BAC Information

Click to search

BAC

Clone NameB6Ng01-048N23
Chromosome17 (Build37)
Map Location 90,379,488 - 90,434,928
singlet/doubletdoublet
Overlap geneNrxn1
Upstream geneFshr, LOC100043904, LOC100043906
Downstream genenone
LinkOpen Mouse BAC browser

no map image available.



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-048N23.bB6Ng01-048N23.g
ACCDH873302DH873303
length8921,121
definitionDH873302|Mus musculus domesticus DNA, BAC clone: B6Ng01-048N23, 5' end.DH873303|Mus musculus domesticus DNA, BAC clone: B6Ng01-048N23, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(90,379,488 - 90,380,379)(90,433,787 - 90,434,928)
sequence
gaattcagcaagaggaaacaaaatgaaaacgagaataggaaagcttgcat
ttttttttttgagtccttagccacatggactctaaagctttgcttcaaat
cacctaaagtgtgcctcttgaaagctcccttgagaaaatgcgctgactcc
tttacgctaatgaacaactcatctatttccataaaacaagatacaagtta
cccagtgagttacactgaatgcagataaaatgattgactaccaaatcgct
taccttgtggactaatactgtctctaaggaagaatatttgaattgtttca
cacacacacacacacacacacacacacacacacacacacacacactggat
tcatccctaaagtatttgtcgacctaaaacataccttaatttgtattcct
atttaaaaaaataaatgcgccatttagatcctaatagtttttttaatcta
attggctgtaaatgtagattcacatttattgcctagaataatgactccat
ccataagaatattcttgtagaactggcttacggagcagccaagcttctaa
tcagttgtctaaatcattcttagtttttaccaccacaaatatcttctttt
ggttaccacttatgacaggtaaagtttatataacatttgaaactgggggc
aatttaaagaggccagttaaatcagagactcttgggtagggtgggatggc
tctagggttaagcatgcttttcaaaggattcctgtataggtcttaacacc
ctgtttgacagtatctcaactgtctgtcttccaactcaagggtatctaac
accctcttctgggctctgtgagtattttgcatgcatttgacatttattca
caaagacctgtacactaaaatagaacgaggagaggaggagga
gaattcttagtccctagtaaaatggaacgtttattttaaacgaaagagat
ccatcaccatacatggctgcataaatatgcatcactcaacaggcattaca
taaataatgttggtttactctggctgctgcaatggaaaacatttttccca
taaatttatagatattctctgaacatggtgtgtgtgatcaagctttatgg
aaagtaagcattttctcaactaaaaaagtattctcagtaatttttgattc
tgtattactacccactaaaatcattctctatttgttgactattgacttaa
ttttaacttttctggttttacatctatatacttaaacatagttttagttt
aacacacactgtgtagtagtgaagtataggttactcacttgttttgcata
atgtttgaatgatgttcatagcaataaattatcaaggtgagaaaataatt
tttaggttgcagggtgatgcctctgtaaaaattgatcacatgacataaac
atctaaaagaataattcttggtttcataaaagagaaagatatcactaatc
tgctttaatcaacaaggcaaaaaaatgcaaaacatcttttgtgataattt
agttgatgaaaaacatgccgagatgtggcctggatttcagacacaacact
accttagaaatacatagatatcatagcaaatcactatgaggtacagctgc
caagaaattgtgtaataagtcttaaaggcttttcatcacccaaaaaatag
atggcacgaagttaaaattcagtacccatttcttctctttcaagtcttca
tatatatttaatttgccaggttaaaagatcttacaagtctttttacctac
ccctctcattcagtcttactcaggaaagccagagaaataaaaggaacata
aaaccacaatttacatatctatattgatatagatagaaatatatattcca
ttgtatctatttacataactagtttcatttgaacagattttaaagatgtg
aaactaattgaatgttacttttaaatgtttatctggagccttgttgttaa
attgattcatgttcctcccgcaagaaattaaaattctactttcattgatg
aaactgatatgctggtaaaaa
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr17_90379488_90380379
seq2: B6Ng01-048N23.b_44_935

seq1  GAATTCAGCAAGAGGAAACAAAATGAAAACGAGAATAGGAAAGCTTGCAT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAGCAAGAGGAAACAAAATGAAAACGAGAATAGGAAAGCTTGCAT  50

seq1  TTTTTTTTTTGAGTCCTTAGCCACATGGACTCTAAAGCTTTGCTTCAAAT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTTTTTTGAGTCCTTAGCCACATGGACTCTAAAGCTTTGCTTCAAAT  100

seq1  CACCTAAAGTGTGCCTCTTGAAAGCTCCCTTGAGAAAATGCGCTGACTCC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACCTAAAGTGTGCCTCTTGAAAGCTCCCTTGAGAAAATGCGCTGACTCC  150

