BAC Information

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BAC

Clone NameB6Ng01-047L01
Chromosome17 (Build37)
Map Location 26,472,069 - 26,582,668
singlet/doubletdoublet
Overlap geneEG240055, C230078M08Rik
Upstream geneTpsab1, Mcpt6, Tpsg1, Cacna1h, Tekt4, Sstr5, LOC100042580, Sox8, Tmem112, LOC545396, Gng13, Chtf18, Rpusd1, BC052484, Msln, Narfl, Haghl, Ccdc78, BC008155, Metrn, Fbxl16, Wdr24, 2610003J06Rik, Stub1, Rhbdl1, Rhot2, Wdr90, 9530058B02Rik, 0610011F06Rik, Wfikkn1, Rab40c, LOC100043160, Pigq, F430201B04Rik, D630044L22Rik, Solh, 1700022N22Rik, Rab11fip3, Decr2, Nme4, EG666609, Tmem8, Mrpl28, Axin1, Pdia2, Arhgdig, Rgs11, Itfg3, LOC100042643, Luc7l, EG383229
Downstream geneDusp1, EG666668, Ergic1, Atp6v0e, A930001N09Rik, Bnip1, Nkx2-5, Kifc1, Phf1, Cuta, Syngap1, Zbtb9, Bak1, Ggnbp1, Itpr3, 2900010M23Rik, Ihpk3, Lemd2, LOC100042713, ENSMUSG00000073430, Grm4
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-047L01.bB6Ng01-047L01.g
ACCDH872485DH872486
length726848
definitionDH872485|Mus musculus domesticus DNA, BAC clone: B6Ng01-047L01, 5' end.DH872486|Mus musculus domesticus DNA, BAC clone: B6Ng01-047L01, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(26,581,943 - 26,582,668)(26,472,069 - 26,472,911)
sequence
gaattcagggctcttgtgcatccccgttccagtgcctggaagtggcaggg
agttttctgcccagagactccctgtgggtggtcattaactggtgggatct
tggctgtttggcaagggctcactcaccataaagaacacccctaaggtagg
tgcagaaagtattgtgggcatctatttagatggatccaaggcaatagaat
ggtcaagaaagcccacatgctccaccctgtcttgccctgctgaaggtacc
actcaggcatcagggctgggtgcttgctctctgttgccccttatagcagc
tggcatcctgagggcactcagcaaatgtttgttgagtgactttgtgtcca
tatatatataatggatgctatttcaccaaccccctgaccactcctaacct
ggctcctgatctgatctgcagtcttttactgagcacctactatgtgctag
cacaagccccaactccagagtgatcaaatcagtttatgatctcttgcctg
agagctgcccacaggccttgccttttgtcccagtcttcaacctcatgttc
tgaccatgagccatgctggtaagtggatgctgaacaagtgaaaatgtgtg
tcgcagcctgcacaggacagctgcccaagagggccaaccagtaagaggag
gagcctgcttagcctgggaaacaactattttccagaaattcccagggggc
aggatatggctgctatgtatagggga
gaattcattctttaggcacggtgagggctttataccatgacgtcatcaac
agcgatcccaaaaccccaactctgtaattattctccccctagaaggaccc
actcatcttctctattcagtgtttttcaagcaaaacctccagatgacttt
gagcgggctctatgtctaaatgggtcacaggtctgcccacataagtgggg
cagggaaaggaaggaaaagaactgcaaagagtaagggaaagaagcctgat
caacctccacagttcaagactttatggaccacactttgaaagggcaggag
gtcccatgagacagggcaatgaaggcagggttaggaaggaacaaacaacg
ggttccttacctgttctggcctttacaatgtgcccccaacatgccagtcc
tgggggcttttctgggtcatcctttgggctgtggtggccacattccctgt
agcatcacaattactccacaccccagctggctggcacatggccagcatgg
agttgtggagttgcagcattaaggctgctttcctcaagtgcctaggacaa
gggatccccaagaaaactggaggtacaggcctttagtctgtgtctgtggt
tgggacagctgggtgtgggagtttagcagaaccagggctttccccacagt
ggcttcggttcaggcttgtcacccccttcccagtgtactggctgctcagc
tcagaccatttgtctactaacatgcataccacagcaagggcggagtttgc
ttttgaatgctttgtttggtcctttgattcctgcaaagtaagggtaagta
taagctgctgtattgtgtatcaaaaggtcactgggttggctgattgca
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr17_26581943_26582668
seq2: B6Ng01-047L01.b_46_770 (reverse)

