BAC Information

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BAC

Clone NameB6Ng01-051P11
Chromosome13 (Build37)17 (Build37)
Map Location 74,932,632 - 74,933,62395,238,425 - 95,238,936
singlet/doubletsingletsinglet
Overlap geneCast
Upstream geneSlc12a7, Nkd2, EG666360, Trip13, Brd9, Zdhhc11, LOC100042909, 2900041A09Rik, LOC621824, Cep72, Slc9a3, Exoc3, Ahrr, Pdcd6, Sdha, Ccdc127, AI595366, Zfp72, LOC666670, LOC634386, LOC100042547, LOC666683, LOC547136, BC012278, LOC434490, Arts1, LOC622204
Downstream geneEG544954, Pcsk1, LOC672443, LOC666764, LOC100042606, LOC100042986, Ell2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-051P11.bB6Ng01-051P11.g
ACCDH875458DH875459
length984523
definitionDH875458|Mus musculus domesticus DNA, BAC clone: B6Ng01-051P11, 5' end.DH875459|Mus musculus domesticus DNA, BAC clone: B6Ng01-051P11, 3' end.
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(74,932,632 - 74,933,623)(95,238,425 - 95,238,936)
sequence
gaattcactcggacaaccagatccttctacggcaaaactttattgcttca
ttatcaggaagaccccatacccggaaaatggagctgcttaaatacacctc
cgtgtgacgtgtcagctcctgattagctgctcactcatcaccccactact
acaccccgagatgggcagtgacttggcatgaatttactccagcacctgcg
cacattgctattttactagttaggcactgcagaagccagcgccatcttgt
aatggcgattgctcacggctttccacactagtctaatggctagtcagggc
tacctgggaagattttgtctgaaatactgttcaaaagtatttcagcatta
ttatcagatcctggaatggactcctaaacattgttttatggttataagtc
atctcaagagtccatgctgactgtggatcattcattatggcttgaaagct
catgcatgctccactatcagatgaggcacaaagtgttagagatgtgccaa
aatcagtctcatttggctttcctggacacgagtgcccaatacccattttt
tttaattcagaatccccaattttagttttttgggggttgtgtgtatcttt
gtgtgcacatgcatgttcctatgagtgtacaaaagtgtgggtgtatgcag
gtgcttatgtacctgtgtgcatatgaaggccagaagtcaacttttaatgt
cattcctcagaagtgacctaagcataccaccatacctaatgctcaaaagc
aaaagttttactaactgacctacatctctagcacccacccacatttcatg
tttagttttaaatttttatgtatttaatcatagggtagactgggttatag
tatattttttttcaggaagaagcagagttgtgtgaatgtaggcatgctat
catattagcttcccccaaaccaagtgaagcaccaaaaattactatgggac
tttgtttgtatttcctccaagtttgcacctattg
gaattccataaaaaggaccctttaatcaattaaaataggattgaagaccc
agaaatgaaccttcacaacaatggtcacttgatctttgacaaaagatcta
aaaacaaccagtggacaaaagacagccttttcaacaaatggtgctggttc
aactggatgtcagcgtgtagaagactgcaaattgatccattcttatctcc
ttgtatgaagctcaagtccaagtggatcgaagacctccacataaaaccag
atacactgaaactaatagaagagaaatggggaagagcctcgaactcatgg
gcacagaggaaaatgtcctgaacagaacaccaatggcttatgctctaaga
tcaacaatagacaaatggaacctcataacattataaagcttctgcatggc
aaaggacactgtcagtaggccaaaatggcaaccaatagattaggaaaaga
tctttagcaatcctacatgtgacagagggctaatatccaatatatacaaa
gaagtcaagaagttggacttcag
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr13_74932632_74933623
seq2: B6Ng01-051P11.b_43_1026 (reverse)

seq1  CAATAGGTGCAAAACTTTGAGGGAAAATACAAACAAATGTCCATAGTAAT  50
      |||||||||| |||||| ||||  |||||||||||||   ||||||||| 
seq2  CAATAGGTGC-AAACTTGGAGG--AAATACAAACAAAGTCCCATAGTAA-  46

