BAC Information

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BAC

Clone NameB6Ng01-052C13
Chromosome17 (Build37)
Map Location 78,673,671 - 78,801,510
singlet/doubletdoublet
Overlap geneCrim1, Fez2
Upstream geneLOC545234, LOC100043887, LOC668795, LOC383275
Downstream geneLOC100043888, Hdac1-ps, Vit, Strn, Heatr5b, 2310002B06Rik, EG625054, Eif2ak2, 2410078J06Rik, Cebpz, 2410091C18Rik, Prkcn, LOC675425, Qpct, LOC668812, LOC383277, Cdc42ep3, LOC639964
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-052C13.bB6Ng01-052C13.g
ACCDH875596DH875597
length835936
definitionDH875596|Mus musculus domesticus DNA, BAC clone: B6Ng01-052C13, 5' end.DH875597|Mus musculus domesticus DNA, BAC clone: B6Ng01-052C13, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(78,800,679 - 78,801,510)(78,673,671 - 78,674,622)
sequence
gaattcctaagtttacgacagttgtctttgatgtacctttaaagaaattt
gggaagtgagattttcttacacttggatctgtgtttgtatatgacttcac
tggactgtaactaccgtgtggttggctgtcactaagaggttctgaatatc
cttacccagcacggggtggctctgagcctggcagctgatgcattgtgatt
attgccaggcctgcctccctgctgggtgggatcccgttatgatctgggat
tgtactgcggtttgaccagaggtctgaggctgggctgatttaattccttt
gtgttttgtggcttctttgtaacctttgcaaggttctctgacgccctaca
ttattttcctctgatgtgatttggccactgctctgtagataagcccttat
cttgctggagtactgatccaaaatccagtcctgatattggataaaatacg
ataaatatctgaccattgcctaacgttcccaacaccttcctcagaccata
tggcttagacagtggaattcaactgtctcagagctttgtaggccagtgtt
aaaatccaactccttggcttgtacatggggacagctgtgtttcccctggg
ttcttggcatggggggggggtacctttgtcctctttcttcattctggaaa
gctagcagttacgttggattaaagtccatgcagtaaactcatttgcactg
tatgacctaagtcctttccctgcagctcatccagtctcatttgcgaggtt
gcaggcattatgggctttcagcaatggtctcctggctctcccgtgctttg
ggagtgctgaggaaagactgaagtgacttccgtgg
gaattctgtagtgtccaaagaattcaaatctggggtcctttgagttatcc
tagaagtaattggcactcccagagatgtgtcagagtgaggtgtacctgta
aggtgggtttactgcccacaggcagaaggagtcagggtcgtgttggagga
ggaccctgcaccattaactctgcaatgactccatgttttccttgtccgca
ttatgctgcttgctctgtaggaactagtgtgtagcatcctgctgctattt
aaagtgaccgtgtcaatggattttgaagtaaaagaaaggcttcaccctca
aatggacctcgacaaaatacccaaagatgataacaatctggccgggtgac
tttacctatctcttttaaagtttctttttcccccccacttaccatcgagt
agctgttattttccttttacttaaaaacctagtttcaagcagaaaactct
gaaatgcatttgcccacttggagtttcggttttactttctctgcctggta
tcctgtcctggcaaagacctagaagcaaccactgccttatcatggagatt
tcagtgattaggctgggataacactttgcctaataataattattactatt
atatcagtttatactacataaccatacctacccccaaagaaagattacta
atatggcgaaactaattcatctctctctaattatttttgttgagagccat
attgtcactttactctctatatatctggcgcaatttcttcctacaagatg
tcagttgcaacgtcaccatggcaatcagacataaaagttgctaatagctg
aagtactatatatagatctgtaactgcttttggggaagatataaaggacc
tctttttaatagattaaaaaaaaattgaactaagtattgctttctcattc
gtagaatggcgataggctactcttcctttttttttt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr17_78800679_78801510
seq2: B6Ng01-052C13.b_41_875 (reverse)

seq1  CCACGGAAGTCACTTCAGTTCTTCCTCAGCACT-CCAAAGCACGGGAGAG  49
      |||||||||||||||||||  |||||||||||| ||||||||||||||||
seq2  CCACGGAAGTCACTTCAGTCTTTCCTCAGCACTCCCAAAGCACGGGAGAG  50

seq1  CCAGGAGGCCATTGCTG-AAGCCC-TAATGCCTGC-ACCTCGC-AATGAG  95
      ||||||| ||||||||| |||||| |||||||||| ||||||| ||||||
seq2  CCAGGAGACCATTGCTGAAAGCCCATAATGCCTGCAACCTCGCAAATGAG  100

seq1  ACTGGATGAGCTGCAGGG-AAGGACTTAGGTCATACAGTGCAAATGAGTT  144
      |||||||||||||||||| |||||||||||||||||||||||||||||||
seq2  ACTGGATGAGCTGCAGGGAAAGGACTTAGGTCATACAGTGCAAATGAGTT  150

