BAC Information

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BAC

Clone NameB6Ng01-050L21
Chromosome2 (Build37)17 (Build37)
Map Location 118,380,499 - 118,381,17590,174,593 - 90,175,463
singlet/doubletsingletsinglet
Overlap genenone
Upstream geneThbs1, Fsip1, Gpr176, 1700054M17Rik, Eif2ak4, Srp14, LOC668859, Bmf
Downstream geneLOC640461, Bub1b, Pak6, Gm1337, Plcb2, LOC100043272, A430105I19Rik, Disp2, D2Ertd750e, Ivd, Bahd1, Chst14, LOC677379, Ccdc32, Rpusd2, Casc5, Rad51, 1200015F23Rik, Gchfr, Dnajc17, OTTMUSG00000015762, LOC545640, Zfyve19, Ppp1r14d, Spint1, Rhov, Vps18, LOC100043609, Dll4, Chac1, Inoc1, LOC100043612, Exdl1, 1500003O03Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-050L21.bB6Ng01-050L21.g
ACCDH874596DH874597
length971873
definitionDH874596|Mus musculus domesticus DNA, BAC clone: B6Ng01-050L21, 5' end.DH874597|Mus musculus domesticus DNA, BAC clone: B6Ng01-050L21, 3' end.
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(118,380,499 - 118,381,175)(90,174,593 - 90,175,463)
sequence
gaattcatacagttgaatccttcttaacagtctgctttacgggaaccttt
atcaccgtcgttccccagctgatgagttctgaattcggcagttgaatcct
tctcaacagtctgtgttacgggaaccttataaccttgattcgcagttctg
gttctggaatgaagtatccctcctgcgccagtccggagttttttctcgtc
ccggattttctcgtcccggaattcggcaccaattgttattagacgcgttc
tcacgaccggccaggaagaacaccacagaccagaatcttctgcggcaaag
ctttattcttacatcttcaggaaaagagagcaagaagcaagagagcgaag
caagagagcgaagcaagagagagagaaaaacgaaaaccccgtccctctta
aggagcattctccttcgcctcggacgtgtcactccttgattggctgcagc
ccatcggccgagttgacgtcatggggaaggcagagcacaagtagtcataa
gatacccttggcacatgcgcagattatttgtttaccacttagaacacagg
atgtcagcgccatcttgtaacggcgaatgtgggggcggctcccaacaatt
ttctggtaaaacatcaaccacatgttttgcaacagtgaatttccaacttt
agtgtgcataaagatctcttcaaagtcttctcaaaatacagattataatt
cagagactcagagttgaagcctagaacaacacattccctacaagcttcaa
gagtacctatgctgtaagtatgtgtgctacagtttgaatactgtagctac
tcagagagatactgtaagcagggtggattaaactgtttccaaagcctgcc
aactttttctttggaagattttacaaaacttggcaaacagataataaaat
agacatagaaattgtcttttcagatatacatcataacagtatattttatg
tagcatgtcactacaaaagca
gaattcattaaaatttaacatgcatcagaaatcttcatttttaaaagtga
gaatatagcctacccaatatgaaaattagaaaactcaactactcccagtg
tgaacttaaaatggttcatcctctgtagaagacaattgttcaaaaatatt
caacaaagcctaatgtcacacacctagaccctcctggccctgtatctgtg
taactgagagcggatacatgcagcagcgtctcagtacactgccactcacc
actgcaaacaggaaagcacccactaattcatgtctactggtgcataaagg
aatgattgcaatgatgaccagatattttggaggattattcagaataaagg
aacaaacttctgtcataatgtgcaacgtgaatggccctccaaaatacaaa
agatgctaaacataaaagatcacataatgatttgcataaaatatccagaa
tacttaaattcatacaggtataaatctgatttttggctaccccatgctag
agggaaagggaagtggagatcatttgttttggagagggattactgtgggt
ataataacaacagtttgaaattatgaacaagtgctcattaaacagcaatg
tgaatttgctaaatggcattgacctgtcttttaaagatgatcagtttaga
taaggtggactaaaaataacacacaggatccctggagaagaaggcaccag
gcataattacagcatgctgtaccgctgggaggaaaaaagaaagaagaagg
aaagggaaggaaggaaggaaggaaagaaagaaggaaggaaagaaaggaaa
gaagaaggaagaaggaaggaaaagaaaaggaaaaggaaaagaaatgaaag
aaaggaaatgaaagaaaaggaaa
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr2_118380499_118381175
seq2: B6Ng01-050L21.b_46_645 (reverse)