seq1  TTTACGCTAATGAACAACTCATCTATTTCCATAAAACAAGATACAAGTTA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTACGCTAATGAACAACTCATCTATTTCCATAAAACAAGATACAAGTTA  200

seq1  CCCAGTGAGTTACACTGAATGCAGATAAAATGATTGACTACCAAATCGCT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCAGTGAGTTACACTGAATGCAGATAAAATGATTGACTACCAAATCGCT  250

seq1  TACCTTGTGGACTAATACTGTCTCTAAGGAAGAATATTTGAATTGTTTCA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACCTTGTGGACTAATACTGTCTCTAAGGAAGAATATTTGAATTGTTTCA  300

seq1  CACACACACACACACACACACACACACACACACACACACACACACTGGAT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACACACACACACACACACACACACACACACACACACACACACACTGGAT  350

seq1  TCATCCCTAAAGTATTTGTCGACCTAAAACATACCTTAATTTGTATTCCT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATCCCTAAAGTATTTGTCGACCTAAAACATACCTTAATTTGTATTCCT  400

seq1  ATTTAAAAAAATAAATGCGCCATTTAGATCCTAATAGTTTTTTTAATCTA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTAAAAAAATAAATGCGCCATTTAGATCCTAATAGTTTTTTTAATCTA  450

seq1  ATTGGCTGTAAATGTAGATTCACATTTATTGCCTAGAATAATGACTCCAT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTGGCTGTAAATGTAGATTCACATTTATTGCCTAGAATAATGACTCCAT  500

seq1  CCATAAGAATATTCTTGTAGAACTGGCTTACGGAGCAGCCAAGCTTCTAA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCATAAGAATATTCTTGTAGAACTGGCTTACGGAGCAGCCAAGCTTCTAA  550

seq1  TCAGTTGTCTAAATCATTCTTAGTTTTTACCACCACAAATATCTTCTTTT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGTTGTCTAAATCATTCTTAGTTTTTACCACCACAAATATCTTCTTTT  600

seq1  GGTTACCACTTATGACAGGTAAAGTTTATATAACATTTGAAACTGGGGGC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTTACCACTTATGACAGGTAAAGTTTATATAACATTTGAAACTGGGGGC  650

seq1  AATTTAAAGAGGCCAGTTAAATCAGAGACTCTTGGGTAGGGTGGGATGGC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTTAAAGAGGCCAGTTAAATCAGAGACTCTTGGGTAGGGTGGGATGGC  700

seq1  TCTAGGGTTAAGCATGCTTTTCAAAGGATTCCTGTATAGGTCTTAACACC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTAGGGTTAAGCATGCTTTTCAAAGGATTCCTGTATAGGTCTTAACACC  750

seq1  CTG-TTGACAGTATCTCAACTGTCTGTCTTCCAACTCAAGGGTATCTAAC  799
      ||| ||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTTTGACAGTATCTCAACTGTCTGTCTTCCAACTCAAGGGTATCTAAC  800

seq1  ACCCTCTTCTGGGCTCTGTGAGTATTTTGCATGCATTTGACATTTATTCA  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCCTCTTCTGGGCTCTGTGAGTATTTTGCATGCATTTGACATTTATTCA  850

seq1  CAAAGACCTGTACACTAAAATAGAAGGAGGAGGAGGAGGAGGA  892
      ||||||||||||||||||||||||| ||||| |||||||||||
seq2  CAAAGACCTGTACACTAAAATAGAACGAGGA-GAGGAGGAGGA  892

seq1: chr17_90433787_90434928
seq2: B6Ng01-048N23.g_65_1185 (reverse)

seq1  TTTTTACCAGCATTATCAGTTTTTATCAATGAATG-AGATTTTAAATTTC  49
      |||||||||||| |||||| ||| ||||||||| | ||| ||| ||||||
seq2  TTTTTACCAGCA-TATCAG-TTTCATCAATGAAAGTAGAATTTTAATTTC  48

seq1  TTGCTGGGAAGAAACACTGAAATCAATTTTAAACAACAAGCCTCCCAGAT  99
      ||||  || || |||| || |||||||||  ||||||||| || ||||||
seq2  TTGC--GGGAGGAACA-TG-AATCAATTT--AACAACAAGGCT-CCAGAT  91

seq1  ATACCATTTAAAAAGTAACAATTCAATTTAGTTTTCCACCATCTTTTATA  149
      | | ||||| ||||||||| |||||| |||||||  || |||| |||| |
seq2  A-AACATTT-AAAAGTAAC-ATTCAA-TTAGTTT--CA-CATC-TTTAAA  133

seq1  ATCTGTTCAGATGAAACTAGTTTATGTTAAATAGATACAATGGAATATAT  199
      ||||||||| |||||||||| ||||| |||||||||||||||||||||||
seq2  ATCTGTTCAAATGAAACTAG-TTATG-TAAATAGATACAATGGAATATAT  181

