BAC Information

Click to search

BAC

Clone NameB6Ng01-049C01
Chromosome17 (Build37)
Map Location 90,710,236 - 90,860,937
singlet/doubletdoublet
Overlap geneNrxn1
Upstream geneLOC100043904, LOC100043906
Downstream geneEG668871, LOC668872, LOC627235
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-049C01.bB6Ng01-049C01.g
ACCDH873480DH873481
length1,0261,092
definitionDH873480|Mus musculus domesticus DNA, BAC clone: B6Ng01-049C01, 5' end.DH873481|Mus musculus domesticus DNA, BAC clone: B6Ng01-049C01, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(90,710,236 - 90,711,276)(90,859,821 - 90,860,937)
sequence
gaattctctgttgtccatgttacttgtgtcaggactgagaagcagtgatt
gaggagagagatttatattggaggagggtttatatttatggacaagccca
ccttaatcagaacgggttaggaagggaattacagcccagcacaggctgtg
gtactggagtgaaagagtgagaattttttgcatggaattttaaaaggtat
gtttgcattgatgtaattaagttaccagcaatgacagaatatgtttctat
gtatagcattttataactgggctataaaattgcatatttaactaaaactg
gacagttttttgaatagaaattatttttcaaacatcattaatattcttca
cctcctccttaatgaatatcaaatgaatattaaaaacttgaatatgattt
tacttctaccagttacctcatcacgttcttaaagatatttacaagtaaat
ttatagcaaataataagtagatattaatcacttcacaaatattaatcata
attcttccagataagagaaacagtcaccttccatataagagtgagaatca
agagctcacatttcactgagtggcactctttctccatcattgcaaagtgc
tctcagccaacatcgattatcctcaagtatttatttaacatgtaaatatt
tacactaaaatacatagcccactgagaatagagaagatcaaagattagga
tataaaggaatagagattaggataacccagtgataaccacattgtctagc
taaaagatgtaggtattcctatacaatgacctctgggaataagtcaccta
gatgaaattcaagacactacaataatgatagttcaaacatagagtgcttc
aaatttcagtcttcaaaaacacttttcactgaaatccttaagaagtagtg
tctctctctctgttaacataatagatgtgatacagttcttacacatggct
gattatagctgccttctggatatgaacgtatctaatctgctaagacccat
gagatgtgtactatttagtctcattt
gaattccacacttggatttcaccggagtgaattgcgtgtcatgttggctc
atgctaaacttgggctactctccctgatttatattactcagaagactctt
aagtaatagacagattgactatacataccaggctgtgtctgtgattggat
gatggctgtttggggatgaaaacgaacttctatatctatatacaaactac
acacaaaatgacgattctgctacagttttaccagtattaagggaaaaaca
acaacaacaaagggatcgcagtagatgcccaagggtgcttttttaactgt
ggaatgtggatttcctcccttcctttcttagtgtccttgttcttctgtac
tgatcaatctcaaaatacccttcaggacctaacatcatatatagaggtaa
taagaccaggagtttacctttaatagagttctcaccgactatacttttgt
gagtccttccctcttttctccttcagttctgagtacaaacgggtggaaat
atggggtcaagactgacatctcctcatttttatttttaaaagattagtgc
tgcctgtgggttttaatatacttcccctctgctacattaatgtctacttt
cctatttaaaaagcttaatactgagccatagggatttccaattaagctta
agaaagccatgaaaagcaaccattctgttctttaagatagaaagtgtaac
tttgggatatgagaaaataatttgaaatggccattcctgttctatatcct
tccaaatttcactcactcttccgtcccatttcctttccctcccttctccg
tcctgaaaaagcttattttcactgctgaacgcttattgtcatcccaggct
attcatgtggttgtcatggtagatcattgtttgagttatcttgggatgat
taaacgcacaaatctatctggtctttgggtagtagtcaggagctagagtg
ttaggaggcgagtgagttaccctcttacagatcccgatagaatatagtga
tgcagacataatcagttctattgagaacgaacttattacacggtgcatga
atttgtcgctctttgaaggtgtagggagttttgtctttctct
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr17_90710236_90711276
seq2: B6Ng01-049C01.b_43_1068

