACTATGAAA-TTATATATGATA  184

seq1  TATAAGATACTTGGATATATTTTATAATTTATAAATGATATATAATATTA  250
      |||||||||| |||||||| ||||||||||||||||||||||||||| ||
seq2  TATAAGATAC-TGGATATA-TTTATAATTTATAAATGATATATAATA-TA  231

seq1  TGTTATATATTATCCATAATTTATAGATTATATATTTAAATATATTTTAT  300
      || |||||| |||||||||||||||||||||||||||||||||| |||||
seq2  TG-TATATA-TATCCATAATTTATAGATTATATATTTAAATATA-TTTAT  278

seq1  ACAGCATATATGAAAATTGTTCAAAAGATTACTAAATCTAATTTTCAGTT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGCATATATGAAAATTGTTCAAAAGATTACTAAATCTAATTTTCAGTT  328

seq1  GACTAATTAGCATATCTACTTTTGGTTTATGGTATTGCCTACTTTTAACA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACTAATTAGCATATCTACTTTTGGTTTATGGTATTGCCTACTTTTAACA  378

seq1  AATATTTTTGTAATAAACTACCTTACTTCTATAACAGTATAGACTTTATA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATATTTTTGTAATAAACTACCTTACTTCTATAACAGTATAGACTTTATA  428

seq1  ATCTTCTCAAATTTAATTTGATTTTATATGATGGTATTTAAAATAAACTA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTTCTCAAATTTAATTTGATTTTATATGATGGTATTTAAAATAAACTA  478

seq1  CCATATATTTATTTTATGAATTAGATAGAAAAAGATGAAAGAGTTCGATT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCATATATTTATTTTATGAATTAGATAGAAAAAGATGAAAGAGTTCGATT  528

seq1  GTTAATTTACTAAGCTAGAAAAATTATATTGATAAATTCACCCCAAATTA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTAATTTACTAAGCTAGAAAAATTATATTGATAAATTCACCCCAAATTA  578

seq1  TTGAGAAAGAGTTAACAAAATTAAGTCATTTTCACATTAATTAAAGAAAA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGAGAAAGAGTTAACAAAATTAAGTCATTTTCACATTAATTAAAGAAAA  628

seq1  TGTATTGAATTACCAGTGAAATAAAAGATATAATTTATTATACATTATTT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTATTGAATTACCAGTGAAATAAAAGATATAATTTATTATACATTATTT  678

seq1  TATTTGGAGGTGCTGCTCCAGTACTTTTAAGTAAGGATTTCTCAGTCAAT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTTGGAGGTGCTGCTCCAGTACTTTTAAGTAAGGATTTCTCAGTCAAT  728

seq1  AATCATAATTATCTATAGGTAAGGCTAATAATGTGCTAAGAAAAAGAGGA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATCATAATTATCTATAGGTAAGGCTAATAATGTGCTAAGAAAAAGAGGA  778

seq1  TCATTACCGCCAATTAAATAGAAGTTGAGATCTCAACACTGGCTCTATTT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATTACCGCCAATTAAATAGAAGTTGAGATCTCAACACTGGCTCTATTT  828

seq1  CTGGGTGTTTTGTTTGGTTGTTTGGTTGTTTGGTTTTGTTTTGTTTTGTT  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGGTGTTTTGTTTGGTTGTTTGGTTGTTTGGTTTTGTTTTGTTTTGTT  878

seq1  TTGTTTTGTTTTGTTTTGTTTTGTTTTGTTTTTGAGACAGGGTTTCTCTG  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTTTTGTTTTGTTTTGTTTTGTTTTGTTTTTGAGACAGGGTTTCTCTG  928

seq1  TGTAGTCCTGGCTGTCCTGGAACTCACTTTGTAGACCAGGCTAGCCTAGA  1000
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTAGTCCTGGCTGTCCTGGAACTCACTTTGTAGACCAGGCTAGCCTAGA  978

seq1  ACTCAGAAATCCACCTGCCTCTGCCTCCCAAGTGCTGGGATTAAAGGCTT  1050
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTCAGAAATCCACCTGCCTCTGCCTCCCAAGTGCTGGGATTAAAGGCTT  1028

seq1  GCACCACCACTGCCTGGCTCTGGGTGTTTTATATAAAAAGGAACATCTAA  1100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCACCACCACTGCCTGGCTCTGGGTGTTTTATATAAAAAGGAACATCTAA  1078

seq1  TAAAGTGTGGTTCAATCAACTGAAAACTGACAATGGAATTC  1141
      |||||||||||||||||||||||||||||||||||||||||
seq2  TAAAGTGTGGTTCAATCAACTGAAAACTGACAATGGAATTC  1119