BAC Information

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BAC

Clone NameB6Ng01-050N08
Chromosome17 (Build37)
Map Location 65,335,887 - 65,336,606
singlet/doubletsinglet
Overlap genenone
Upstream geneFert2, LOC669778, Pja2, LOC100043582, Man2a1, 4930583I09Rik, LOC100043871
Downstream geneE130009J12Rik, LOC668655, LOC674701, Vapa, Txndc2, Rab31, Ppp4r1, Ralbp1, LOC100043873, LOC100043592, Twsg1, Ankrd12
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-050N08.bB6Ng01-050N08.g
ACCDH874661DH874662
length1,208812
definitionDH874661|Mus musculus domesticus DNA, BAC clone: B6Ng01-050N08, 5' end.DH874662|Mus musculus domesticus DNA, BAC clone: B6Ng01-050N08, 3' end.
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
gaattcttcccccacctgatagtcaatcaactgatgtgccaaaaaacggg
tcatcgggccctcggtcccagggccctcaaagatatgggaaccggtttgt
caggacccaggaagcagtcagagaggcgacccaggaagacccacaagggt
ggacctgcgtgccgcctccgacttcctactaatgcctcaaatgagtattc
agccggtgccggtggagcctataccatccttgcccccgggaaccatgggc
cttattctcggccgaggttcactcaccttgcagggcttagtagtccaccc
tggagttatggattgtcaacattcccctgaaatacaggtcctgtgctcaa
gccctaaaggcgttttttctattagtaaaggagataggatagctcagctg
ctgctcctccctgataataccagggagaaatctgcaggacctgagataaa
gaaaatgggctcctcaggaaatgattctgcctatttggttgtatctttaa
atgatagacctaagctccgccttaagattaatggaaaagagtttgaaggc
atccttgataccggagcagataaaagtataatctctacacattggtggcc
caaagcatggcccaccacagagtcatctcattcattacagggcctaggat
atcaatcatgtcccactataagctccgttgccttgacgtgggaatcctct
gaagggcagcaagggaaattcataccttatgtgctcccactcccggttaa
cctctggggaagggatattatgcagcatttgggccttattttgtccaatg
aaaacgccccatcgggagggtattcagctaaagcaaaaatatcatggtaa
agatgggtataaagagaaaaggttagacatcagacaggagatagagccca
tctcactaatgaaacagacagacaggtctggtttcttagcgcatgggcag
cacgaccatacatgaaacagggaccatgtggttctcatggcactatctct
gaaactaaagcgtggatcactggtagagaacataaactagccattgacct
ctacctccctggaatctcaattttgtataagaaagtcgaaatggactgtc
ctgacccagccttgacaatgactattgccatcaaggttctgacttcgcca
tacgtcgatattgatgaggtctatcactgtccgcatgccagtgctaacct
accgcgta
gaattccattgcatctggcactgaatgacccatcaggtgcttttgtggtt
tgtggttttctttttctttcttacagcatgcagatcattttgccaatgag
tagaacccttgccttctcgaactcagccgattctttatcttatctctggg
gctgcagcctccctgaacatcacagggacagagctgttcttgccttgact
gtgctcatataaaattgactttatatatgggtacaggggaaaaattcctg
aatagaacagcaatggcttgtgctgtaagatcaagaatcgataaatggga
cctcataaaattgcaaagcttctgcaaagcaaaagacaccgtcaataaga
caaaaaggccaccaacagattggaaaaggatctttacctatcccaaatca
gataggggactaatatccaatatatataaagaactcaagaaggtggactc
cagaaaatcaaataaccccattaaaaaatggggctcagagctgaacaaag
aattctcacctgaggaataccgaatggcagagaagcacctgaaaaaatgt
tcaacatccttaatcatcagggaaatgcaaatcaaaacaacactgagatt
ccacttcactccagtcagaatggctaagatcaaaaactcaagtgacagca
gatgctggcaaggatgtggagaaaggggaacactcctccattgttggtgg
gattgcaagcttgtacaaccactctggaaatcagtctggcgttcctcaga
aaattggacatagtactaccggaggatcccgcaatgctcttcctgggcat
atatccagaaga
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr17_65335887_65336606
seq2: B6Ng01-050N08.g_67_786