seq1  TACTGCATGGACTTTAATCCAACGTAACTGCTAGCTTTCCAGAATGAAGA  194
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACTGCATGGACTTTAATCCAACGTAACTGCTAGCTTTCCAGAATGAAGA  200

seq1  AAGAGGACAAAGGTGACCCCCCCCCCCTGCCAAGAACCCAGGGGAAACAC  244
      |||||||||||||| ||||||||||| |||||||||||||||||||||||
seq2  AAGAGGACAAAGGT-ACCCCCCCCCCATGCCAAGAACCCAGGGGAAACAC  249

seq1  AGCTGTCCCCATGTACAAGCCAAGGAGTTGGATTTTAACACTGGCCTACA  294
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCTGTCCCCATGTACAAGCCAAGGAGTTGGATTTTAACACTGGCCTACA  299

seq1  AAGCTCTGAGA-AGTTGAATTCCACTGTCTAAGCCATCTCGTCTGAGGAA  343
      ||||||||||| ||||||||||||||||||||||||| | ||||||||||
seq2  AAGCTCTGAGACAGTTGAATTCCACTGTCTAAGCCATATGGTCTGAGGAA  349

seq1  CGTTTTAGGAATGCTAGGTAACTGACACATATTTCTCCTATCTTATCCTA  393
       || || |||| | |||| ||  | || |||||| || ||| |||||| |
seq2  GGTGTTGGGAACGTTAGGCAATGGTCAGATATTTATCGTATTTTATCCAA  399

seq1  TATCAGGACTGGATTTTGGATTTAGTACTCCAGCAATGCTAAGGGCTTAT  443
      |||||||||||||||||||| | ||||||||||||| | |||||||||||
seq2  TATCAGGACTGGATTTTGGA-TCAGTACTCCAGCAA-GATAAGGGCTTAT  447

seq1  CTACAGAGCTGTGGCCAAATCACATCAGAGGAAAAAAATGTAGCGTGTCA  493
      ||||||||| ||||||||||||||||||||||||| ||||||| | ||||
seq2  CTACAGAGCAGTGGCCAAATCACATCAGAGGAAAATAATGTAGGGCGTCA  497

seq1  GAGAACCTTCCAAAGGTTACAAAGAAGCCACAAAACACAAAGGAATTAAG  543
      ||||||||| ||||||||||||||||||||||||||||||||||||||| 
seq2  GAGAACCTTGCAAAGGTTACAAAGAAGCCACAAAACACAAAGGAATTAAA  547

seq1  ACAGCCCAGCCTCAGACCTCTGGTCAAACCACAGTACAATCCCAGATCAT  593
       ||||||||||||||||||||||||||||| |||||||||||||||||||
seq2  TCAGCCCAGCCTCAGACCTCTGGTCAAACCGCAGTACAATCCCAGATCAT  597

seq1  AACGGGATCCCACCCAGCAGGGAGGCAGGCCTGGCAATAATCACAATGCA  643
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACGGGATCCCACCCAGCAGGGAGGCAGGCCTGGCAATAATCACAATGCA  647

seq1  TCAGCTGCCAGGCTCAGAGCCACCCCGTGCTGGGTATGGCTATTCAGAAC  693
      |||||||||||||||||||||||||||||||||||| || ||||||||||
seq2  TCAGCTGCCAGGCTCAGAGCCACCCCGTGCTGGGTAAGGATATTCAGAAC  697

seq1  CTCTTCGTGACAGCCAACCACATGGTAGTTACAGTCCAGTGCTGTCATAT  743
      ||||| |||||||||||||||| ||||||||||||||||||  |||||||
seq2  CTCTTAGTGACAGCCAACCACACGGTAGTTACAGTCCAGTGAAGTCATAT  747

seq1  ACAAACACAGATCCAAGTCTAAGAAAATCTCACTTCCCAAATTTCTTCAA  793
      |||||||||||||||||| |||||||||||||||||||||||||||| ||
seq2  ACAAACACAGATCCAAGTGTAAGAAAATCTCACTTCCCAAATTTCTTTAA  797

seq1  AGCTACATCAAAGACAACTGTTTGTAAACTTAGGAATTC  832
      || ||||||||||||||||| | ||||||||||||||||
seq2  AGGTACATCAAAGACAACTG-TCGTAAACTTAGGAATTC  835

seq1: chr17_78673671_78674622
seq2: B6Ng01-052C13.g_68_1003

seq1  GAATTCTGTAGTGTCCAAAGAATTCAAATCTGGGGTCCTTTGAGTTATCC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTGTAGTGTCCAAAGAATTCAAATCTGGGGTCCTTTGAGTTATCC  50

seq1  TAGAAGTAATTGGCACTCCCAGAGATGTGTCAGAGTGAGGTGTACCTGTA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGAAGTAATTGGCACTCCCAGAGATGTGTCAGAGTGAGGTGTACCTGTA  100

seq1  AGGTGGGTTTACTGCCCACAGGCAGAAGGAGTCAGGGTCAGTGTTGGAGG  150
      ||||||||||||||||||||||||||||||||||||||| ||||||||||
seq2  AGGTGGGTTTACTGCCCACAGGCAGAAGGAGTCAGGGTC-GTGTTGGAGG  149

