BAC Information

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BAC

Clone NameB6Ng01-049E18
Chromosome17 (Build37)
Map Location 87,543,051 - 87,688,676
singlet/doubletdoublet
Overlap geneMcfd2, Ttc7
Upstream geneSrbd1, LOC545228, Prkce, Epas1, 1700090G07Rik, Atp6v1e2, Rhoq, Pigf, Cript, EG433144, Socs5
Downstream gene1700011E24Rik, Calm2, LOC100043727, Tacstd1, Msh2, Kcnk12, LOC626888, LOC668863, EG626920, Msh6, Fbxo11, EG225058
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-049E18.bB6Ng01-049E18.g
ACCDH873602DH873603
length1,049975
definitionDH873602|Mus musculus domesticus DNA, BAC clone: B6Ng01-049E18, 5' end.DH873603|Mus musculus domesticus DNA, BAC clone: B6Ng01-049E18, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(87,543,051 - 87,544,119)(87,687,697 - 87,688,676)
sequence
gaattctgtggcacatggagatagaataattcagtatccgctcgtacgtc
agagcagtttattcatagcaatttgtggtgctgggaatcaaagccagacc
gtgtgcgtatgaagcaagggttctactggggagctacctcctactcctta
ctgattgtggtgggaaagaacaattttcttccaagcatgttaacagtgtt
ccatacttgtggattattgtcagcctgagtgggctgtgccccggcttggc
tgctgttcatcggtgggtttctcattcccgacagggcctgatttctcacc
tgcttaacacggaggtgtggaaatatgaaaccaaataatcttggagatgt
gcatagcacagtgcctggcatgggtggctgttctcagtgtccttgtaccc
atctacacacaggaatccagagcgcctaagtgcaaggccagtcttccttt
ctctacgaaaggctccactaaaagataaattgaacccgtagttctaattg
aaagactgtttgttcaatatggggttttataaaaggacatagtcagaatg
ttgatacattacctctgagctttgtggaaaaaaaatttcataaaagtttc
ttgcttagaaaattactagggacacgggtagaataaagcacgctgtaatt
ctattgattttaatgctcataaaatgttttagttttccatcaggtaaaag
aatttgtctttgggaatcaatagaggcagggttgtagattcaagctttga
catcctggtagagatgtggcgatgcctgtggtcccatagtcttctctgag
tcagctgctgttgacctgtgttcaggccttcacataagagggtacaagca
catcagtgggggtcgacaccgcttcatctccagcacagtcaacaagaaag
aaactcaagccaccccactcacatccttagagcaacttaatccacataat
cactggatggctctctaactcagacgctgatgctggctggggatagagcg
attgtaagtgctaacccagcatgcatttgatctacccttgcatagctgg
gaattccttcgaggaatctcccttcctaacaacaccaagcggccctaaac
ctgaatcgcagccacacagtcagtcccacgagggtttgtcccaaggaagc
gtcgtcatcagatccagtgctgtcaacctcaggatttttaaaattaacat
cctgagaatttgcctttaaaagcacacctttccaactaccattgagtgct
gacgaaactcggagctgaagcaacttctagaagggattgcttggcaacac
cctacagatagatgcctttgcatatgtgtaaaacaacctacttgcaattc
ctcacccagcagcaggtagactaacaaaataaaacaaaacaaaaccaaaa
aaccctgagaggctttacgcccgtcaatgggtggctaattaaaattccat
acgtccataaaaaggggcatcctgcagccacaacatgggctgagggtgtt
ctgtatatgcaacggtgggaggaacttcaagctaaactggtaacagtgag
gaagaggcaggcagatctccgagtccgatgccaccctggtctacatagtg
agatcatggtgaggccctgtcaaaagaagaaaggaagcaagcaagtagag
tggggaggtcatggtagtgacacccctttattcccaatagcagcatcaga
tctctgcaagtcccaggctagcctagtctaaatatcgagttccgggccag
ctacagctactttgtgagacactgcctcataaaagaaagatggaaaaaag
aagagcgcacaacagtgctggcagtcgcagaggtcgactctcggttccaa
attcccagccctggaagacctggaagagccgatatctcattcagccccag
ctccctctagagctgtgtacttctctgagcttgtggctcaggctctgcag
ggcttcaggaaactcacagcaggctctagccagctcctgtgactgtgagt
cctcaccgcgctaaccagcttcctc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr17_87543051_87544119
seq2: B6Ng01-049E18.b_44_1092

