BAC Information

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BAC

Clone NameB6Ng01-048O01
Chromosome17 (Build37)
Map Location 61,050,771 - 61,167,602
singlet/doubletdoublet
Overlap genenone
Upstream geneLOC100043549
Downstream geneLOC433129, EG620725, LOC100043560
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-048O01.bB6Ng01-048O01.g
ACCDH873304DH873305
length1,152724
definitionDH873304|Mus musculus domesticus DNA, BAC clone: B6Ng01-048O01, 5' end.DH873305|Mus musculus domesticus DNA, BAC clone: B6Ng01-048O01, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(61,050,771 - 61,051,814)(61,167,056 - 61,167,602)
sequence
gaattcattgttttcaatagctgagtagcactcctttgtataaatgtacc
aaactttctgaatctattcctctgtttgagggacatctgggttctttcca
gcttctggctattataaataaggctgctatgaacatagtggagcatgtgt
ccttattacaagttggaacatcttcttggtatctgcccaggagaggtatt
gctggatgttccaatagtactatgtccaattttctgaggaaccaccagac
tgatttccagagtggttgtatctgctttcaatcccaccaacaatggagaa
gtgtttctctttctccacatccttgccaggatctgctgtcacctgaattt
ttgatcttagcttcactggtgtgaggtagaatctcagggttgttttgatt
tgcatttccctgataactaaggatgttgaaattatttttaggtgcctctc
agccatttgttattcctcagttgagaattctttgtttagctctgtacccc
atttttagtatggtttggttgtctggagtttaacttcttgagttcttttt
ggttattagccctctgtcagatgtagggttggtattccaactcaactctt
cacagagttagaaagagcagtttgctaattcatagattataattagatac
cttctcaactggaggttagcatgtagaagaatccaaatatatccattcta
gtctccttgaacaaagctcaagtccaaggggatcaagggcctgcacataa
aaccagacactctgaaattaatagaagagaaagtggggaagagctttgag
catgtggacacaggggaaattttcctgaacagaaccccaatagcttatgc
tctaagatcaaagttgacagtgggacctcataaaattacaaagcttctgt
aaggcaaaggacactgtcaatagaacaaaatggcaccaacggattgggaa
aaaatcctcaccaattctacattctggcagcaagtatctttaggtgaaaa
gtattttcaacctctttacttggtatataatttatctccaggataaaata
atttcttttggttcgagcctcctcatcaaggtagggatgtaacttcttta
gggatttccaaatgaccatacacaatcaaaatgacatgcttggtaaataa
ta
gaattccatttgaccaggggacaggtaggtattaggcttttatatttaaa
aatgccacaaataaaaatataaaactcttggaatatgctgaactgagtac
atgctattccttcatattggtgactttcatccttagaatgctgtggtatt
gttttctgctcatatgactaaacaatttcaaactccttttatgtaaaaac
caaaccaaccaaccaaccaaacaaacaagcaaagcaaagcaaagcaaagc
aaagcaaagcaaagcaaagcaaagcaaaacaaagcaaagcaaagcaaagc
aaagcaaagcaaagcaaagcaaagcaaaacaaaacacacacacacacaca
cacacacacacacacacgcacgcacatgcacatgtacacacaatccaaac
aaaaacagacaagaaaacaaacaattgtttacatgattcagtataatatt
gaatgaaaagcaaatgataccaaatgaaacaacaagcaaatttcagacag
tcatggcacaaaacttttatcccagtacttcagaggcagaggcaagcaaa
tctcttgatttcgaggccaatctagtttacaaagcaaagtccaggacagc
caaggttgtaccaagaaaccctgtcttgaaacaaaacaaaacaaaagtga
gaagtagcatcttacacgcgttctcacgaccggccaggaagacacaacaa
accagaatcttctgcggcaaaact
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr17_61050771_61051814
seq2: B6Ng01-048O01.b_174_1195

seq1  GAACATAGTGGAGCATGTGTCCTTATTACAAGTTGGAACATCTTCTTGGT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAACATAGTGGAGCATGTGTCCTTATTACAAGTTGGAACATCTTCTTGGT  50

