BAC Information

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BAC

Clone NameB6Ng01-051E13
Chromosome17 (Build37)
Map Location 90,030,654 - 90,031,795
singlet/doubletsinglet
Overlap genenone
Upstream geneGtf2a1lf, Lhcgr, LOC668867, Fshr, LOC100043904
Downstream geneLOC100043906, Nrxn1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-051E13.bB6Ng01-051E13.g
ACCDH874972DH874973
length1,1401,129
definitionDH874972|Mus musculus domesticus DNA, BAC clone: B6Ng01-051E13, 5' end.DH874973|Mus musculus domesticus DNA, BAC clone: B6Ng01-051E13, 3' end.
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
gaattcaatgcccatacctaaacataataaaaggaatatacagcataaca
acagccaatattaaattaaatggagagatagttgaagcaattccactaaa
atcagggacaagtcaagaatggtcactctccctgtatctattcaatatag
tactcaaagttctagccagagcaatagacaacaaaagggaatcaagggga
cagaaattgggaaagaagaagccaaggtatcactatttgcagatgatatg
ataagtgacactaaaaattctaccagagtacttccttttacagctgggaa
actttctagatttaaccatttctttgtctgatatactgatccatttcttc
tatgttatcttctgtgtctgagattttctcttccatatcttgtattccgt
tggtgatgcttgtgcctgtagttcctgttctctttcctaggttttccatc
ttcagggttgcctccatttctgttttctttattccttctaatatgatttt
aggtctttaccattttattaattttcttcaccttattatgttttctttta
tttttaaagggatttatttataggattcatatatcctctttatagggctc
tatacttttcatgagatgaaatttaaggtcacagtcttgctttacaagtg
ttttaggatatccagggcttactgtcttaggagtgttagggtgtgatgat
gccgtattgcactgacttttgttgattatgttcttgtgcttgtctttttc
catttagatatctctggtgttggcttgtctggtagtcacagggtatcctg
ggtttgagcatgtctcccaggaggcagtcagtgctgtgggatgaggacct
ataattgcaggtggaagtgtggactggaagaagaaggagctcctataggc
tgaagcagagctcatgcctgctgtgcttgctgtgatcccagtagtgtagg
tactgggacttggatgtctcatctaatgtcaagggtatgaacaggcctcc
ttgggaggcaggaggagcttgttgatggggaagagtcaccactgtcagtg
gaagtgttcactgtaagaagttgtatctcaccttgttgaagatctggaga
aggactgtaagctgggaatgaaggggagggtctactgcgg
gaattcttttggccttatatcttcatatataagacagtcaataacgttta
aaggtaatagattgatgggttaaacttttgaaaataatctttaaagcacc
taatattgtactttgcacataagtggaatatagtagatgcttgtttcttt
atttacaaagcatacagtacatcacagagtttaatgtaagctctacaatg
ggattttcaatcattgatagtgctcacatgtacaagctgagacttcttga
gtctgatcctgagtttatgaccaaagataggtacagtactccaaaagaca
cagtgtcatttgcatcttgccagtggaagcttctctgttctgaatgggag
cactcattagcatcctctttcatttccagattgtaatattatctaaattt
aagatttcatatcttaggcaactattactacaagagggagggcaatgggt
tataaagggaagaagtaaagttaaaaacgttcatgagcttaaatgcttgt
agcctagactatggaatattgatcttatgctgttgtcataaatggagctg
tcgtggtattcactgtatcttcgaagcctttggagaggattcgattacag
caggactcaatctgggagacatgatgaggttgtgattatttcaggccatt
gaacacccccccacaagcatcctattatgtttacttcactcattaagatg
tagaaaaagaaagacaatctaataagctgaatcttgtattgtagataagg
aagtattatgtagaatatttaaaaatgtacatttgtgcctgtgttaaata
aacatctgtgatataatgagcattgtgcattctggagcaagtgttagaaa
taaaatgggaagtaaacaggaatgactttcttttcttaaaatcaccaatt
ttgaaatgttgcctgatattaataagaagttatcaccctattaacaactg
gtccaacgtcagactctggtctctcaggtgcttctggaatagatctagcc
agctcagcctcaaatgtgtgacttccttcaccagggctcctctgaggaga
agtccaaagtcatcattttaaatttggcctcaatgaagtacctccacctt
gctgacaaaattcttgaatgatgtttaca
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr17_90030654_90031795
seq2: B6Ng01-051E13.g_65_1193

seq1  GAATTCTTTTGGCCTTATATCTTCATATATAAGACAGTCAATAACGTTTA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTTTTGGCCTTATATCTTCATATATAAGACAGTCAATAACGTTTA  50

seq1  AAGGTAATAGATTGATGGGTTAAACTTTTGAAAATAATCTTTAAAGCACC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGTAATAGATTGATGGGTTAAACTTTTGAAAATAATCTTTAAAGCACC  100

seq1  TAATATTGTACTTTGCACATAAGTGGAATATAGTAGATGCTTGTTTCTTT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATATTGTACTTTGCACATAAGTGGAATATAGTAGATGCTTGTTTCTTT  150