seq1  AGGACCCTGCAGCATTAACTCTGCAGTAGACTCCATGTTTTCCTTGTCCG  200
      ||||||||||| ||||||||||||| | ||||||||||||||||||||||
seq2  AGGACCCTGCACCATTAACTCTGCAAT-GACTCCATGTTTTCCTTGTCCG  198

seq1  CATTATGCTGCTTGCTCTGTAGGAACTAGTGTGTAGCATCCTGCTGCTAT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTATGCTGCTTGCTCTGTAGGAACTAGTGTGTAGCATCCTGCTGCTAT  248

seq1  TTAAAGTGACCGTGTCAATGGATTTTGAAGTAGAAGAAAGGCTTCACCAT  300
      |||||||||||||||||||||||||||||||| ||||||||||||||| |
seq2  TTAAAGTGACCGTGTCAATGGATTTTGAAGTAAAAGAAAGGCTTCACCCT  298

seq1  CAGATGGACCTCGACAAAATACACAAGGATAAGAAGAATCTGGCCGGGTG  350
      || ||||||||||||||||||| ||| ||| | || ||||||||||||||
seq2  CAAATGGACCTCGACAAAATACCCAAAGATGATAACAATCTGGCCGGGTG  348

seq1  ACTTTACCTATCTCTTTTAAAGTTTCTTTTTCCCCCCCACTTACCATCGA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTTACCTATCTCTTTTAAAGTTTCTTTTTCCCCCCCACTTACCATCGA  398

seq1  GTAGCTGTTATTTTCCTTTTACTTAAAAACCTAGTTTCAAGCAGAAAACT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAGCTGTTATTTTCCTTTTACTTAAAAACCTAGTTTCAAGCAGAAAACT  448

seq1  CTGAAATGCATTTGCCCACTTGGAGTTTCGGTTTTACTTTCTCTGCCTGG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGAAATGCATTTGCCCACTTGGAGTTTCGGTTTTACTTTCTCTGCCTGG  498

seq1  TATCCTGTCCTGGCAAAGACCTAGAAGCAACCACTGTCTTATCATGGAGA  550
      |||||||||||||||||||||||||||||||||||| |||||||||||||
seq2  TATCCTGTCCTGGCAAAGACCTAGAAGCAACCACTGCCTTATCATGGAGA  548

seq1  TTTAAGTGATTAGGCTGGGATAACACTTTGCATAATAATAATAATTACTA  600
      ||| ||||||||||||||||||||||||||| |||||||||| |||||||
seq2  TTTCAGTGATTAGGCTGGGATAACACTTTGCCTAATAATAATTATTACTA  598

seq1  TTATATCAGTTTATACTAGATAACCATACCAACCCCCAAAGAAAGATTAC  650
      |||||||||||||||||| ||||||||||| |||||||||||||||||||
seq2  TTATATCAGTTTATACTACATAACCATACCTACCCCCAAAGAAAGATTAC  648

seq1  TAATATGGTGAAACTAATTTATCTTTCTTTAATTATTTTTGTTGAGAGCC  700
      |||||||| |||||||||| |||| ||| |||||||||||||||||||||
seq2  TAATATGGCGAAACTAATTCATCTCTCTCTAATTATTTTTGTTGAGAGCC  698

seq1  ATATTGTCACTTTAGTCTCTATATATCTGGGGCAATTTTTTTTTATAAGA  750
      |||||||||||||| ||||||||||||||| ||||||| ||  || ||||
seq2  ATATTGTCACTTTACTCTCTATATATCTGGCGCAATTTCTTCCTACAAGA  748

seq1  TGCCAGTTGCAATGTTACCATGGCAACCAGACATAAAAGCTTGCTAATTA  800
      || ||||||||| || |||||||||| |||||||||||| ||||||| ||
seq2  TGTCAGTTGCAACGTCACCATGGCAATCAGACATAAAAG-TTGCTAA-TA  796

seq1  GTTGAAGTACTATATATAGATTTGTTAAATGCTTTTGGGGAAGAGTATAG  850
      | ||||||||||||||||||| || ||| ||||||||||||||| |||| 
seq2  GCTGAAGTACTATATATAGATCTG-TAACTGCTTTTGGGGAAGA-TATA-  843

seq1  AAGGACCTCTTTTCAAATAGATTAAAAAAAAATTGAAACTAAAGTAATGC  900
      |||||||||||||  |||||||||||||||||||| |||| ||||| || 
seq2  AAGGACCTCTTTT-TAATAGATTAAAAAAAAATTG-AACT-AAGTATTG-  889

seq1  CTTTCTCATTCGTGGGAAATTGGCGATATGGCTACAGTTTCCTTTTTTTT  950
      |||||||||||||   | | |||||||| ||||||   ||||||||||||
seq2  CTTTCTCATTCGT---AGAATGGCGATA-GGCTAC-TCTTCCTTTTTTTT  934

seq1  TT  952
      ||
seq2  TT  936