seq1  GAATTCTCTGTTGTCCATGTTACTTGTGTCAGGACTGAGAAGCAGTGATT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTCTGTTGTCCATGTTACTTGTGTCAGGACTGAGAAGCAGTGATT  50

seq1  GAGGAGAGAGATTTATATTGGAGGAGGGTTTATATTTATGGACAAGCCCA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGGAGAGAGATTTATATTGGAGGAGGGTTTATATTTATGGACAAGCCCA  100

seq1  CCTTAATCAGAACGGGTTAGGAAGGGAATTACAGCCCAGCACAGGCTGTG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTAATCAGAACGGGTTAGGAAGGGAATTACAGCCCAGCACAGGCTGTG  150

seq1  GTACTGGAGTGAAAGAGTGAGAATTTTTTGCATGGAATTTTAAAAGGTAT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTACTGGAGTGAAAGAGTGAGAATTTTTTGCATGGAATTTTAAAAGGTAT  200

seq1  GTTTGCATTGATGTAATTAAGTTACCAGCAATGACAGAATATGTTTCTAT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTGCATTGATGTAATTAAGTTACCAGCAATGACAGAATATGTTTCTAT  250

seq1  GTATAGCATTTTATAACTGGGCTATAAAATTGCATATTTAACTAAAACTG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTATAGCATTTTATAACTGGGCTATAAAATTGCATATTTAACTAAAACTG  300

seq1  GACAGTTTTTTGAATAGAAATTATTTTTCAAACATCATTAATATTCTTCA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACAGTTTTTTGAATAGAAATTATTTTTCAAACATCATTAATATTCTTCA  350

seq1  CCTCCTCCTTAATGAATATCAAATGAATATTAAAAACTTGAATATGATTT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTCCTCCTTAATGAATATCAAATGAATATTAAAAACTTGAATATGATTT  400

seq1  TACTTCTACCAGTTACCTCATCACGTTCTTAAAGATATTTACAAGTAAAT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACTTCTACCAGTTACCTCATCACGTTCTTAAAGATATTTACAAGTAAAT  450

seq1  TTATAGCAAATAATAAGTAGATATTAATCACTTCACAAATATTAATCATA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATAGCAAATAATAAGTAGATATTAATCACTTCACAAATATTAATCATA  500

seq1  ATTCTTCCAGATAAGAGAAACAGTCACCTTCCATATAAGAGTGAGAATCA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTCTTCCAGATAAGAGAAACAGTCACCTTCCATATAAGAGTGAGAATCA  550

seq1  AGAGCTCACATTTCACTGAGTGGCACTCTTTCTCCATCATTGCAAAGTGC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGCTCACATTTCACTGAGTGGCACTCTTTCTCCATCATTGCAAAGTGC  600

seq1  TCTCAGCCAACATCGATTATCCTCAAGTATTTATTTAACATGTAAATATT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCAGCCAACATCGATTATCCTCAAGTATTTATTTAACATGTAAATATT  650

seq1  TACACTAAAATACATAGCCCACTGAGAATAGAGAAGATCAAAGATTAGGA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACACTAAAATACATAGCCCACTGAGAATAGAGAAGATCAAAGATTAGGA  700

seq1  TATAAAGGAATAGAGATTAGGATAACCCAGTGATAACCACATTGTCTAGC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATAAAGGAATAGAGATTAGGATAACCCAGTGATAACCACATTGTCTAGC  750

seq1  TAAAAGATGTAGGTATTCCTATACAATGACCTCTGGGAATAAGTCACCTA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAAAGATGTAGGTATTCCTATACAATGACCTCTGGGAATAAGTCACCTA  800