seq1  TTTTTTGTTGCTTCACTTGGTTTGGGGGAAGCTAAATATGATAGCATGCC  100
       |||||| ||||||||||||||||||||||||| ||||||||||||||||
seq2  -TTTTTGGTGCTTCACTTGGTTTGGGGGAAGCT-AATATGATAGCATGCC  94

seq1  TACATTCACACAACTCTGCTTCCTCCCTGAAAAAAAAATTATACTATAA-  149
      ||||||||||||||||||||| || ||||||||||||  |||||||||| 
seq2  TACATTCACACAACTCTGCTT-CTTCCTGAAAAAAAA--TATACTATAAC  141

seq1  CCAGTCTACCCTATGAATAAATACATAAAAATTTAAAACTAAACATGAAA  199
      |||||||||||||||| |||||||||||||||||||||||||||||||||
seq2  CCAGTCTACCCTATGATTAAATACATAAAAATTTAAAACTAAACATGAAA  191

seq1  TGTGGGTGGGTGCTAGAGATGTAGGTCAGTTAGTAAAACTTTTGCTTTTG  249
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGGGTGGGTGCTAGAGATGTAGGTCAGTTAGTAAAACTTTTGCTTTTG  241

seq1  AGCATTAGGTATGGTGGTATGCTTAGGTCACTTCTGAGGAATGACATTAA  299
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCATTAGGTATGGTGGTATGCTTAGGTCACTTCTGAGGAATGACATTAA  291

seq1  AAGTTGACTTCTGGCCTTCATATGCACACAGGTACATAAGCACCTGCATA  349
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTTGACTTCTGGCCTTCATATGCACACAGGTACATAAGCACCTGCATA  341

seq1  CACCCACACTTTTGTACACTCATAGGAACATGCATGTGCACACAAAGATA  399
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACCCACACTTTTGTACACTCATAGGAACATGCATGTGCACACAAAGATA  391

seq1  CACACAACCCCCAAAAAACTAAAATTGGGGATTCTGAATTAAAAAAAATG  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACACAACCCCCAAAAAACTAAAATTGGGGATTCTGAATTAAAAAAAATG  441

seq1  GGTATTGGGCACTCGTGTCCAGGAAAGCCAAATGAGACTGATTTTGGCAC  499
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTATTGGGCACTCGTGTCCAGGAAAGCCAAATGAGACTGATTTTGGCAC  491

seq1  ATCTCTAACACTTTGTGCCTCATCTGATAGTGGAGCATGCATGAGCTTTC  549
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTCTAACACTTTGTGCCTCATCTGATAGTGGAGCATGCATGAGCTTTC  541

seq1  AAGCCATAATGAATGATCCACAGTCAGCATGGACTCTTGAGATGACTTAT  599
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGCCATAATGAATGATCCACAGTCAGCATGGACTCTTGAGATGACTTAT  591

seq1  AACCATAAAACAATGTTTAGGAGTCCATTCCAGGATCTGATAATAATGCT  649
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACCATAAAACAATGTTTAGGAGTCCATTCCAGGATCTGATAATAATGCT  641

seq1  GAAATACTTTTGAACAGTATTTCAGACAAAATCTTCCCAGGTAGCCCTGA  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAATACTTTTGAACAGTATTTCAGACAAAATCTTCCCAGGTAGCCCTGA  691

seq1  CTAGCCATTAGACTAGTGTGGAAAGCCGTGAGCAATCGCCATTACAAGAT  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAGCCATTAGACTAGTGTGGAAAGCCGTGAGCAATCGCCATTACAAGAT  741

seq1  GGCGCTGGCTTCTGCAGTGCCTAACTAGTAAAATAGCAATGTGCGCAGGT  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCGCTGGCTTCTGCAGTGCCTAACTAGTAAAATAGCAATGTGCGCAGGT  791

seq1  GCTGGAGTAAATTCATGCCAAGTCACTGCCCATCTCGGGGTGTAGTAGTG  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTGGAGTAAATTCATGCCAAGTCACTGCCCATCTCGGGGTGTAGTAGTG  841

seq1  GGGTGATGAGTGAGCAGCTAATCAGGAGCTGACACGTCACACGGAGGTGT  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGTGATGAGTGAGCAGCTAATCAGGAGCTGACACGTCACACGGAGGTGT  891