seq1  GAATTCTGTGGCACATGGAGATAGAATAATTCAGTATCCGCTCGTACGTC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTGTGGCACATGGAGATAGAATAATTCAGTATCCGCTCGTACGTC  50

seq1  AGAGCAGTTTATTCATAGCAATTTGTGGTGCTGGGAATCAAAGCCAGACC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGCAGTTTATTCATAGCAATTTGTGGTGCTGGGAATCAAAGCCAGACC  100

seq1  GTGTGCGTATGAAGCAAGGGTTCTACTGGGGAGCTACCTCCTACTCCTTA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTGCGTATGAAGCAAGGGTTCTACTGGGGAGCTACCTCCTACTCCTTA  150

seq1  CTGATTGTGGTGGGAAAGAACAATTTTCTTCCAAGCATGTTAACAGTGTT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGATTGTGGTGGGAAAGAACAATTTTCTTCCAAGCATGTTAACAGTGTT  200

seq1  CCATACTTGTGGATTATTGTCAGCCTGAGTGGGCTGTGCCCCGGCTTGGC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCATACTTGTGGATTATTGTCAGCCTGAGTGGGCTGTGCCCCGGCTTGGC  250

seq1  TGCTGTTCATCGGTGGGTTTCTCATTCCCGACAGGGCCTGATTTCTCACC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTGTTCATCGGTGGGTTTCTCATTCCCGACAGGGCCTGATTTCTCACC  300

seq1  TGCTTAACACGGAGGTGTGGAAATATGAAACCAAATAATCTTGGAGATGT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTTAACACGGAGGTGTGGAAATATGAAACCAAATAATCTTGGAGATGT  350

seq1  GCATAGCACAGTGCCTGGCATGGGTGGCTGTTCTCAGTGTCCTTGTACCC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCATAGCACAGTGCCTGGCATGGGTGGCTGTTCTCAGTGTCCTTGTACCC  400

seq1  ATCTACACACAGGAATCCAGAGCGCCTAAGTGCAAGGCCAGTCTTCCTTT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTACACACAGGAATCCAGAGCGCCTAAGTGCAAGGCCAGTCTTCCTTT  450

seq1  CTCTACGAAAGGCTCCACTAAAAGATAAATTGAACCCGTAGTTCTAATTG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTACGAAAGGCTCCACTAAAAGATAAATTGAACCCGTAGTTCTAATTG  500

seq1  AAAGACTGTTTGTTCAATATGGGGTTTTATAAAAGGACATAGTCAGAATG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGACTGTTTGTTCAATATGGGGTTTTATAAAAGGACATAGTCAGAATG  550

seq1  TTGATACATTACCTCTGAGCTTTGTGGAAAAAAAATTTCATAAAAG-TTC  599
      |||||||||||||||||||||||||||||||||||||||||||||| |||
seq2  TTGATACATTACCTCTGAGCTTTGTGGAAAAAAAATTTCATAAAAGTTTC  600

seq1  TTGCTTAGAAAATTACTA-GGACACGGGTAGAATAAAGCACGCTGTAATT  648
      |||||||||||||||||| |||||||||||||||||||||||||||||||
seq2  TTGCTTAGAAAATTACTAGGGACACGGGTAGAATAAAGCACGCTGTAATT  650

seq1  CTATTGATTTTAATGCTCATAAAATGTTTTAGTTTTCCATCAGGTAAAAG  698
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTATTGATTTTAATGCTCATAAAATGTTTTAGTTTTCCATCAGGTAAAAG  700