seq1  GATGAAATTCAAGGACAACTACAATAATGATAGTTCAAAACATAGAAGTG  850
      |||||||||||| ||| ||||||||||||||||||| |||||||| ||||
seq2  GATGAAATTCAA-GAC-ACTACAATAATGATAGTTC-AAACATAG-AGTG  846

seq1  CTCCAAAATTTCAGTCTTCAAAAAAACACTTTTCACTGAAATCCTTAAGA  900
      || | ||||||||||||||  |||||||||||||||||||||||||||||
seq2  CTTC-AAATTTCAGTCTTC--AAAAACACTTTTCACTGAAATCCTTAAGA  893

seq1  AGTAGTGTCTCTCTCTTCTGTTAACATAATAGATGTTGATACAGTTCTTA  950
      ||||||||||||||| ||||||||||||||||||| ||||||||||||||
seq2  AGTAGTGTCTCTCTC-TCTGTTAACATAATAGATG-TGATACAGTTCTTA  941

seq1  CAACATGGCTGATTATAGCTGCCTTCTGGATATGAACGTATCTAATTCTG  1000
      | ||||||||||||||||||||||||||||||||||||||||||| ||||
seq2  C-ACATGGCTGATTATAGCTGCCTTCTGGATATGAACGTATCTAA-TCTG  989

seq1  CTAAAGACCCCATGAGATGTGTACATATGTAGTCTCCATTT  1041
      || |||| |||||||||||||||| ||| |||||| |||||
seq2  CT-AAGA-CCCATGAGATGTGTAC-TATTTAGTCT-CATTT  1026

seq1: chr17_90859821_90860937
seq2: B6Ng01-049C01.g_66_1157 (reverse)

seq1  AGAGAAAAGACTATAAACT-CCTCAACCTTCCAAAAAGAGCTATACAATT  49
      |||| ||||||   ||||| |||  ||||||   |||||||   |||| |
seq2  AGAG-AAAGAC--AAAACTCCCTACACCTTC---AAAGAGC--GACAAAT  42

seq1  TCATGCACAGTTATTATTAAGTTCTGTTTCTACAATAGAAACTGATCTAT  99
      |||||||| ||   || |||||||   |||| |||||| ||||||| |||
seq2  TCATGCACCGT--GTAATAAGTTC--GTTCT-CAATAG-AACTGAT-TAT  85

seq1  GTCTTGCATTCACTATAATCTATTTGGGGATCTGT-AGAGGGTTAACCTT  148
      ||| |||| |||||||| ||||  | ||||||||| |||||| ||||  |
seq2  GTC-TGCA-TCACTATATTCTA--TCGGGATCTGTAAGAGGG-TAAC--T  128

seq1  CACTCGCCT-CTAACAACTCTAGCTCCTGACTACTACCCAAAGGAACCAG  197
      ||||||||| ||||| |||||||||||||||||||||||||||  |||||
seq2  CACTCGCCTCCTAAC-ACTCTAGCTCCTGACTACTACCCAAAG--ACCAG  175

seq1  ATAGATTTGTGCGTTTAATCATCCCAAGATAACTCAAACAATGATCTACC  247
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAGATTTGTGCGTTTAATCATCCCAAGATAACTCAAACAATGATCTACC  225

seq1  ATGAACAACCACATGAATAGCCTGGGATGGACAAT-AGCGTTCAGCAGTG  296
      ||| |||||||||||||||||||||||| |||||| ||||||||||||||
seq2  ATG-ACAACCACATGAATAGCCTGGGAT-GACAATAAGCGTTCAGCAGTG  273

seq1  AAAAATAAGCTTTTTCAGGACGGAGAAGGGAGGGAAAAGGAAATGGGACG  346
       ||||||||||||||||||||||||||||||||| |||||||||||||||
seq2  -AAAATAAGCTTTTTCAGGACGGAGAAGGGAGGG-AAAGGAAATGGGACG  321