seq1  ATTTAAGCAGCTCCATTTTCCGGGTATGGGGTCTTCCTGATAATGAAGCA  949
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTAAGCAGCTCCATTTTCCGGGTATGGGGTCTTCCTGATAATGAAGCA  941

seq1  ATAAAGTTTTGCCGTAGAAGGATCTGGTTGTCCGAGTGAATTC  992
      |||||||||||||||||||||||||||||||||||||||||||
seq2  ATAAAGTTTTGCCGTAGAAGGATCTGGTTGTCCGAGTGAATTC  984

seq1: chr17_95238425_95238936
seq2: B6Ng01-051P11.g_70_591

seq1  AATTCCATAAAAAGGACCCTTTGATCAA-TGGAATAGAACTGAAGACCCA  49
      |||||||||||||||||||||| ||||| |  ||||| | ||||||||||
seq2  AATTCCATAAAAAGGACCCTTTAATCAATTAAAATAGGATTGAAGACCCA  50

seq1  GAAATGAACCATCAC-ACCTTGGTCACTTGATCTTTGACAAAAGATCTAA  98
      |||||||||| |||| ||  ||||||||||||||||||||||||||||||
seq2  GAAATGAACCTTCACAACAATGGTCACTTGATCTTTGACAAAAGATCTAA  100

seq1  AAACATCCAGTGGACAAAAGACAGCATTTCCAACAAATGGTGCTGGTTCA  148
      ||||| ||||||||||||||||||| ||| ||||||||||||||||||||
seq2  AAACAACCAGTGGACAAAAGACAGCCTTTTCAACAAATGGTGCTGGTTCA  150

seq1  ACTGGAGGTCAGCGTGTGGAAGACTGCAAATCGATCCATTCTTATCTCCT  198
      |||||| |||||||||| ||||||||||||| ||||||||||||||||||
seq2  ACTGGATGTCAGCGTGTAGAAGACTGCAAATTGATCCATTCTTATCTCCT  200

seq1  TGTATGAAGCTCAAGTCCAGGTGGATCAAAGACCTCCACATAAAACCAGA  248
      ||||||||||||||||||| ||||||| ||||||||||||||||||||||
seq2  TGTATGAAGCTCAAGTCCAAGTGGATCGAAGACCTCCACATAAAACCAGA  250

seq1  TAACACTGAAACTAATAGAAGAGAAATGGGGAAGAGCCTTGAACTCATGG  298
      | ||||||||||||||||||||||||||||||||||||| ||||||||||
seq2  T-ACACTGAAACTAATAGAAGAGAAATGGGGAAGAGCCTCGAACTCATGG  299

seq1  GCACAG-GGGAAATGTCCTGAA--------CAATGGCTTATGCTCTAAGA  339
      |||||| || ||||||||||||        ||||||||||||||||||||
seq2  GCACAGAGGAAAATGTCCTGAACAGAACACCAATGGCTTATGCTCTAAGA  349

seq1  TCAACAATAGACAAACAGGTCCTCATAAAATTGCAAAGCTTCTGTATGAC  389
      |||||||||||||||  |  |||||||| |||  |||||||||| ||| |
seq2  TCAACAATAGACAAATGGAACCTCATAACATTATAAAGCTTCTGCATGGC  399

seq1  AAAGGACAGTGTCAATAGACCAAAATGGCAACCAACAGATTGGAAAAAGA  439
      |||||||| ||||| ||| |||||||||||||||| ||||| | ||||||
seq2  AAAGGACACTGTCAGTAGGCCAAAATGGCAACCAATAGATTAGGAAAAGA  449

seq1  TCTTTACCAATCCTATATCTGACTGAGGGCTAATATCCAATATATACAAA  489
      |||||| |||||||| || |||| ||||||||||||||||||||||||||
seq2  TCTTTAGCAATCCTACATGTGACAGAGGGCTAATATCCAATATATACAAA  499

seq1  GAACTCTAGAAGTTGAACTTCAG  512
      ||| || |||||||| |||||||
seq2  GAAGTCAAGAAGTTGGACTTCAG  522