BAC Information

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BAC

Clone NameB6Ng01-052F22
Chromosome17 (Build37)
Map Location 28,956,218 - 29,104,337
singlet/doubletdoublet
Overlap geneBrpf3, Pnpla1, 4930539E08Rik, Pxt1, Kctd20
Upstream geneD17Wsu92e, Snrpc, F830021D11Rik, Taf11, Anks1, Tcp11, 4930526A20Rik, Scube3, LOC100042764, Zfp523, Def6, Ppard, 1810013A23Rik, Fance, Rpl10a, Tead3, Tulp1, Fkbp5, 4930511I11Rik, Gm749, Clps, Tmhs, Srpk1, Slc26a8, Mapk14, LOC100043318, Mapk13
Downstream geneStk38, Sfrs3, LOC100042815, Cdkn1a, 9830134C10Rik, LOC100043341, Cpne5, Ppil1, BC004004, LOC100043348, Pi16, Mtch1, Fgd2, Pim1, 4933413N12Rik, Tbc1d22b, Rnf8, 1300018I05Rik, Mdga1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-052F22.bB6Ng01-052F22.g
ACCDH875747DH875748
length758621
definitionDH875747|Mus musculus domesticus DNA, BAC clone: B6Ng01-052F22, 5' end.DH875748|Mus musculus domesticus DNA, BAC clone: B6Ng01-052F22, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(29,103,584 - 29,104,337)(28,956,218 - 28,956,836)
sequence
gaattcccttcgcctgccccgcacctccccaggtgggcacacccaacccc
agcacagactgtttctctgacgttttggtccttttgctaataagcaattt
gtctgattgtgaaaccactcacccggtgtaagagtgggctgctgtgccga
atgtgaggcaacagttcacttcctctcctgcaccaggaggtgaatgcaaa
gattcaaccaagagcaccagacccaaaagctcgtttgccagggctggtaa
agctggccgcctaattaccagagagcttcttcacccagccggaggcagac
ccggaaaagggcacagtaacaactcagaagggaaggagacaggaagaggc
atctcctaacggtgagaaaccacaggagggcagggaggcctggttagggg
tacccacacaaagaagagctccaacaactgggcagaggccgtttgtccct
aatcttgaaagtcattcggagccatctgagagagtggagcatttaagcgg
tcaagttcatctacttgtggtgggtgatgcattattatctcctggtcttc
taagacatcctctccagcagccaccaaattagtgagggatttgctgcgaa
cgcactggaaatccacatgggcgactctttccttcctctttttcccatga
catctggattaaaagggcgctgcacataattgtagatgacttcagaccgc
ccgccaggtctcctctttgatcttctctttacaggtagggtaacctgcaa
ccagaaaa
gaattccactgcctgaccatggctaagcagggtcataatacagtgggcca
gttgccctcacatgacccagacggtttcctggtcaagtctcagaggttct
tatagggatgtctgggctgtggcttgtaaaatttcaaatggagcagactt
gtttgagagctgctgagttccttatgtctgcaaacactctttctgcccgc
tgggtgttcacaaaccagaactgaggacaggtgtgaaaaccccaaagtct
gtgagaatttaatcctctagtctgacgagctgaagactcgccttattggc
tacaccagtggctttctcaagcatgagtgacatttgaaatacaaaccacc
aggctcactttgtaagccctcttccctttgtgattccctttcatttggtc
tggttataacttaggcttagaattcttacaaaacttctagttcagtgcct
agttcagtgtgtctcaacctgtgggtctctaccccgttagcaaatctcta
tctacaaagatatttacattatgattcaaaacagcagcaaagagccaggc
atggtggcgcatgtcttttaatcccagcacttgggaggcagaggcaggca
gatttctgagttttgaggcca
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr17_29103584_29104337
seq2: B6Ng01-052F22.b_43_799 (reverse)

seq1  TTTCTGGTTGCAGGTTACCCTACCTGTAAAGAGAAGATC-AAGAGGAGAC  49
      ||||||||||||||||||||||||||||||||||||||| ||||||||||
seq2  TTTCTGGTTGCAGGTTACCCTACCTGTAAAGAGAAGATCAAAGAGGAGAC  50

seq1  CTGGCGGGCGGTCTGAAGTCATCTACAATTATGTGCAGCGCCCTTTT-AT  98
      ||||||||||||||||||||||||||||||||||||||||||||||| ||
seq2  CTGGCGGGCGGTCTGAAGTCATCTACAATTATGTGCAGCGCCCTTTTAAT  100

seq1  CCAGATGTCATGGGAAAAAGAGGAAGGAAAGAGTCG-CCATGTGGATTTC  147
      |||||||||||||||||||||||||||||||||||| |||||||||||||
seq2  CCAGATGTCATGGGAAAAAGAGGAAGGAAAGAGTCGCCCATGTGGATTTC  150

seq1  CAGTGCGTTCGCAGCAAATCCCTCACTAATTTGGTGGCTGCTGGAGAGGA  197
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGTGCGTTCGCAGCAAATCCCTCACTAATTTGGTGGCTGCTGGAGAGGA  200

seq1  TGTCTTAGAAGACCAGGAGATAATAATGCATCACCCACCACAAGTAGATG  247
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTCTTAGAAGACCAGGAGATAATAATGCATCACCCACCACAAGTAGATG  250

seq1  AACTTGACCGCTTAAATGCTCCACTCTCTCAGATGGCTCCGAATGACTTT  297
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTTGACCGCTTAAATGCTCCACTCTCTCAGATGGCTCCGAATGACTTT  300

