BAC Information

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BAC

Clone NameB6Ng01-049N12
Chromosome17 (Build37)
Map Location 59,039,843 - 59,040,958
singlet/doubletsinglet
Overlap gene2610034M16Rik
Upstream geneCntnap5c, LOC620408, EG545216, LOC668648
Downstream geneNudt12, 4930505H01Rik, LOC100043537, LOC100043542
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-049N12.bB6Ng01-049N12.g
ACCDH873983DH873984
length1,1031,090
definitionDH873983|Mus musculus domesticus DNA, BAC clone: B6Ng01-049N12, 5' end.DH873984|Mus musculus domesticus DNA, BAC clone: B6Ng01-049N12, 3' end.
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
gaattcccagataaaaaaatatgcactgttgctaagaaagcactatgtgc
taaataagctacgagaataactttatttcatcattgcattttactttttt
aaaaaaagtaaactatagaaaaataacacagcaagagcttattatacaca
aaatgggaactcaagaagcaattaaatttgaacaagcaccatttaacaac
attcttatctcatttacaaatgggaactgggaagctcagaaagggggtag
cacccagctcacatgggtgcctcttggctgagcccagactctttctagat
gcaaaactgaactgtcctgataccctatccaattgacatttctggagtta
agctgaggctctgtttctaagtcaatggataatactattgtaatctcatt
gtgcaaatataacttaattatggctttatgacaactggtccctccttcgg
gctcttagagacttgactttgttctagactgagagatacaaaaaggcaga
atgctgcctttcaaataaagttcctttgtactgtatttccttgggaaccc
atgtatttgagtttgtggtatcttcttagacagacacttaaaatgcaggc
tttaaggacataagtggaaaaactctgttgtactttaagtgcatagctgc
ctcttccctttgatttttaaaaaataaataatgaaaaactgtatgacatc
tctttctaaatgtttcaggaatccattttcattcatagaaccgagtcaaa
ctctgcaatctggcatttataatttgaacctcaccttcaaaccttcccta
actgtgccactcttctgatttctctccagtagctcactgcttgaactgca
acccagcacacaaagaccctggcccatttctttctgcctctcaactctca
gttcctacagttgctagactcagctgtacacgagagattcagtttcttca
gctgtattatttctacccaatattctatgtgtctctgtactgagaaatgc
ttacacatggacgttgtctggtaatgttgataaacggactgaaaggacag
agcctgaatgccttggagtaaacatgttgtcttaagatgttctacgaaag
aaa
gaattcactgtttagctctataccctattattttttaattgcaatagttg
gggtgttggagattagcttcttgaattccttgtatgttttgaatattagt
actctgtcagatgtagtttcagtgaagacttctttcccaatctttaggct
gccgatttgacatattgactgtgtctttcaccttacagaagcttgtcagt
ttcatgtggtcccatttgtcaatagttgatcttagagtccaagctattgg
tgttttcttcagaaaaaattcccctatgacaatgagtttgagactctttc
ccaccttttcttttattagatttagtgtatctggttttatgttgaggttc
ttgatccacttagagttgagctttgtgcatgttgataaatatggatctaa
cttcattttcattcttctacaagcagactgccagttagatgagcaccatt
tattgaagatactcttcatttctgattttgttaatttggatgctgtcttg
tgccctctagttagtttggctaatgttcatctatcttgctgattttctca
aagaaccagctcttcatttgttgattttttttgtatgattctctttgttt
ctaactggttgatttcagccctgattttgactagtttctgccatctactc
ctcttgggtatatttgcttctttctgttctagagctttcaggtgtgcttt
aagtagtttgtatgggatctctacaatttctttatgaaggcacttagtgc
tgacttttttttaacactgctttcattgtgttctataagttttggtatat
gtgtcctccattttcattgaatttcatgaagtctttggcttctttcttta
tttcttccctgaccaagttatcactgagcaaagagtgttctgtttccatg
agtatatgagattctgttcgtttgtgatattgaaatctatccattgtcat
ggtgatctgatagaaaccatgggatattccaatgttcctgtatttgtgag
cttgtttatgaatggtcaaatgcctaatttgaggaaggtttgggtggggc
ctaaaaaaggattatcctcctgtttggggggggtgaaatg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr17_59039843_59040958
seq2: B6Ng01-049N12.b_44_1146 (reverse)

seq1  TTTCTTTCGTAGAAACCATCCTAAGAC-ACATGTGTAACTCAAAGGCATT  49
      ||||||||||||||  |||| |||||| |||||| | |||| ||||||||
seq2  TTTCTTTCGTAGAA--CATCTTAAGACAACATGT-TTACTCCAAGGCATT  47

seq1  CAAGGCTCTGTCCTTTCAGTCCCTTTATCAAACATTTACCAGACAACGTC  99
      | |||||||||||||||||||| |||||| |||| |||||||||||||||
seq2  C-AGGCTCTGTCCTTTCAGTCCGTTTATC-AACA-TTACCAGACAACGTC  94

seq1  CATGTGTAAGCATTTTCTCCAGTACAGAGACACATAGAATATTGGGGTAG  149
      |||||||||||| ||||| |||||||||||||||||||||||| ||||||
seq2  CATGTGTAAGCA-TTTCT-CAGTACAGAGACACATAGAATATT-GGGTAG  141