seq1  AATTGTTGGGAGCCGCCCCCACATTCGCCGTCACAAGATGGCGTTGACAT  50
      ||||||||||||||||||||||||||||||| ||||||||||| ||||||
seq2  AATTGTTGGGAGCCGCCCCCACATTCGCCGTTACAAGATGGCGCTGACAT  50

seq1  CCTGTGTTCTAAGTGGTAAACAAATAATCTGCGCATGTGCCAAGGGTAT-  99
      ||||||||||||||||||||||||||||||||||||||||||||||||| 
seq2  CCTGTGTTCTAAGTGGTAAACAAATAATCTGCGCATGTGCCAAGGGTATC  100

seq1  TTACGACTACTTGTACTCTGCTTTTCCCATGAACGTCAGCTCGGCC-ATG  148
      ||| |||||||||| |||||| || |||||| |||||| ||||||| |||
seq2  TTATGACTACTTGTGCTCTGCCTTCCCCATG-ACGTCAACTCGGCCGATG  149

seq1  GGCTGCAGCCAATCAGGGAGTGATGCGTCCTAAGTGAAGGGTCACTCCTC  198
      ||||||||||||||| |||||||  ||||| | | ||| ||  | | |||
seq2  GGCTGCAGCCAATCAAGGAGTGACACGTCCGAGGCGAA-GGAGAATGCTC  198

seq1  CTTAAAGGGGACGGGGTTTTCCGCCACTCTCTCTCGCTGGCATCTCTCTG  248
      |||||  ||||||||||||||      | | ||||       ||||||| 
seq2  CTTAAGAGGGACGGGGTTTTC-----GTTTTTCTC-------TCTCTCTT  236

seq1  GCTCTGCGCGCCCGGCGCTCGCTCGCTGCCTAAAGATGTAAACAATAGAG  298
      |||               |||||| ||         ||            
seq2  GCT---------------TCGCTCTCT---------TG------------  250

seq1  CACGCTCTGCGCTTTGGCGCGCCGGAGCTCTGGCTCCTAAAAATATTGAG  348
            || ||||              |||| |||               
seq2  ------CTTCGCT--------------CTCTTGCT---------------  265

seq1  GGGCTTTCGTTTCTGGGGCTGGGCGCTGGGCACTTGCTCTCCTGGCTCCC  398
                                      ||||||||| |   ||| 
seq2  -------------------------------TCTTGCTCTCTT--TTCCT  282

seq1  AAAGATGTTAGCAATAAAGTTTTGCCGCAGAAGATTTTGGTCTGTGGTGT  448
       ||||||| || ||||||| |||||||||||||||| |||||||||||||
seq2  GAAGATGTAAG-AATAAAGCTTTGCCGCAGAAGATTCTGGTCTGTGGTGT  331

seq1  TCTTCCTGGCCGGTCGTGAGAACGCGTCTAATAACAATTGGTGCCGAATT  498
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTCCTGGCCGGTCGTGAGAACGCGTCTAATAACAATTGGTGCCGAATT  381

seq1  CCGGGACGAGAAATTCCGGGACGAGAAAAAA-TCCG----------GGAA  537
      ||||||||||||| ||||||||||||||||| ||||          ||| 
seq2  CCGGGACGAGAAAATCCGGGACGAGAAAAAACTCCGGACTGGCGCAGGAG  431

seq1  GAA-----------AAAACCTGGGAGGAAACTC-GGGACGGGAGTTTCAC  575
      | |           | |||| |    |  | ||  ||     || ||| |
seq2  GGATACTTCATTCCAGAACCAGAACTGCGAATCAAGGTTATAAGGTTC-C  480

seq1  CG--GCGCAG--------GGAAGATCC-----CTCATTCCAGAAC-CA-G  608
      ||   | |||        | | ||| |     |  | | |||||| ||  
seq2  CGTAACACAGACTGTTGAGAAGGATTCAACTGCCGAATTCAGAACTCATC  530

seq1  AACTGCGGGTCG-CGGTAATAAAGGTTCCCGTAAAGCAGACTGTTAAGAA  657
      | ||| ||  || |||| ||||||||||||||||||||||||||||||||
seq2  AGCTGGGGAACGACGGTGATAAAGGTTCCCGTAAAGCAGACTGTTAAGAA  580