seq1  AATTTGTC-TTGGGAATCAATAGAGGCAGGGTTGTAGATTCAAGCTTTGA  747
      |||||||| |||||||||||||||||||||||||||||||||||||||||
seq2  AATTTGTCTTTGGGAATCAATAGAGGCAGGGTTGTAGATTCAAGCTTTGA  750

seq1  CATCCTGGTAGAGATGTGGCGATGCCTGTGGTCCCATAGTCTTCTCTGAG  797
      ||||||||||||||||||||||||||||||||||||||||||||||||| 
seq2  CATCCTGGTAGAGATGTGGCGATGCCTGTGGTCCCATAGTCTTCTCTGA-  799

seq1  GTCAGCTGCTGTTGACCTGTGTTCAGGCCTTCACCATAAGAGGGTACAAG  847
      ||||||||||||||||||||||||||||||||| ||||||||||||||||
seq2  GTCAGCTGCTGTTGACCTGTGTTCAGGCCTTCA-CATAAGAGGGTACAAG  848

seq1  CACATCAGTGGGGGTCGACACCGCTTTCATCTCCAGCCACAGTCAACAAG  897
      |||||||||||||||||||||||| ||||||||||| |||||||||||||
seq2  CACATCAGTGGGGGTCGACACCGC-TTCATCTCCAG-CACAGTCAACAAG  896

seq1  AAAGAAACTCCAAGCCACCCCACTCAACATCCTTAGAGGCAAAACTTAAT  947
      ||||||||| ||||||||||||||| ||||||||||||    ||||||||
seq2  AAAGAAACT-CAAGCCACCCCACTC-ACATCCTTAGAG---CAACTTAAT  941

seq1  CCCACCATAAATCACTGGATGGCTCTTCCAACTCAAGACGGCTGATGCTG  997
      ||   ||| |||||||||||||||| || ||||| |||| ||||||||| 
seq2  CC--ACAT-AATCACTGGATGGCTC-TCTAACTC-AGAC-GCTGATGCT-  984

seq1  GGCTGGGGATAGGAGCGGATTGGTAGAGTGCTTACCCAGCATGCATTTGA  1047
      ||||||||||| |||| |||| ||| |||||| |||||||||||||||||
seq2  GGCTGGGGATA-GAGC-GATT-GTA-AGTGCTAACCCAGCATGCATTTGA  1030

seq1  TTCCTACCCTTGCATAAGCTGG  1069
      |  |||||||||||| ||||||
seq2  T--CTACCCTTGCAT-AGCTGG  1049

seq1: chr17_87687697_87688676
seq2: B6Ng01-049E18.g_68_1042 (reverse)

seq1  GAGG-AGCTGGGTTAGCGCGGTGAGGGACTCACAGTTCACAGGAGCTGGC  49
      |||| |||| |||||||||||||| |||||||||| ||||||||||||||
seq2  GAGGAAGCT-GGTTAGCGCGGTGA-GGACTCACAG-TCACAGGAGCTGGC  47

seq1  TTAGAGCCCTGCTGTGAGTTTCCCTGAAGCCCTGCAGAGCCCTGAGCCAC  99
       ||||| |||||||||||||| ||||||||||||||||| ||||||||||
seq2  -TAGAG-CCTGCTGTGAGTTT-CCTGAAGCCCTGCAGAG-CCTGAGCCAC  93

seq1  AAGCTCAGAGAGGTACACAGCTCTAGAGGGAGCTGGGGCTG-ATGAGATA  148
      ||||||||||| ||||||||||||||||||||||||||||| ||||||||
seq2  AAGCTCAGAGAAGTACACAGCTCTAGAGGGAGCTGGGGCTGAATGAGATA  143

seq1  TCGGCTCTTCCAGGTTCTTCCAGGGCTGGG-ATTTGGAACCGAGGGTCGA  197
      |||||||||||||| ||||||||||||||| ||||||||||||| |||||
seq2  TCGGCTCTTCCAGG-TCTTCCAGGGCTGGGAATTTGGAACCGAGAGTCGA  192