seq1  AAATAAATACAGCCTGAAGAAACTGAATTCTCTCGTGTACAGCCTGAGTC  199
      |||| ||||||| |||||||||||||| |||||||||||||| |||||||
seq2  AAAT-AATACAG-CTGAAGAAACTGAA-TCTCTCGTGTACAG-CTGAGTC  187

seq1  TTAGCAACTGTAGGAACTGAGAGTTGAGAGGCAGAAAGAAATGGGCCAGG  249
       |||||||||||||||||||||||||||||||||||||||||||||||||
seq2  -TAGCAACTGTAGGAACTGAGAGTTGAGAGGCAGAAAGAAATGGGCCAGG  236

seq1  GTCTTTGTGTGCTGGGTTGCAGTTCAAGCAGTGAGCTACTGGAGAGAAAT  299
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCTTTGTGTGCTGGGTTGCAGTTCAAGCAGTGAGCTACTGGAGAGAAAT  286

seq1  CAGAAGAGTGGCACAGTTAGGGAAGGTTTGAAGGTGAGGTTCAAATTATA  349
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGAAGAGTGGCACAGTTAGGGAAGGTTTGAAGGTGAGGTTCAAATTATA  336

seq1  AATGCCAGATTGCAGAGTTTGACTCGGTTCTATGAATGAAAATGGATTCC  399
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGCCAGATTGCAGAGTTTGACTCGGTTCTATGAATGAAAATGGATTCC  386

seq1  TGAAACATTTAGAAAGAGATGTCATACAGTTTTTCATTATTTATTTTTTA  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAAACATTTAGAAAGAGATGTCATACAGTTTTTCATTATTTATTTTTTA  436

seq1  AAAATCAAAGGGAAGAGGCAGCTATGCACTTAAAGTACAACAGAGTTTTT  499
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAATCAAAGGGAAGAGGCAGCTATGCACTTAAAGTACAACAGAGTTTTT  486

seq1  CCACTTATGTCCTTAAAGCCTGCATTTTAAGTGTCTGTCTAAGAAGATAC  549
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCACTTATGTCCTTAAAGCCTGCATTTTAAGTGTCTGTCTAAGAAGATAC  536

seq1  CACAAACTCAAATACATGGGTTCCCAAGGAAATACAGTACAAAGGAACTT  599
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACAAACTCAAATACATGGGTTCCCAAGGAAATACAGTACAAAGGAACTT  586

seq1  TATTTGAAAGGCAGCATTCTGCCTTTTTGTATCTCTCAGTCTAGAACAAA  649
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTTGAAAGGCAGCATTCTGCCTTTTTGTATCTCTCAGTCTAGAACAAA  636

seq1  GTCAAGTCTCTAAGAGCCCGAAGGAGGGACCAGTTGTCATAAAGCCATAA  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCAAGTCTCTAAGAGCCCGAAGGAGGGACCAGTTGTCATAAAGCCATAA  686

seq1  TTAAGTTATATTTGCACAATGAGATTACAATAGTATTATCCATTGACTTA  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAAGTTATATTTGCACAATGAGATTACAATAGTATTATCCATTGACTTA  736

seq1  GAAACAGAGCCTCAGCTTAACTCCAGAAATGTCAATTGGATAGGGTATCA  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAACAGAGCCTCAGCTTAACTCCAGAAATGTCAATTGGATAGGGTATCA  786

seq1  GGACAGTTCAGTTTTGCATCTAGAAAGAGTCTGGGCTCAGCCAAGAGGCA  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGACAGTTCAGTTTTGCATCTAGAAAGAGTCTGGGCTCAGCCAAGAGGCA  836

seq1  CCCATGTGAGCTGGGTGCTACCCCCTTTCTGAGCTTCCCAGTTCCCATTT  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCATGTGAGCTGGGTGCTACCCCCTTTCTGAGCTTCCCAGTTCCCATTT  886

seq1  GTAAATGAGATAAGAATGTTGTTAAATGGTGCTTGTTCAAATTTAATTGC  949
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAAATGAGATAAGAATGTTGTTAAATGGTGCTTGTTCAAATTTAATTGC  936

seq1  TTCTTGAGTTCCCATTTTGTGTATAATAAGCTCTTGCTGTGTTATTTTTC  999
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTTGAGTTCCCATTTTGTGTATAATAAGCTCTTGCTGTGTTATTTTTC  986

seq1  TATAGTTTACTTTTTTTAAAAAAGTAAAATGCAATGATGAAATAAAGTTA  1049
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATAGTTTACTTTTTTTAAAAAAGTAAAATGCAATGATGAAATAAAGTTA  1036

seq1  TTCTCGTAGCTTATTTAGCACATAGTGCTTTCTTAGCAACAGTGCATATT  1099
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTCGTAGCTTATTTAGCACATAGTGCTTTCTTAGCAACAGTGCATATT  1086

seq1  TTTTTATCTGGGAATTC  1116
      |||||||||||||||||
seq2  TTTTTATCTGGGAATTC  1103