seq1  GAAGAGTGAGTGAAATTTGGAAGGATATAGAACAGGAATGGCCATTTCAA  396
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGAGTGAGTGAAATTTGGAAGGATATAGAACAGGAATGGCCATTTCAA  371

seq1  ATTATTTTCTCATATCCCAAAGTTACACTTTCTATCTTAAAGAACAGAAT  446
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTATTTTCTCATATCCCAAAGTTACACTTTCTATCTTAAAGAACAGAAT  421

seq1  GGTTGCTTTTCATGGCTTTCTTAAGCTTAATTGGAAATCCCTATGGCTCA  496
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTTGCTTTTCATGGCTTTCTTAAGCTTAATTGGAAATCCCTATGGCTCA  471

seq1  GTATTAAGCTTTTTAAATAGGAAAGTAGACATTAATGTAGCAGAGGGGAA  546
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTATTAAGCTTTTTAAATAGGAAAGTAGACATTAATGTAGCAGAGGGGAA  521

seq1  GTATATTAAAACCCACAGGCAGCACTAATCTTTTAAAAATAAAAATGAGG  596
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTATATTAAAACCCACAGGCAGCACTAATCTTTTAAAAATAAAAATGAGG  571

seq1  AGATGTCAGTCTTGACCCCATATTTCCACCCGTTTGTACTCAGAACTGAA  646
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATGTCAGTCTTGACCCCATATTTCCACCCGTTTGTACTCAGAACTGAA  621

seq1  GGAGAAAAGAGGGAAGGACTCACAAAAGTATAGTCGGTGAGAACTCTATT  696
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAGAAAAGAGGGAAGGACTCACAAAAGTATAGTCGGTGAGAACTCTATT  671

seq1  AAAGGTAAACTCCTGGTCTTATTACCTCTATATATGATGTTAGGTCCTGA  746
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGGTAAACTCCTGGTCTTATTACCTCTATATATGATGTTAGGTCCTGA  721

seq1  AGGGTATTTTGAGATTGATCAGTACAGAAGAACAAGGACACTAAGAAAGG  796
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGGTATTTTGAGATTGATCAGTACAGAAGAACAAGGACACTAAGAAAGG  771

seq1  AAGGGAGGAAATCCACATTCCACAGTTAAAAAAGCACCCTTGGGCATCTA  846
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGGAGGAAATCCACATTCCACAGTTAAAAAAGCACCCTTGGGCATCTA  821

seq1  CTGCGATCCCTTTGTTGTTGTTGTTTTTCCCTTAATACTGGTAAAACTGT  896
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGCGATCCCTTTGTTGTTGTTGTTTTTCCCTTAATACTGGTAAAACTGT  871

seq1  AGCAGAATCGTCATTTTGTGTGTAGTTTGTATATAGATATAGAAGTTCGT  946
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCAGAATCGTCATTTTGTGTGTAGTTTGTATATAGATATAGAAGTTCGT  921

seq1  TTTCATCCCCAAACAGCCATCATCCAATCACAGACACAGCCTGGTATGTA  996
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCATCCCCAAACAGCCATCATCCAATCACAGACACAGCCTGGTATGTA  971

seq1  TAGTCAATCTGTCTATTACTTAAGAGTCTTCTGAGTAATATAAATCAGGG  1046
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGTCAATCTGTCTATTACTTAAGAGTCTTCTGAGTAATATAAATCAGGG  1021

seq1  AGAGTAGCCCAAGTTTAGCATGAGCCAACATGACACGCAATTCACTCCGG  1096
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGTAGCCCAAGTTTAGCATGAGCCAACATGACACGCAATTCACTCCGG  1071

seq1  TGAAATCCAAGTGTGGAATTC  1117
      |||||||||||||||||||||
seq2  TGAAATCCAAGTGTGGAATTC  1092