BAC Information

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BAC

Clone NameB6Ng01-051L11
Chromosome17 (Build37)
Map Location 87,458,081 - 87,636,156
singlet/doubletdoublet
Overlap geneEG433144, Socs5
Upstream geneSrbd1, LOC545228, Prkce, Epas1, 1700090G07Rik, Atp6v1e2, Rhoq, Pigf, Cript
Downstream geneMcfd2, Ttc7, 1700011E24Rik, Calm2, LOC100043727, Tacstd1, Msh2, Kcnk12, LOC626888, LOC668863, EG626920, Msh6, Fbxo11, EG225058
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-051L11.bB6Ng01-051L11.g
ACCDH875276DH875277
length1,027984
definitionDH875276|Mus musculus domesticus DNA, BAC clone: B6Ng01-051L11, 5' end.DH875277|Mus musculus domesticus DNA, BAC clone: B6Ng01-051L11, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(87,458,081 - 87,459,110)(87,635,173 - 87,636,156)
sequence
gaattctctgccgtgaagtgcaaacccatgtgcctaaggtccggttacaa
ccacttggctgcaaagcgctgagctcagtcagtcagcagcaccttctcta
agccttcttgtcttggggaagcagaaagatcatcgtcctatgtgtggcca
tggtggaacaggacacaaaccttccctgctcctaggaactaaatcccgcc
ttatgggccctgtctttccagaaaacagatagtcacagagcagcgtgtac
taggaagtttcagagaaaggatccataagtattggtgaaccaagaaacca
aaacagaagagaaaagttgtttaaaaaaatatcctttctgatctcatagc
caaatacaaggtaaacccaggcagagatgcactcagacatcctattgtgt
tccctcagaactgtgcttttgtggaatgatattggacacatcttgaaaga
tgcatagtggagatttacagttttatccattgaattactctcccaaggtt
ggcacattgaaggatggagaagtcttacacactcggtagctgcccctttc
tatggagaagtcttacacacatggtagccgccccttccaacacttcactt
tctaaggtctcacttactcctaaccagctgaggcctgaaaatattaaatg
ggaaattccagaaatgctgttttacattctggattgttctgagcagtgtg
attaaatatattgccaaccccacccattccagaaaatacattattgctgt
acctgacatacccatgttgtatatactccctgctccctagtcacgtaata
gctgtcttggttgtatgacttgtggggcagtggaccatgacaggggcctg
gtgcccaggagcaggtaaagctcctaccgtcccttcaggggcttcagggc
ttcaaagcctttagttcacccaaggactagctacttctcattatccactg
ccccacataactacccagtgaagtggaacttaagggttcttggaaagttc
tttttgacagtgtttttcttgaagcaa
gaattccaaacagctgttgggcatactgtgggatttcaggccactccctt
tacctgaccccagatcctggtcctttggttagcatggtccatcaggacca
agggcacgcctacctgaggaggagcctgagaggcaggctgatgacacctc
cctcctcctcctcaggctgcctcctcacctccctcgaactgtatgtgatg
gttagaccaggaaatgaaatgtctattcttcctcatgatggggaagcctg
gctcagagaaggcaaactacttgtccaggttacagagctaacttcttctt
cctaggctcagtgtccagtaggatgtaggtccccaggccttctctacagg
gagatgagggcacttcttggaaactgagccttggaagactatcatcacag
gtgcttgtgcctgcaaccctaactccccacccccaccctctatcaggctc
agagcccagaactcctccctgggcatgatggcgctgatacaggccgagat
tcactgttccaacctacttgccaacaagcaatagaccagtgttagcaaag
acacggctgcagtcctctggagagagcgccgaggagacagcagggtgctt
tgtgtagatgctgccaggaggcgttcatctcagcatcccgaagccagatg
tccaggagattgtgaggtagccccagcacaggccagaggttggattagcc
caggttaggaaggttgctgagtctggctctcccagttaccagctgtgcct
tcatgtgtaatgtgtggacagtatattttatctcaattgggcgttgtaaa
gactgagttaatatgtagaaagcactgggtccttttcctgggagtggggg
cagccaagtcttctggaaccaggtactccttccaggtactccctccagct
ctcacatcttgtctcagctgaactctgcttggcaaaccagacagcatggg
tgggcagccggtgtgcactgcagtgagacactaa
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr17_87458081_87459110
seq2: B6Ng01-051L11.b_42_1068

seq1  GAATTCTCTGCCGTGAAGTGCAAACCCATGTGCCTAAGGTCCGGTTACAA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTCTGCCGTGAAGTGCAAACCCATGTGCCTAAGGTCCGGTTACAA  50

seq1  CCACTTGGCTGCAAAGCGCTGAGCTCAGTCAGTCAGCAGCACCTTCTCTA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCACTTGGCTGCAAAGCGCTGAGCTCAGTCAGTCAGCAGCACCTTCTCTA  100

seq1  AGCCTTCTTGTCTTGGGGAAGCAGAAAGATCATCGTCCTATGTGTGGCCA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCCTTCTTGTCTTGGGGAAGCAGAAAGATCATCGTCCTATGTGTGGCCA  150