seq1  ATTTACAAAGCATACAGTACATCACAGAGTTTAATGTAAGCTCTACAATG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTACAAAGCATACAGTACATCACAGAGTTTAATGTAAGCTCTACAATG  200

seq1  GGATTTTCAATCATTGATAGTGCTCACATGTACAAGCTGAGACTTCTTGA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGATTTTCAATCATTGATAGTGCTCACATGTACAAGCTGAGACTTCTTGA  250

seq1  GTCTGATCCTGAGTTTATGACCAAAGATAGGTACAGTACTCCAAAAGACA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCTGATCCTGAGTTTATGACCAAAGATAGGTACAGTACTCCAAAAGACA  300

seq1  CAGTGTCATTTGCATCTTGCCAGTGGAAGCTTCTCTGTTCTGAATGGGAG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGTGTCATTTGCATCTTGCCAGTGGAAGCTTCTCTGTTCTGAATGGGAG  350

seq1  CACTCATTAGCATCCTCTTTCATTTCCAGATTGTAATATTATCTAAATTT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACTCATTAGCATCCTCTTTCATTTCCAGATTGTAATATTATCTAAATTT  400

seq1  AAGATTTCATATCTTAGGCAACTATTACTACAAGAGGGAGGGCAATGGGT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGATTTCATATCTTAGGCAACTATTACTACAAGAGGGAGGGCAATGGGT  450

seq1  TATAAAGGGAAGAAGTAAAGTTAAAAACGTTCATGAGCTTAAATGCTTGT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATAAAGGGAAGAAGTAAAGTTAAAAACGTTCATGAGCTTAAATGCTTGT  500

seq1  AGCCTAGACTATGGAATATTGATCTTATGCTGTTGTCATAAATGGAGCTG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCCTAGACTATGGAATATTGATCTTATGCTGTTGTCATAAATGGAGCTG  550

seq1  TCGTGGTATTCACTGTATCTTCGAAGCCTTTGGAGAGGATTCGATTACAG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCGTGGTATTCACTGTATCTTCGAAGCCTTTGGAGAGGATTCGATTACAG  600

seq1  CAGGACTCAATCTGGGAGACATGATGAGGTTGTGATTATTTCAGGCCATT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGACTCAATCTGGGAGACATGATGAGGTTGTGATTATTTCAGGCCATT  650

seq1  GAACACCCCCCCACAAGCATCCTATTATGTTTACTTCACTCATTAAGATG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAACACCCCCCCACAAGCATCCTATTATGTTTACTTCACTCATTAAGATG  700

seq1  TAGAAAAAGAAAGACAATCTAATAAGCTGAATCTTGTATTGTAGATAAGG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGAAAAAGAAAGACAATCTAATAAGCTGAATCTTGTATTGTAGATAAGG  750

seq1  AAGTATTATGTAGAATATTTAAAAATGTACATTTGTGCCTGTGTTAAATA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTATTATGTAGAATATTTAAAAATGTACATTTGTGCCTGTGTTAAATA  800

seq1  AACATCTGTGATATAATGAGCATTGTGCATTCTGGAGCAAGTGTTAGAAA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACATCTGTGATATAATGAGCATTGTGCATTCTGGAGCAAGTGTTAGAAA  850

seq1  TAAAATGGGAAGTAAAACAGGAATGACTTTCTTTTCTTAAAATCACCAAT  900
      ||||||||||||| ||||||||||||||||||||||||||||||||||||
seq2  TAAAATGGGAAGT-AAACAGGAATGACTTTCTTTTCTTAAAATCACCAAT  899

seq1  TTTGAAATGTTGCCTGATATTAATAAGAAGTTTATCACCCTATTAACAAC  950
      |||||||||||||||||||||||||||||| |||||||||||||||||||
seq2  TTTGAAATGTTGCCTGATATTAATAAGAAG-TTATCACCCTATTAACAAC  948

seq1  TGGTCCAACGTTCAGACTCTGGTCTCTCAGGTGCTTCTGG-ATAGATCCT  999
      |||||||||| ||||||||||||||||||||||||||||| |||||| ||
seq2  TGGTCCAACG-TCAGACTCTGGTCTCTCAGGTGCTTCTGGAATAGAT-CT  996

seq1  AGCCAGCTCAG-CTCAAATGTGTGACTTCCTTCACCAGGGCTCCTTCTGA  1048
      ||||||||||| |||||||||||||||||||||||||||||||| |||||
seq2  AGCCAGCTCAGCCTCAAATGTGTGACTTCCTTCACCAGGGCTCC-TCTGA  1045

seq1  GGAGAAAGTCCAAAGTCATCATTTTTAAATTTGGCCTCAAATTAAAGTTA  1098
      |||| |||||||||||||||| ||||||||||||||||||  | ||||  
seq2  GGAG-AAGTCCAAAGTCATCA-TTTTAAATTTGGCCTCAA--TGAAGT--  1089

seq1  AACTCACACTTGCTGACAAAAAATTCTTGAAATGATTGTTTACA  1142
      | |||   |||||||||  |||||||||| ||||| ||||||||
seq2  ACCTCCACCTTGCTGAC--AAAATTCTTG-AATGA-TGTTTACA  1129