seq1  GGATTCAACTGCATGAATTC  677
      ||||||||||| ||||||||
seq2  GGATTCAACTGTATGAATTC  600

seq1: chr17_90174593_90175463
seq2: B6Ng01-050L21.g_68_940

seq1  GAATTCATTAAAATTTAACATGCATCAGAAATCTTCATTTTTAAAAGTGA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCATTAAAATTTAACATGCATCAGAAATCTTCATTTTTAAAAGTGA  50

seq1  GAATATAGCCTACCCAATATGAAAATTAGAAAACTCAACTACTCCCAGTG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATATAGCCTACCCAATATGAAAATTAGAAAACTCAACTACTCCCAGTG  100

seq1  TGAACTTAAAATGGTTCATCCTCTGTAGAAGACAATTGTTCAAAAATATT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAACTTAAAATGGTTCATCCTCTGTAGAAGACAATTGTTCAAAAATATT  150

seq1  CAACAAAGCCTAATGTCACACACCTAGACCCTCCTGGCCCTGTATCTGTG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAACAAAGCCTAATGTCACACACCTAGACCCTCCTGGCCCTGTATCTGTG  200

seq1  TAACTGAGAGCGGATACATGCAGCAGCGTCTCAGTACACTGCCACTCACC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAACTGAGAGCGGATACATGCAGCAGCGTCTCAGTACACTGCCACTCACC  250

seq1  ACTGCAAACAGGAAAGCACCCACTAATTCATGTCTACTGGTGCATAAAGG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTGCAAACAGGAAAGCACCCACTAATTCATGTCTACTGGTGCATAAAGG  300

seq1  AATGATTGCAATGATGACCAGATATTTTGGAGGATTATTCAGAATAAAGG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGATTGCAATGATGACCAGATATTTTGGAGGATTATTCAGAATAAAGG  350

seq1  AACAAACTTCTGTCATAATGTGCAACGTGAATGGCCCTCCAAAATACAAA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACAAACTTCTGTCATAATGTGCAACGTGAATGGCCCTCCAAAATACAAA  400

seq1  AGATGCTAAACATAAAAGATCACATAATGATTTGCATAAAATATCCAGAA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATGCTAAACATAAAAGATCACATAATGATTTGCATAAAATATCCAGAA  450

seq1  TACTTAAATTCATACAGGTATAAATCTGATTTTTGGCTACCCCATGCTAG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACTTAAATTCATACAGGTATAAATCTGATTTTTGGCTACCCCATGCTAG  500

seq1  AGGGAAAGGGAAGTGGAGATCATTTGTTTTGGAGAGGGATTACTGTGGGT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGGAAAGGGAAGTGGAGATCATTTGTTTTGGAGAGGGATTACTGTGGGT  550

seq1  ATAATAACAACAGTTTGAAATTATGAACAAGTGCTCATTAAACAGCAATG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAATAACAACAGTTTGAAATTATGAACAAGTGCTCATTAAACAGCAATG  600

seq1  TGAATTTGCTAAATGGCATTGACCTGTCTTTTAAAGATGATCAGTTTAGA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAATTTGCTAAATGGCATTGACCTGTCTTTTAAAGATGATCAGTTTAGA  650

seq1  TAAGGTGGACTAAAAATAACACACAGGATCCCTGGAGAAGAAGGCACCAG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAGGTGGACTAAAAATAACACACAGGATCCCTGGAGAAGAAGGCACCAG  700

seq1  GCATAATTACAGCATGCTGTACCGCTGGGAGGAAAAAA-AGAAAAGAAAG  749
      |||||||||||||||||||||||||||||||||||||| | | ||||| |
seq2  GCATAATTACAGCATGCTGTACCGCTGGGAGGAAAAAAGAAAGAAGAAGG  750

seq1  AAAGGAAAAGGGAAGGAAAGGAAAGGAAAGGAA-AGGAAAGGAAAGGAAA  798
      ||||| ||  ||||||||  | |||||||| || | | ||||||| ||||
seq2  AAAGGGAA--GGAAGGAA--GGAAGGAAAGAAAGAAGGAAGGAAA-GAAA  795

seq1  GGAAAGGA-AAGGA--AAGGAAAGGAAAGGAAAGG-AAAGGAAAGGAAAA  844
      |||||| | |||||  |||||| | |||| ||||| |||||||| |||| 
seq2  GGAAAGAAGAAGGAAGAAGGAAGGAAAAGAAAAGGAAAAGGAAAAGAAAT  845

seq1  AGGAAAAAGGAAA--AAGGAAAAAGGAAA  871
         | ||||||||  || | |||||||||
seq2  GAAAGAAAGGAAATGAAAG-AAAAGGAAA  873