BAC Information

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BAC

Clone NameB6Ng01-048G21
Chromosome17 (Build37)
Map Location 53,560,894 - 53,701,251
singlet/doubletdoublet
Overlap geneEfhb, LOC668513, Rab5a, 4921523A10Rik
Upstream geneEG328839, Kcnh8, LOC668506, EG629036, LOC668512
Downstream genePcaf, EG628822, Sgol1, EG629065, 4932415M13Rik, Ck-ps1, EG637939, Sult1c2, LOC100043826, LOC100043471, EG668523, LOC629121, Gm324, Sult1c1, LOC100043829, EG435531, Slc5a7, LOC668529, 1700025K24Rik, Trp53-ps, LOC240117
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-048G21.bB6Ng01-048G21.g
ACCDH872991DH872992
length943937
definitionDH872991|Mus musculus domesticus DNA, BAC clone: B6Ng01-048G21, 5' end.DH872992|Mus musculus domesticus DNA, BAC clone: B6Ng01-048G21, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(53,560,894 - 53,561,840)(53,700,663 - 53,701,251)
sequence
gaattcactgaaggtacaatgtattcttaggtataagaatgtccactgtt
ccccagagatccagagagctacacttgctcttgctctcagaacactgaga
tttcatcagttctgcttatgtgtagtcactgaccatgcttcaaacctctc
agtcatggctgtgtttcaaggaaacatcactttaaaagacatgtaatgag
ctgcgtatgacccatagtttgctgaaccaccctccccccacatctgcacc
agtctgctgagattcctctgtgcatcacaatccccttgctctgtgagact
actggccttgtcatagtgcctgaaagccacctgcaaagtgtcaaagttct
ggtgattaaatttcttcaagtggtggcgagcagctgcaaccacggctctc
tggtggtccttcccacgaagatattcatctgggcttctataatggatgag
atcgccagctcctattgaagaaaaagggagtcttgtatgtgaatttgaaa
tatggccatggagttttaagagagagacagaggcagagagacctagcaac
ctctaggaatgaacaaacaaaacaattatatctgatgctccccactacaa
ggtctcatgtagcccaggctggcctcattgaactcatggtaatcttttca
atctcctaaatgctgggattaccagtgtggacaacatgctcacccagtga
tactattatgcagaatgtttctctgtagaaaacggcgaataaagcaattg
actcttttaaaaagttctgtagctacttgtattctaattctgtgtccccc
aaattagtttgcacgagagggtatgcacaatgtgtctgggaacctacctc
cacttaattctgataggtaaataaagatgtcacagccagtaactggggag
agagagaggaggggtttttaagtttttggacttggaccttgag
gaattccaggacagcttgttctgcatagcaagactgcttaaaaactaaaa
caaatttattaaattaacttttcagatcatttatttatttttattttatg
tacattggtattctacctgcttgcatgtctgtgtgagggtgccagatccc
ctggaactggagtagccccattaaatacatttttaaaagaagaaagactt
tctgagcatggcgatacatgactgtaatcctgatgactagaagggtcctg
atgtcctggcttggagaatataagaggaaaagaaaaagaagaccatgcca
cagagatggatatgtaattcagacacacagaggacgaaggaccatgtgac
aggaagagtgaatgtagaggtttgctgtgcattgtaatgctaaattctgt
acccaaagggaaagttgcctacatgacaattcttatatttacaagctttt
gtcctgcaaaccttgttccttgatgtaaaacaattggttaaataaaactg
cccacaaccagttactagagggttttgaattacctggttaggggtgaata
ggagagtggggagacctggtggagaagaagaaagaagagaggaggctggc
aatgaggggagatgggcgatgagcacagcacgtggccaggagaaacaagg
atctggggatatacagatgggagggtagccaggctcaacagaggtagtca
ggtccaacagttagaagaagcagattaggggttaccctctagaattgtca
aagccaaataaaataaccatagtctgagtttcgtttatttttaagctagt
caaggataagctttaaattggttgtactacatagactttataggaatagt
taaggaaaccaatatttccgaggcgaagcctaaagtgttagggagcacat
gctacttgagatccgacgctggagtatctgtggatta
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr17_53560894_53561840
seq2: B6Ng01-048G21.b_45_987