seq1  CCCCTATACATAGCAGCCATATCCCTGCCCCCTGGGAATTTCTGGAAAAT  50
      |||||||||||||||||||||| |||||||||||||||||||||||||||
seq2  CCCCTATACATAGCAGCCATAT-CCTGCCCCCTGGGAATTTCTGGAAAAT  49

seq1  AGTTGTTTCCCAGGCTAAGCAGGCTCCTCCTCTTACTGGTTGGCCCTCTT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTGTTTCCCAGGCTAAGCAGGCTCCTCCTCTTACTGGTTGGCCCTCTT  99

seq1  GGGCAGCTGTCCTGTGCAGGCTGCGACACACATTTTCACTTGTTCAGCAT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGCAGCTGTCCTGTGCAGGCTGCGACACACATTTTCACTTGTTCAGCAT  149

seq1  CCACTTACCAGCATGGCTCATGGTCAGAACATGAGGTTGAAGACTGGGAC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCACTTACCAGCATGGCTCATGGTCAGAACATGAGGTTGAAGACTGGGAC  199

seq1  AAAAGGCAAGGCCTGTGGGCAGCTCTCAGGCAAGAGATCATAAACTGATT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAGGCAAGGCCTGTGGGCAGCTCTCAGGCAAGAGATCATAAACTGATT  249

seq1  TGATCACTCTGGAGTTGGGGCTTGTGCTAGCACATAGTAGGTGCTCAGTA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGATCACTCTGGAGTTGGGGCTTGTGCTAGCACATAGTAGGTGCTCAGTA  299

seq1  AAAGACTGCAGATCAGATCAGGAGCCAGGTTAGGAGTGGTCAGGGGGTTG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGACTGCAGATCAGATCAGGAGCCAGGTTAGGAGTGGTCAGGGGGTTG  349

seq1  GTGAAATAGCATCCATTATATATATATGGACACAAAGTCACTCAACAAAC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGAAATAGCATCCATTATATATATATGGACACAAAGTCACTCAACAAAC  399

seq1  ATTTGCTGAGTGCCCTCAGGATGCCAGCTGCTATAAGGGGCAACAGAGAG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTGCTGAGTGCCCTCAGGATGCCAGCTGCTATAAGGGGCAACAGAGAG  449

seq1  CAAGCACCCAGCCCTGATGCCTGAGTGGTACCTTCAGCAGGGCAAGACAG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAGCACCCAGCCCTGATGCCTGAGTGGTACCTTCAGCAGGGCAAGACAG  499

seq1  GGTGGAGCATGTGGGCTTTCTTGACCATTCTATTGCCTTGGATCCATCTA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTGGAGCATGTGGGCTTTCTTGACCATTCTATTGCCTTGGATCCATCTA  549

seq1  AATAGATGCCCACAATACTTTCTGCACCTACCTTAGGGGTGTTCTTTATG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATAGATGCCCACAATACTTTCTGCACCTACCTTAGGGGTGTTCTTTATG  599

seq1  GTGAGTGAGCCCTTGCCAAACAGCCAAGATCCCACCAGTTAATGACCACC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGAGTGAGCCCTTGCCAAACAGCCAAGATCCCACCAGTTAATGACCACC  649

seq1  CACAGGGAGTCTCTGGGCAGAAAACTCCCTGCCACTTCCAGGCACTGGAA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACAGGGAGTCTCTGGGCAGAAAACTCCCTGCCACTTCCAGGCACTGGAA  699

seq1  CGGGGATGCACAAGAGCCCTGAATTC  726
      ||||||||||||||||||||||||||
seq2  CGGGGATGCACAAGAGCCCTGAATTC  725

seq1: chr17_26472069_26472911
seq2: B6Ng01-047L01.g_67_914

seq1  GAATTCATTCTTTAGGCACGGTGAGGGCTTTATACCATGACGTCATCAAC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCATTCTTTAGGCACGGTGAGGGCTTTATACCATGACGTCATCAAC  50