seq1  GAATTCCATTGCATCTGGCACTGAATGACCCATCAGGTGCTTTTGTGGTT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCATTGCATCTGGCACTGAATGACCCATCAGGTGCTTTTGTGGTT  50

seq1  TGTGGTTTTCTTTTTCTTTCTTACAGCATGCAGATCATTTTGCCAATGAG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGGTTTTCTTTTTCTTTCTTACAGCATGCAGATCATTTTGCCAATGAG  100

seq1  TAGAACCCTTGCCTTCTCGAACTCAGCCGATTCTTTATCTTATCTCTGGG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGAACCCTTGCCTTCTCGAACTCAGCCGATTCTTTATCTTATCTCTGGG  150

seq1  GCTGCAGCCTCCCTGAACATCACAGGGACAGAGCTGTTCTTGCCTTGACT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTGCAGCCTCCCTGAACATCACAGGGACAGAGCTGTTCTTGCCTTGACT  200

seq1  GTGCTCATATAAAATTGACTTTATATATGGGTACAGGGGAAAAATTCCTG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGCTCATATAAAATTGACTTTATATATGGGTACAGGGGAAAAATTCCTG  250

seq1  AATAGAACAGCAATGGCTTGTGCTGTAAGATCAAGAATCGATAAATGGGA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATAGAACAGCAATGGCTTGTGCTGTAAGATCAAGAATCGATAAATGGGA  300

seq1  CCTCATAAAATTGCAAAGCTTCTGCAAAGCAAAAGACACCGTCAATAAGA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTCATAAAATTGCAAAGCTTCTGCAAAGCAAAAGACACCGTCAATAAGA  350

seq1  CAAAAAGGCCACCAACAGATTGGAAAAGGATCTTTACCTATCCCAAATCA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAAAAGGCCACCAACAGATTGGAAAAGGATCTTTACCTATCCCAAATCA  400

seq1  GATAGGGGACTAATATCCAATATATATAAAGAACTCAAGAAGGTGGACTC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATAGGGGACTAATATCCAATATATATAAAGAACTCAAGAAGGTGGACTC  450

seq1  CAGAAAATCAAATAACCCCATTAAAAAATGGGGCTCAGAGCTGAACAAAG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGAAAATCAAATAACCCCATTAAAAAATGGGGCTCAGAGCTGAACAAAG  500

seq1  AATTCTCACCTGAGGAATACCGAATGGCAGAGAAGCACCTGAAAAAATGT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTCTCACCTGAGGAATACCGAATGGCAGAGAAGCACCTGAAAAAATGT  550

seq1  TCAACATCCTTAATCATCAGGGAAATGCAAATCAAAACAACACTGAGATT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAACATCCTTAATCATCAGGGAAATGCAAATCAAAACAACACTGAGATT  600

seq1  CCACTTCACTCCAGTCAGAATGGCTAAGATCAAAAACTCAGGTGACAGCA  650
      |||||||||||||||||||||||||||||||||||||||| |||||||||
seq2  CCACTTCACTCCAGTCAGAATGGCTAAGATCAAAAACTCAAGTGACAGCA  650

seq1  GATGCTGGCAAGGATGTGGAGAAAGGGGAACACTCCTCCATTGTTGGTGG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATGCTGGCAAGGATGTGGAGAAAGGGGAACACTCCTCCATTGTTGGTGG  700

seq1  GATTGCAAGCTTGTACAACC  720
      ||||||||||||||||||||
seq2  GATTGCAAGCTTGTACAACC  720