seq1  GAATTCACTGAAGGTACAATGTATTCTTAGGTATAAGAATGTCCACTGTT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCACTGAAGGTACAATGTATTCTTAGGTATAAGAATGTCCACTGTT  50

seq1  CCCCAGAGATCCAGAGAGCTACACTTGCTCTTGCTCTCAGAACACTGAGA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCCAGAGATCCAGAGAGCTACACTTGCTCTTGCTCTCAGAACACTGAGA  100

seq1  TTTCATCAGTTCTGCTTATGTGTAGTCACTGACCATGCTTCAAACCTCTC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCATCAGTTCTGCTTATGTGTAGTCACTGACCATGCTTCAAACCTCTC  150

seq1  AGTCATGGCTGTGTTTCAAGGAAACATCACTTTAAAAGACATGTAATGAG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTCATGGCTGTGTTTCAAGGAAACATCACTTTAAAAGACATGTAATGAG  200

seq1  CTGCGTATGACCCATAGTTTGCTGAACCACCCTCCCCCCACATCTGCACC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGCGTATGACCCATAGTTTGCTGAACCACCCTCCCCCCACATCTGCACC  250

seq1  AGTCTGCTGAGATTCCTCTGTGCATCACAATCCCCTTGCTCTGTGAGACT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTCTGCTGAGATTCCTCTGTGCATCACAATCCCCTTGCTCTGTGAGACT  300

seq1  ACTGGCCTTGTCATAGTGCCTGAAAGCCACCTGCAAAGTGTCAAAGTTCT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTGGCCTTGTCATAGTGCCTGAAAGCCACCTGCAAAGTGTCAAAGTTCT  350

seq1  GGTGATTAAATTTCTTCAAGTGGTGGCGAGCAGCTGCAACCACGGCTCTC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTGATTAAATTTCTTCAAGTGGTGGCGAGCAGCTGCAACCACGGCTCTC  400

seq1  TGGTGGTCCTTCCCACGAAGATATTCATCTGGGCTTCTATAATGGATGAG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGTGGTCCTTCCCACGAAGATATTCATCTGGGCTTCTATAATGGATGAG  450

seq1  ATCGCCAGCTCCTATTGAAGAAAAAGGGAGTCTTGTATGTGAATTTGAAA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCGCCAGCTCCTATTGAAGAAAAAGGGAGTCTTGTATGTGAATTTGAAA  500

seq1  TATGGCCATGGAGTTTTAAGAGAGAGACAGAGGCAGAGAGACCTAGCAAC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATGGCCATGGAGTTTTAAGAGAGAGACAGAGGCAGAGAGACCTAGCAAC  550

seq1  CTCTAGGAATGAACAAACAAAACAATTATATCTGATGCTCCCCACTACAA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTAGGAATGAACAAACAAAACAATTATATCTGATGCTCCCCACTACAA  600

seq1  GGTCTCATGTAGCCCAGGCTGGCCTCATTGAACTCATGGTAATCTTTTCA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTCTCATGTAGCCCAGGCTGGCCTCATTGAACTCATGGTAATCTTTTCA  650

seq1  ATCTCCTAAATGCTGGGATTACCAGTGTGGACAACATGCTCACCCAGTGA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTCCTAAATGCTGGGATTACCAGTGTGGACAACATGCTCACCCAGTGA  700

seq1  TACTATTATGCAGAATGTTTCTCTGTAGAAAACGGCGAATAAAGCAATTG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACTATTATGCAGAATGTTTCTCTGTAGAAAACGGCGAATAAAGCAATTG  750

seq1  ACTCTTTTAAAAAGTTCTGTAGCTACTTGTATTCTAATTCTGTGTCCCCC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTCTTTTAAAAAGTTCTGTAGCTACTTGTATTCTAATTCTGTGTCCCCC  800

seq1  AAATTAGTTTGCACGAGAGGGTATGCACAATGTGTCTGGGAACCTACCTC  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATTAGTTTGCACGAGAGGGTATGCACAATGTGTCTGGGAACCTACCTC  850