seq1  ATCTGCCCAGGAGAGGTATTGCTGGATGTTCCAATAGTACTATGTCCAAT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTGCCCAGGAGAGGTATTGCTGGATGTTCCAATAGTACTATGTCCAAT  100

seq1  TTTCTGAGGAACCACCAGACTGATTTCCAGAGTGGTTGTATCTGCTTTCA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCTGAGGAACCACCAGACTGATTTCCAGAGTGGTTGTATCTGCTTTCA  150

seq1  ATCCCACCAACAATGGAGAAGTGTTTCTCTTTCTCCACATCCTTGCCAGG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCCCACCAACAATGGAGAAGTGTTTCTCTTTCTCCACATCCTTGCCAGG  200

seq1  ATCTGCTGTCACCTGAATTTTTGATCTTAGCTTCACTGGTGTGAGGTAGA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTGCTGTCACCTGAATTTTTGATCTTAGCTTCACTGGTGTGAGGTAGA  250

seq1  ATCTCAGGGTTGTTTTGATTTGCATTTCCCTGATAACTAAGGATGTTGAA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTCAGGGTTGTTTTGATTTGCATTTCCCTGATAACTAAGGATGTTGAA  300

seq1  ATTATTTTTAGGTGCCTCTCAGCCATTTGTTATTCCTCAGTTGAGAATTC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTATTTTTAGGTGCCTCTCAGCCATTTGTTATTCCTCAGTTGAGAATTC  350

seq1  TTTGTTTAGCTCTGTACCCCATTTTTAGTATGGTTTGGTTGTCTGGAGTT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGTTTAGCTCTGTACCCCATTTTTAGTATGGTTTGGTTGTCTGGAGTT  400

seq1  TAACTTCTTGAGTTCTTTTTGGTTATTAGCCCTCTGTCAGATGTAGGGTT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAACTTCTTGAGTTCTTTTTGGTTATTAGCCCTCTGTCAGATGTAGGGTT  450

seq1  GGTATTCCAACTCAACTCTTCACAGAGTTAGAAAGAGCAGTTTGCTAATT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTATTCCAACTCAACTCTTCACAGAGTTAGAAAGAGCAGTTTGCTAATT  500

seq1  CATAGATTATAATTAGATACCTTCTCAACTGGAGGTTAGCATGTAGAAGA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATAGATTATAATTAGATACCTTCTCAACTGGAGGTTAGCATGTAGAAGA  550

seq1  ATCCAAATATATCCATTCTAGTCTCCTTGAACAAAGCTCAAGTCCAAGGG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCCAAATATATCCATTCTAGTCTCCTTGAACAAAGCTCAAGTCCAAGGG  600

seq1  GATCAAGGGCCTGCACATAAAACCAGACACTCTGAAATTAATAGAAGAGA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATCAAGGGCCTGCACATAAAACCAGACACTCTGAAATTAATAGAAGAGA  650

seq1  AAGTGGGGAAGAGCTTTGAGCATGTGGACACAGGGGAAATTTTCCTGAAC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTGGGGAAGAGCTTTGAGCATGTGGACACAGGGGAAATTTTCCTGAAC  700

seq1  AGAACCCCAATAGCTTATGCTCTAAGATCAAAAGTTGACAGGTGGGACCT  750
      ||||||||||||||||||||||||||||| |||||||||| |||||||||
seq2  AGAACCCCAATAGCTTATGCTCTAAGATC-AAAGTTGACA-GTGGGACCT  748

seq1  CATAAAATTACAAAGCTTCTGTAAGGCAAAGGACACTGTCAATAGAACAA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATAAAATTACAAAGCTTCTGTAAGGCAAAGGACACTGTCAATAGAACAA  798

seq1  AATGGCAACCAACGGATTGGGAAAAAATCCTCACCAATTCTACA-TCTGG  849
      |||||| ||||||||||||||||||||||||||||||||||||| |||||
seq2  AATGGC-ACCAACGGATTGGGAAAAAATCCTCACCAATTCTACATTCTGG  847