seq1  CAAGATTAGGGACAAACGGCCTCTGCCCAGTTGTTGGAGCTCTTCTTTGT  347
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAGATTAGGGACAAACGGCCTCTGCCCAGTTGTTGGAGCTCTTCTTTGT  350

seq1  GTGGGTACCCCTAACCAGGCCTCCCTGCCCTCCTGTGGTTTCTCACCGTT  397
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGGGTACCCCTAACCAGGCCTCCCTGCCCTCCTGTGGTTTCTCACCGTT  400

seq1  AGGAGATGCCTCTTCCTGTCTCCTTCCCTTCTGAGTTGTTACTGTGCCCT  447
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGAGATGCCTCTTCCTGTCTCCTTCCCTTCTGAGTTGTTACTGTGCCCT  450

seq1  TTTCCGGGTCTGCCTCCGGCTGGGTGAAGAAGCTCTCTGGTAATTAGGCG  497
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCCGGGTCTGCCTCCGGCTGGGTGAAGAAGCTCTCTGGTAATTAGGCG  500

seq1  GCCAGCTTTACCAGCCCTGGCAAACGAGCTTTTGGGTCTGGTGCTCTTGG  547
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCAGCTTTACCAGCCCTGGCAAACGAGCTTTTGGGTCTGGTGCTCTTGG  550

seq1  TTGAATCTTTGCATTCACCTCCTGGTGCAGGAGAGGAAGTGAACTGTTGC  597
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGAATCTTTGCATTCACCTCCTGGTGCAGGAGAGGAAGTGAACTGTTGC  600

seq1  CTCACATTCGGCACAGCAGCCCACTCTTACACCGGGTGAGTGGTTTCACA  647
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCACATTCGGCACAGCAGCCCACTCTTACACCGGGTGAGTGGTTTCACA  650

seq1  ATCAGACAAATTGCTTATTAGCAAAAGGACCAAAACGTCAGAGAAACAGT  697
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCAGACAAATTGCTTATTAGCAAAAGGACCAAAACGTCAGAGAAACAGT  700

seq1  CTGTGCTGGGGTTGGGTGTGCCCACCTGGGGAGGTGCGGGGCAGGCGAAG  747
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTGCTGGGGTTGGGTGTGCCCACCTGGGGAGGTGCGGGGCAGGCGAAG  750

seq1  GGAATTC  754
      |||||||
seq2  GGAATTC  757

seq1: chr17_28956218_28956836
seq2: B6Ng01-052F22.g_70_690

seq1  GAATTCCACTGCCTGACCATGGCTAAGCAGGGTCATAATACAGTGGGCCA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCACTGCCTGACCATGGCTAAGCAGGGTCATAATACAGTGGGCCA  50

seq1  GTTGCCCTCACATGACCCAGACGGTTTCCTGGTCAAGTCTCAGAGGTTCT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTGCCCTCACATGACCCAGACGGTTTCCTGGTCAAGTCTCAGAGGTTCT  100

seq1  TATAGGGATGTCTGGGCTGTGGCTTGTAAAATTTCAAATGGAGCAGACTT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATAGGGATGTCTGGGCTGTGGCTTGTAAAATTTCAAATGGAGCAGACTT  150

seq1  GTTTGAGAGCTGCTGAGTTCCTTATGTCTGCAAACACTCTTTCTGCCCGC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTGAGAGCTGCTGAGTTCCTTATGTCTGCAAACACTCTTTCTGCCCGC  200

seq1  TGGGTGTTCACAAACCAGAACTGAGGACAGGTGTGAAAACCCCAAAGTCT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGGTGTTCACAAACCAGAACTGAGGACAGGTGTGAAAACCCCAAAGTCT  250

seq1  GTGAGAATTTAATCCTCTAGTCTGACGAGCTGAAGACTCGCCTTATTGGC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGAGAATTTAATCCTCTAGTCTGACGAGCTGAAGACTCGCCTTATTGGC  300

seq1  TACACCAGTGGCTTTCTCAAGCATGAGTGACATTTGAAATACAAACCACC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACACCAGTGGCTTTCTCAAGCATGAGTGACATTTGAAATACAAACCACC  350

seq1  AGGCTCACTTTGTAAGCCCTCTTCCCTTTGTGATTCCCTTTCATTTGGTC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGCTCACTTTGTAAGCCCTCTTCCCTTTGTGATTCCCTTTCATTTGGTC  400

seq1  TGGTTATAACTTAGGCTTAGAATTCTTACAAAACTTCTAGTTCAGTGCCT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGTTATAACTTAGGCTTAGAATTCTTACAAAACTTCTAGTTCAGTGCCT  450

seq1  AGTTCAGTGTGTCTCAACCTGTGGGTCTCTACCCCGTTAGCAAATCTCTA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTCAGTGTGTCTCAACCTGTGGGTCTCTACCCCGTTAGCAAATCTCTA  500

seq1  TCTACAAAGATATTTACATTATGATTCAAAACAGCAGCAAAGAGCCAGGC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTACAAAGATATTTACATTATGATTCAAAACAGCAGCAAAGAGCCAGGC  550

seq1  ATGGTGGCGCATGTC-TTTAATCCCAGCACTTGGGAGGCAGAGGCAGGCA  599
      ||||||||||||||| ||||||||||||||||||||||||||||||||||
seq2  ATGGTGGCGCATGTCTTTTAATCCCAGCACTTGGGAGGCAGAGGCAGGCA  600

seq1  GATTTCTGAG-TTTGAGGCCA  619
      |||||||||| ||||||||||
seq2  GATTTCTGAGTTTTGAGGCCA  621