seq1  AGCGATCCCAAAACCCCAACTCTGTAATTATTCTCCCCCTAGAAGGACCC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCGATCCCAAAACCCCAACTCTGTAATTATTCTCCCCCTAGAAGGACCC  100

seq1  ACTCATCTTCTCTATTCAGTGTTTTTCAAGCAAAACCTCCAGATGACTTT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTCATCTTCTCTATTCAGTGTTTTTCAAGCAAAACCTCCAGATGACTTT  150

seq1  GAGCGGGCTCTATGTCTAAATGGGTCACAGGTCTGCCCACATAAGTGGGG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGCGGGCTCTATGTCTAAATGGGTCACAGGTCTGCCCACATAAGTGGGG  200

seq1  CAGGGAAAGGAAGGAAAAGAACTGCAAAGAGTAAGGGAAAGAAGCCTGAT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGGAAAGGAAGGAAAAGAACTGCAAAGAGTAAGGGAAAGAAGCCTGAT  250

seq1  CAACCTCCACAGTTCAAGACTTTATGGACCACACTTTGAAAGGGCAGGAG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAACCTCCACAGTTCAAGACTTTATGGACCACACTTTGAAAGGGCAGGAG  300

seq1  GTCCCATGAGACAGGGCAATGAAGGCAGGGTTAGGAAGGAACAAACAACG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCCCATGAGACAGGGCAATGAAGGCAGGGTTAGGAAGGAACAAACAACG  350

seq1  GGTTCCTTACCTGTTCTGGCCTTTACAATGTGCCCCCAACATGCCAGTCC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTTCCTTACCTGTTCTGGCCTTTACAATGTGCCCCCAACATGCCAGTCC  400

seq1  TGGGGGCTTTTCTGGGTCATCCTTTGGGCTGTGGTGGCCACATTCCCTGT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGGGGCTTTTCTGGGTCATCCTTTGGGCTGTGGTGGCCACATTCCCTGT  450

seq1  AGCATCACAATTACTCCACACCCCAGCTGGCTGGCACATGGCCAGCATGG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCATCACAATTACTCCACACCCCAGCTGGCTGGCACATGGCCAGCATGG  500

seq1  AGTTGTGGAGTTGCAGCATTAAGGCTGCTTTCCTCAAGTGCCTAGGACAA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTGTGGAGTTGCAGCATTAAGGCTGCTTTCCTCAAGTGCCTAGGACAA  550

seq1  GGGATCCCCAAGAAAACTGGAGGTACAGGCCTTTAGTCTGTGTCTGTGGT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGATCCCCAAGAAAACTGGAGGTACAGGCCTTTAGTCTGTGTCTGTGGT  600

seq1  TGGGACAGCTGGGTGTGGGAGTTTAGCAGAACCAGGGC-TTCCCCACAGT  649
      |||||||||||||||||||||||||||||||||||||| |||||||||||
seq2  TGGGACAGCTGGGTGTGGGAGTTTAGCAGAACCAGGGCTTTCCCCACAGT  650

seq1  GGCTTCGGTTCAGGCTTGTCACCCCC-TCCCAGTGTACTGGCTGCTCAGC  698
      |||||||||||||||||||||||||| |||||||||||||||||||||||
seq2  GGCTTCGGTTCAGGCTTGTCACCCCCTTCCCAGTGTACTGGCTGCTCAGC  700

seq1  TCAGACCATTTGTCTACTAACATGCATACCACAGCAAGGGCGGAG-TTGC  747
      ||||||||||||||||||||||||||||||||||||||||||||| ||||
seq2  TCAGACCATTTGTCTACTAACATGCATACCACAGCAAGGGCGGAGTTTGC  750

seq1  -TTTGGATGCGTTGTTTGGTCCTTTGATTCTTGCAGAGTAAGGGTAAGTA  796
       |||| |||| ||||||||||||||||||| |||| ||||||||||||||
seq2  TTTTGAATGCTTTGTTTGGTCCTTTGATTCCTGCAAAGTAAGGGTAAGTA  800

seq1  T-AGCTGCTGTATAGTGTATCAAAAGGGCACTGGGTTGGCTGATTGCA  843
      | ||||||||||| ||||||||||||| ||||||||||||||||||||
seq2  TAAGCTGCTGTATTGTGTATCAAAAGGTCACTGGGTTGGCTGATTGCA  848