seq1  CAGCAAGTACTCTTAGGTGATAAGTTATTTTTCAAACCTCTTTACTTGGT  899
      |||||||||   |||||||| ||| ||||||   ||||||||||||||||
seq2  CAGCAAGTATCTTTAGGTGAAAAG-TATTTT--CAACCTCTTTACTTGGT  894

seq1  AATATAATTTATCTCAAGTAATAAATAATTATCTTTATGTTCAGAGCCTA  949
       |||||||||||||| || |  |||||||| |||||  |||| |||||| 
seq2  -ATATAATTTATCTCCAGGATAAAATAATT-TCTTTTGGTTC-GAGCCT-  940

seq1  CATCATTCAAAGGTAGGATTTGTAACTTCTTTATGGAATTTCCAATATGA  999
      | ||||   ||||||||   ||||||||||||| || |||||||| ||||
seq2  CCTCAT--CAAGGTAGG-GATGTAACTTCTTTA-GGGATTTCCAA-ATGA  985

seq1  CTAATAACAACAATACTAATAAATGACATGCTTGGTAAATTAATA  1044
      | |   ||||  |       ||||||||||||||||||| |||||
seq2  CCATACACAATCA-------AAATGACATGCTTGGTAAA-TAATA  1022

seq1: chr17_61167056_61167602
seq2: B6Ng01-048O01.g_65_611 (reverse)

seq1  GCTTGCCTCTGCCTCTGAAGTACTGGGATAAAAGTTTTGTGCCATGACTG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTTGCCTCTGCCTCTGAAGTACTGGGATAAAAGTTTTGTGCCATGACTG  50

seq1  TCTGAAATTTGCTTGTTGTTTCATTTGGTATCATTTGCTTTTCATTCAAT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGAAATTTGCTTGTTGTTTCATTTGGTATCATTTGCTTTTCATTCAAT  100

seq1  ATTATACTGAATCATGTAAACAATTGTTTGTTTTCTTGTCTGTTTTTGTT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTATACTGAATCATGTAAACAATTGTTTGTTTTCTTGTCTGTTTTTGTT  150

seq1  TGGATTGTGTGTACATGTGCATGTGCGTGCGTGTGTGTGTGTGTGTGTGT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGATTGTGTGTACATGTGCATGTGCGTGCGTGTGTGTGTGTGTGTGTGT  200

seq1  GTGTGTGTGTGTGTTTTGTTTTGCTTTGCTTTGCTTTGCTTTGCTTTGCT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTGTGTGTGTGTTTTGTTTTGCTTTGCTTTGCTTTGCTTTGCTTTGCT  250

seq1  TTGCTTTGCTTTGCTTTGTTTTGCTTTGCTTTGCTTTGCTTTGCTTTGCT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGCTTTGCTTTGCTTTGTTTTGCTTTGCTTTGCTTTGCTTTGCTTTGCT  300

seq1  TTGCTTTGCTTTGCTTTGCTTGTTTGTTTGGTTGGTTGGTTGGTTTGGTT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGCTTTGCTTTGCTTTGCTTGTTTGTTTGGTTGGTTGGTTGGTTTGGTT  350

seq1  TTTACATAAAAGGAGTTTGAAATTGTTTAGTCATATGAGCAGAAAACAAT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTACATAAAAGGAGTTTGAAATTGTTTAGTCATATGAGCAGAAAACAAT  400

seq1  ACCACAGCATTCTAAGGATGAAAGTCACCAATATGAAGGAATAGCATGTA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCACAGCATTCTAAGGATGAAAGTCACCAATATGAAGGAATAGCATGTA  450

seq1  CTCAGTTCAGCATATTCCAAGAGTTTTATATTTTTATTTGTGGCATTTTT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCAGTTCAGCATATTCCAAGAGTTTTATATTTTTATTTGTGGCATTTTT  500

seq1  AAATATAAAAGCCTAATACCTACCTGTCCCCTGGTCAAATGGAATTC  547
      |||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATATAAAAGCCTAATACCTACCTGTCCCCTGGTCAAATGGAATTC  547