seq1  TGGTGGAACAGGACACAAACCTTCCCTGCTCCTAGGAACTAAATCCCGCC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGTGGAACAGGACACAAACCTTCCCTGCTCCTAGGAACTAAATCCCGCC  200

seq1  TTATGGGCCCTGTCTTTCCAGAAAACAGATAGTCACAGAGCAGCGTGTAC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATGGGCCCTGTCTTTCCAGAAAACAGATAGTCACAGAGCAGCGTGTAC  250

seq1  TAGGAAGTTTCAGAGAAAGGATCCATAAGTATTGGTGAACCAAGAAACCA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGGAAGTTTCAGAGAAAGGATCCATAAGTATTGGTGAACCAAGAAACCA  300

seq1  AAACAGAAGAGAAAAGTTGTTTAAAAAAATATCCTTTCTGATCTCATAGC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACAGAAGAGAAAAGTTGTTTAAAAAAATATCCTTTCTGATCTCATAGC  350

seq1  CAAATACAAGGTAAACCCAGGCAGAGATGCACTCAGACATCCTATTGTGT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAATACAAGGTAAACCCAGGCAGAGATGCACTCAGACATCCTATTGTGT  400

seq1  TCCCTCAGAACTGTGCTTTTGTGGAATGATATTGGACACATCTTGAAAGA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCCTCAGAACTGTGCTTTTGTGGAATGATATTGGACACATCTTGAAAGA  450

seq1  TGCATAGTGGAGATTTACAGTTTTATCCATTGAATTACTCTCCCAAGGTT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCATAGTGGAGATTTACAGTTTTATCCATTGAATTACTCTCCCAAGGTT  500

seq1  GGCACATTGAAGGATGGAGAAGTCTTACACACTCGGTAGCTGCCCCTTTC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCACATTGAAGGATGGAGAAGTCTTACACACTCGGTAGCTGCCCCTTTC  550

seq1  TATGGAGAAGTCTTACACACATGGTAGCCGCCCCTTCCAACACTTCACTT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATGGAGAAGTCTTACACACATGGTAGCCGCCCCTTCCAACACTTCACTT  600

seq1  TCTAAGGTCTCACTTACTCCTAACCAGCTGAGGCCTGAAAATATTAAATG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTAAGGTCTCACTTACTCCTAACCAGCTGAGGCCTGAAAATATTAAATG  650

seq1  GGAAATTCCAGAAATGCTGTTTTACATTCTGGATTGTTCTGAGCAGTGTG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAAATTCCAGAAATGCTGTTTTACATTCTGGATTGTTCTGAGCAGTGTG  700

seq1  ATTAAATATATTGCCAACCCCACCCATTCCAGAAAATACATTATTGCTGT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTAAATATATTGCCAACCCCACCCATTCCAGAAAATACATTATTGCTGT  750

seq1  ACCTGACATACCCATGTTGTATATACTCCCTGCTCCCTAGTCACGTAATA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCTGACATACCCATGTTGTATATACTCCCTGCTCCCTAGTCACGTAATA  800

seq1  GCTGTCTTGGTTGTATGACTTGTGGGGCAGTGGACCATGACAGGGGCCTG  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTGTCTTGGTTGTATGACTTGTGGGGCAGTGGACCATGACAGGGGCCTG  850

seq1  GTGCCCAGGAGCAGGTAAAGCTCCTACCGTCCCTTCAGGGGCTTCAGGGC  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGCCCAGGAGCAGGTAAAGCTCCTACCGTCCCTTCAGGGGCTTCAGGGC  900

seq1  TTCAAAGCCTTTAGCTCAACCAAGGACTAGGCTACTTCTCATTATCCACT  950
      |||||||||||||| ||| |||||||||| ||||||||||||||||||||
seq2  TTCAAAGCCTTTAGTTCACCCAAGGACTA-GCTACTTCTCATTATCCACT  949

seq1  GCCCCACAATAACTACCCAGTGAAGTGGAAACTTAAGGGTTCTTTGGAAA  1000
      ||||||| |||||||||||||||||||| ||||||||||||| |||||||
seq2  GCCCCAC-ATAACTACCCAGTGAAGTGG-AACTTAAGGGTTC-TTGGAAA  996

seq1  GTTCTTTTGAACAGTGTTTTTC-TGAAGCAA  1030
      ||||||||  |||||||||||| ||||||||
seq2  GTTCTTTTTGACAGTGTTTTTCTTGAAGCAA  1027

seq1: chr17_87635173_87636156
seq2: B6Ng01-051L11.g_67_1050 (reverse)

seq1  TTAGTGTCTCACTGCAGTGCACACCGGCTGCCCACCCATGCTGTCTGGCT  50
      |||||||||||||||||||||||||||||||||||||||||||||||| |
seq2  TTAGTGTCTCACTGCAGTGCACACCGGCTGCCCACCCATGCTGTCTGG-T  49