seq1  CACTTAATTCTGATTAGGTAAATAAAGATGTCACAGCCAGTAACTGGGGA  900
      ||||||||||||| ||||||||||||||||||||||||||||||||||||
seq2  CACTTAATTCTGA-TAGGTAAATAAAGATGTCACAGCCAGTAACTGGGGA  899

seq1  GAAGAGAGAGGAGGGGTTTTTAGGTTTTCTGGACTTGGGACCTTGAG  947
      | |||||||||||||||||||| ||||| ||||||| ||||||||||
seq2  G-AGAGAGAGGAGGGGTTTTTAAGTTTT-TGGACTT-GGACCTTGAG  943

seq1: chr17_53700663_53701251
seq2: B6Ng01-048G21.g_415_1003 (reverse)

seq1  TCATCCAACAGATACCTCCAGCGTCTGTATCTCATGTAAGCATGTGCTCC  50
      | |||| ||||||| |||||||||| | |||||| || ||||||||||||
seq2  TAATCC-ACAGATA-CTCCAGCGTC-GGATCTCAAGT-AGCATGTGCTCC  46

seq1  CTAACACTTTAGGCTTCGCCTCTGAAATATTGGGTTTCCTTAACTCTTCC  100
      |||||||||||||||||||||| |||||||| ||||||||||||| ||||
seq2  CTAACACTTTAGGCTTCGCCTCGGAAATATT-GGTTTCCTTAACTATTCC  95

seq1  TCTAAAGTCTCTGTAGTACAACCAATTT-AAGCTTATCCCTGACTAGCTT  149
      | |||||||| ||||||||||||||||| |||||||||| ||||||||||
seq2  TATAAAGTCTATGTAGTACAACCAATTTAAAGCTTATCCTTGACTAGCTT  145

seq1  AAAAATAAACGAAACTCAGACTATGGTTATTTTATTTGGCTTTGACAATT  199
      |||||||||||||||||||||||||||||||||||||||||||||||| |
seq2  AAAAATAAACGAAACTCAGACTATGGTTATTTTATTTGGCTTTGACAA-T  194

seq1  TCTAGAGGGTAACCCCTAATCTGCTT-TTCTAACTGTTGG-CCTGGCTAC  247
      |||||||||||||||||||||||||| ||||||||||||| |||| ||||
seq2  TCTAGAGGGTAACCCCTAATCTGCTTCTTCTAACTGTTGGACCTGACTAC  244

seq1  CTCTGTTG-GCCTGGCTA-CCTCCCATCTGTATAT-CCCAGATCCTTGTT  294
      |||||||| ||||||||| |||||||||||||||| ||||||||||||||
seq2  CTCTGTTGAGCCTGGCTACCCTCCCATCTGTATATCCCCAGATCCTTGTT  294

seq1  TCTCCTGGCCACGTGCTGTGCTCATCGCCCATCTCCCCTCATTGCCAGCC  344
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCCTGGCCACGTGCTGTGCTCATCGCCCATCTCCCCTCATTGCCAGCC  344

seq1  TCCTCTCTTCTTTCTTCTTCTCCACCAGGTCTCCCCACTCTCCTATTCAC  394
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTCTCTTCTTTCTTCTTCTCCACCAGGTCTCCCCACTCTCCTATTCAC  394

seq1  CCCTAACCAGGTAATTCAAAACCCTCTAGTAACTGGTTGTGGGCAGTTTT  444
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCTAACCAGGTAATTCAAAACCCTCTAGTAACTGGTTGTGGGCAGTTTT  444

seq1  ATTTAACCAATTGTTTTACATCAAGGAACAAGGTTTGCAGGACAAAAGCT  494
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTAACCAATTGTTTTACATCAAGGAACAAGGTTTGCAGGACAAAAGCT  494

seq1  TGTAAATATAAGAATTGTCATGTAGGCAACTTTCCCTTTGGGTACAGAAT  544
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTAAATATAAGAATTGTCATGTAGGCAACTTTCCCTTTGGGTACAGAAT  544

seq1  TTAGCATTACAATGCACAGCAAACCTCTACATTCACTCTTCCTGT  589
      |||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAGCATTACAATGCACAGCAAACCTCTACATTCACTCTTCCTGT  589