seq1  ATTTCTATCTATATCAATATAGATATGTAAATTGGTGGTTTTATGTTCCT  249
      ||||||||||||||||||||||||||||||||| ||||||||||||||| 
seq2  ATTTCTATCTATATCAATATAGATATGTAAATT-GTGGTTTTATGTTCC-  229

seq1  TTTTATTTCTCTGGCTTTTCCTGAGTAAGACTGAATGAGAGGGGTAGGTA  299
      ||||||||||||||| ||||||||||||||||||||||||||||||||||
seq2  TTTTATTTCTCTGGC-TTTCCTGAGTAAGACTGAATGAGAGGGGTAGGTA  278

seq1  AAAAGACTTGTAAGATCTTTTAACCTGGCAAATTAAATATATATGAAGAC  349
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAGACTTGTAAGATCTTTTAACCTGGCAAATTAAATATATATGAAGAC  328

seq1  TTGAAAGAGAAGAAATGGGTACTGAATTTTAACTTCGTGCCATCTATTTT  399
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGAAAGAGAAGAAATGGGTACTGAATTTTAACTTCGTGCCATCTATTTT  378

seq1  TTGGGTGATGAAAAGCCTTTAAGACTTATTACACAATTTCTTGGCAGCTG  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGGGTGATGAAAAGCCTTTAAGACTTATTACACAATTTCTTGGCAGCTG  428

seq1  TACCTCATAGTGATTTGCTATGATATCTATGTATTTCTAAGGTAGTGTTG  499
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACCTCATAGTGATTTGCTATGATATCTATGTATTTCTAAGGTAGTGTTG  478

seq1  TGTCTGAAATCCAGGCCACATCTCGGCATGTTTTTCATCAACTAAATTAT  549
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTCTGAAATCCAGGCCACATCTCGGCATGTTTTTCATCAACTAAATTAT  528

seq1  CACAAAAGATGTTTTGCATTTTTTTGCCTTGTTGATTAAAGCAGATTAGT  599
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACAAAAGATGTTTTGCATTTTTTTGCCTTGTTGATTAAAGCAGATTAGT  578

seq1  GATATCTTTCTCTTTTATGAAACCAAGAATTATTCTTTTAGATGTTTATG  649
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATATCTTTCTCTTTTATGAAACCAAGAATTATTCTTTTAGATGTTTATG  628

seq1  TCATGTGATCAATTTTTACAGAGGCATCACCCTGCAACCTAAAAATTATT  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATGTGATCAATTTTTACAGAGGCATCACCCTGCAACCTAAAAATTATT  678

seq1  TTCTCACCTTGATAATTTATTGCTATGAACATCATTCAAACATTATGCAA  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTCACCTTGATAATTTATTGCTATGAACATCATTCAAACATTATGCAA  728

seq1  AACAAGTGAGTAACCTATACTTCACTACTACACAGTGTGTGTTAAACTAA  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACAAGTGAGTAACCTATACTTCACTACTACACAGTGTGTGTTAAACTAA  778

seq1  AACTATGTTTAAGTATATAGATGTAAAACCAGAAAAGTTAAAATTAAGTC  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTATGTTTAAGTATATAGATGTAAAACCAGAAAAGTTAAAATTAAGTC  828

seq1  AATAGTCAACAAATAGAGAATGATTTTAGTGGGTAGTAATACAGAATCAA  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATAGTCAACAAATAGAGAATGATTTTAGTGGGTAGTAATACAGAATCAA  878

seq1  AAATTACTGAGAATACTTTTTTAGTTGAGAAAATGCTTACTTTCCATAAA  949
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATTACTGAGAATACTTTTTTAGTTGAGAAAATGCTTACTTTCCATAAA  928

seq1  GCTTGATCACACACACCATGTTCAGAGAATATCTATAAATTTATGGGAAA  999
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTTGATCACACACACCATGTTCAGAGAATATCTATAAATTTATGGGAAA  978

seq1  AATGTTTTCCATTGCAGCAGCCAGAGTAAACCAACATTATTTATGTAATG  1049
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGTTTTCCATTGCAGCAGCCAGAGTAAACCAACATTATTTATGTAATG  1028

seq1  CCTGTTGAGTGATGCATATTTATGCAGCCATGTATGGTGATGGATCTCTT  1099
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGTTGAGTGATGCATATTTATGCAGCCATGTATGGTGATGGATCTCTT  1078

seq1  TCGTTTAAAATAAACGTTCCATTTTACTAGGGACTAAGAATTC  1142
      |||||||||||||||||||||||||||||||||||||||||||
seq2  TCGTTTAAAATAAACGTTCCATTTTACTAGGGACTAAGAATTC  1121