seq1  TGGCCAAGCAGAGCTCAGCTGTAGACAAGATGGTGAGAGCTGGAGGGAGT  100
      | ||||||||||| ||||||| ||||||||| ||||||||||||||||||
seq2  TTGCCAAGCAGAGTTCAGCTG-AGACAAGAT-GTGAGAGCTGGAGGGAGT  97

seq1  ACCTGGAGGGAGTACCTGGTTCCAGAAGGCTTGGCTGCCCCCACTCCCAA  150
      ||||||| |||||||||||||||||||| |||||||||||||||||||| 
seq2  ACCTGGAAGGAGTACCTGGTTCCAGAAGACTTGGCTGCCCCCACTCCCAG  147

seq1  GAAAAGGA-CCAGTGCTTTCTACATATTAACTCAGTCTTTACAACGCCCA  199
      |||||||| |||||||||||||||||||||||||||||||||||||||||
seq2  GAAAAGGACCCAGTGCTTTCTACATATTAACTCAGTCTTTACAACGCCCA  197

seq1  ATTGAGAT-AAATATACTGTCCACACATTACACATGAAGGCACAGCTGGT  248
      |||||||| |||||||||||||||||||||||||||||||||||||||||
seq2  ATTGAGATAAAATATACTGTCCACACATTACACATGAAGGCACAGCTGGT  247

seq1  AACTGGGAGAGCCAGACTCAGCAACCTTCCTAACCTGGGCTAATCCAACC  298
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTGGGAGAGCCAGACTCAGCAACCTTCCTAACCTGGGCTAATCCAACC  297

seq1  TCTGGCCTGTGCTGGGGCTACCTCACAATCTCCTGGACATCTGGCTTCGG  348
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGGCCTGTGCTGGGGCTACCTCACAATCTCCTGGACATCTGGCTTCGG  347

seq1  GATGCTGAGATGAACGCCTCCTGGCAGCATCTACAC-AAGCACCCTGCTG  397
      |||||||||||||||||||||||||||||||||||| |||||||||||||
seq2  GATGCTGAGATGAACGCCTCCTGGCAGCATCTACACAAAGCACCCTGCTG  397

seq1  TCTCCTCGGCGCTCTCTCCAGAGGACTGCAGCCGTGTCTTTGCTAACACT  447
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCCTCGGCGCTCTCTCCAGAGGACTGCAGCCGTGTCTTTGCTAACACT  447

seq1  GGTCTATTGCTTGTTGGCAAGTAGGTTGGAACAGTGAATCTCGGCCTGTA  497
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTCTATTGCTTGTTGGCAAGTAGGTTGGAACAGTGAATCTCGGCCTGTA  497

seq1  TCAGCGCCATCATGCCCAGGGAGGAGTTCTGGGCTCTGAGCCTGATAGAG  547
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGCGCCATCATGCCCAGGGAGGAGTTCTGGGCTCTGAGCCTGATAGAG  547

seq1  GGTGGGGGTGGGGAGTTAGGGTTGCAGGCACAAGCACCTGTGATGATAGT  597
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTGGGGGTGGGGAGTTAGGGTTGCAGGCACAAGCACCTGTGATGATAGT  597

seq1  CTTCCAAGGCTCAGTTTCCAAGAAGTGCCCTCATCTCCCTGTAGAGAAGG  647
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCCAAGGCTCAGTTTCCAAGAAGTGCCCTCATCTCCCTGTAGAGAAGG  647

seq1  CCTGGGGACCTACATCCTACTGGACACTGAGCCTAGGAAGAAGAAGTTAG  697
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGGGGACCTACATCCTACTGGACACTGAGCCTAGGAAGAAGAAGTTAG  697

seq1  CTCTGTAACCTGGACAAGTAGTTTGCCTTCTCTGAGCCAGGCTTCCCCAT  747
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTGTAACCTGGACAAGTAGTTTGCCTTCTCTGAGCCAGGCTTCCCCAT  747

seq1  CATGAGGAAGAATAGACATTTCATTTCCTGGTCTAACCATCACATACAGT  797
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATGAGGAAGAATAGACATTTCATTTCCTGGTCTAACCATCACATACAGT  797

seq1  TCGAGGGAGGTGAGGAGGCAGCCTGAGGAGGAGGAGGGAGGTGTCATCAG  847
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCGAGGGAGGTGAGGAGGCAGCCTGAGGAGGAGGAGGGAGGTGTCATCAG  847

seq1  CCTGCCTCTCAGGCTCCTCCTCAGGTAGGCGTGCCCTTGGTCCTGATGGA  897
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGCCTCTCAGGCTCCTCCTCAGGTAGGCGTGCCCTTGGTCCTGATGGA  897

seq1  CCATGCTAACCAAAGGACCAGGATCTGGGGTCAGGTAAAGGGAGTGGCCT  947
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCATGCTAACCAAAGGACCAGGATCTGGGGTCAGGTAAAGGGAGTGGCCT  947

seq1  GAAATCCCACAGTATGCCCAACAGCTGTTTGGAATTC  984
      |||||||||||||||||||||||||||||||||||||
seq2  GAAATCCCACAGTATGCCCAACAGCTGTTTGGAATTC  984