seq1  CCTCTGCGACTGCCAGCACTGTTGTGCGCTCTTCTTTTTTCCATCTTTCT  247
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTCTGCGACTGCCAGCACTGTTGTGCGCTCTTCTTTTTTCCATCTTTCT  242

seq1  TTTATGAGGCAGTGTCTCACAAAGTAGCTGTAGCTGGCCCGGAACTCGAT  297
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTATGAGGCAGTGTCTCACAAAGTAGCTGTAGCTGGCCCGGAACTCGAT  292

seq1  ATTTAGACTAGGCTAGCCTGGGACTTGCAGAGATCTGATGCTGCTATTGG  347
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTAGACTAGGCTAGCCTGGGACTTGCAGAGATCTGATGCTGCTATTGG  342

seq1  GAATAAAGGGGTGTCACTACCATGACCTCCCCACTCTACTTGCTTGCTTC  397
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATAAAGGGGTGTCACTACCATGACCTCCCCACTCTACTTGCTTGCTTC  392

seq1  CTTTCTTCTTTTGACAGGGCCTCACCATGATCTCACTATGTAGACCAGGG  447
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTCTTCTTTTGACAGGGCCTCACCATGATCTCACTATGTAGACCAGGG  442

seq1  TGGCATCGGACTCGGAGATCTGCCTGCCTCTTCCTCACTGTTACCAGTTT  497
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGCATCGGACTCGGAGATCTGCCTGCCTCTTCCTCACTGTTACCAGTTT  492

seq1  AGCTTGAAGTTCCTCCCACCGTTGCATATACAGAACACCCTCAGCCCATG  547
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCTTGAAGTTCCTCCCACCGTTGCATATACAGAACACCCTCAGCCCATG  542

seq1  TTGTGGCTGCAGGATGCCCCTTTTTATGGACGTATGGAATTTTAATTAGC  597
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTGGCTGCAGGATGCCCCTTTTTATGGACGTATGGAATTTTAATTAGC  592

seq1  CACCCATTGACGGGCGTAAAGCCTCTCAGGGTTTTTTGGTTTTGTTTTGT  647
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACCCATTGACGGGCGTAAAGCCTCTCAGGGTTTTTTGGTTTTGTTTTGT  642

seq1  TTTATTTTGTTAGTCTACCTGCTGCTGGGTGAGGAATTGCAAGTAGGTTG  697
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTATTTTGTTAGTCTACCTGCTGCTGGGTGAGGAATTGCAAGTAGGTTG  692

seq1  TTTTACACATATGCAAAGGCATCTATCTGTAGGGTGTTGCCAAGCAATCC  747
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTACACATATGCAAAGGCATCTATCTGTAGGGTGTTGCCAAGCAATCC  742

seq1  CTTCTAGAAGTTGCTTCAGCTCCGAGTTTCGTCAGCACTCAATGGTAGTT  797
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCTAGAAGTTGCTTCAGCTCCGAGTTTCGTCAGCACTCAATGGTAGTT  792

seq1  GGAAAGGTGTGCTTTTAAAGGCAAATTCTCAGGATGTTAATTTTAAAAAT  847
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAAAGGTGTGCTTTTAAAGGCAAATTCTCAGGATGTTAATTTTAAAAAT  842

seq1  CCTGAGGTTGACAGCACTGGATCTGATGACGACGCTTCCTTGGGACAAAC  897
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGAGGTTGACAGCACTGGATCTGATGACGACGCTTCCTTGGGACAAAC  892

seq1  CCTCGTGGGACTGACTGTGTGGCTGCGATTCAGGTTTAGGGCCGCTTGGT  947
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTCGTGGGACTGACTGTGTGGCTGCGATTCAGGTTTAGGGCCGCTTGGT  942

seq1  GTTGTTAGGAAGGGAGATTCCTCGAAGGAATTC  980
      |||||||||||||||||||||||||||||||||
seq2  GTTGTTAGGAAGGGAGATTCCTCGAAGGAATTC  975