BAC Information

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BAC

Clone NameB6Ng01-052N08
Chromosome17 (Build37)
Map Location 28,026,493 - 28,201,171
singlet/doubletdoublet
Overlap geneF830021D11Rik, Taf11, Anks1
Upstream geneKifc1, Phf1, Cuta, Syngap1, Zbtb9, Bak1, Ggnbp1, Itpr3, 2900010M23Rik, Ihpk3, Lemd2, LOC100042713, ENSMUSG00000073430, Grm4, LOC677010, Hmga1, AI413582, Nudt3, Rps10, Pacsin1, Spdef, LOC100042744, D17Wsu92e, EG666682, Snrpc
Downstream geneTcp11, 4930526A20Rik, Scube3, LOC100042764, Zfp523, Def6, Ppard, 1810013A23Rik, Fance, Rpl10a, Tead3, Tulp1, Fkbp5, 4930511I11Rik, Gm749, Clps, Tmhs, Srpk1, Slc26a8, Mapk14, LOC100043318, Mapk13, Brpf3, Pnpla1, 4930539E08Rik, Pxt1, Kctd20, Stk38, Sfrs3
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-052N08.bB6Ng01-052N08.g
ACCDH876068DH876069
length1,118866
definitionDH876068|Mus musculus domesticus DNA, BAC clone: B6Ng01-052N08, 5' end.DH876069|Mus musculus domesticus DNA, BAC clone: B6Ng01-052N08, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(28,200,044 - 28,201,171)(28,026,493 - 28,027,358)
sequence
gaattctcttttctgggctggtgagatggctcagcggttaagagcaccga
ctgctcttccaaaggtcctgagttcaaatcccagcaaccacatggtggga
tccgtaacgaaatatgatgctgtcttctggaatgtctgaagacagctaca
gtgtacttacatataataaattaatacatatttaaaaaaaagaattatct
tttctccagaaatctgattatgctgtactagtagtaccttggcaaggatt
tctttgggctgagtctgttttaaggtttgttcagctgtctgcaagttgtg
tctcttgccagcattgggatttgggcatttgttgatttatttagtagtaa
ctttccttttgaaacagacccaacagataatctggctggcctgcagctct
gccaggctgctcttaattcatgacccccctaaaagccgactactgacacg
tgccacaacacaggactgacaagcagcttttcttctggagtctggacttg
ttgagtctgatttaaacctgttggagctgctgctgtttaccgctactctg
caagagaaggcgacagacacggcaccctcacagcacgctgggcacaaatc
cacgttcctcccctgactcggctgccctggggggtatggctcctcctcac
tgggggcactggacatgcctcatgaagagcctgcaggaccttgcactgat
ggggtatcttgcagcggaggcagccagccaggctcccctaggagttcagc
taacgtagagcagagaccagaaacaccttgccttttgaggctgcctttcc
tggtgctgatctagaatggctgatgcttggctgtctgagttaactgttgt
ttgcactgttaatctgtcccaggtttaaactgtactagaaaggggaagca
gatgttcctgcttacgtgtgacggctattatcagcccaccctttgtttca
tgtggcccaaacatgaattccaatcgtttgcttttatgatgcagtgcaga
gatgtttggctgtatatacagctatgcgcatgaaatgtatcttggagttt
ttacagcatgctgaggcttctgatatcagaccctgaaacgagcctcggca
tgagcttgttgggcacaa
gaattcctgtagtcttgtgggacacatgcgataccacacccccgcttcct
actgaggaagtggctcggtgctgaggctctctcggctcctctggaatggg
agctatcactgttttactaaatgccagagtcagtttagctaccctgcact
tgtcacccagagctgcagagtggtgctgcaggagtggctcagcctgagag
ctgttgctgcccttgccggactcaaaccacttgctctccccagggtggta
gtagttgacctcttctgtgggtggcgtgactccgactaaccttgagattt
aatggtactagttgggattcagaaaggctcctggcagaggcaagtgtgtg
ttcacattacctgtcagaactggggaagcggatcagcctgaggatggggg
gctgagcccgtcagtgggcggtggtgattttgtttttgtttttaaaacac
agggaggccatggccaagccagatgagggggtggtggcctcagtgagtgg
gggtgctgcccggctccggtttttctccatgaagaggacagtctctcagc
agtcatttgacggtgtctcgttggacagcggtggccccgacgaccggatt
tcggtggacagcgatggaagtgacagctttgtgatgctcttggagtctgg
tatgtgggagcccggctgcattatccctagagggcactctctggctgatg
ctcaccccagcagggtttaggtggagtggagatagaataaaatagatact
ttcctaaccaaacaaaagagaaaatttagtacatttgttcttatggcctg
atctctaaatttcctaggatattgttatatttagattttggggtttataa
tggggtaggtgggggc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr17_28200044_28201171
seq2: B6Ng01-052N08.b_44_1161 (reverse)

seq1  TTGTGCCCACACAGCTCACTGCCCGAGGCTCTGTCTCAGGGTCTTGATAT  50
      |||||||||   |||||| || ||||||||| || |||||||| ||||||
seq2  TTGTGCCCAACAAGCTCA-TG-CCGAGGCTC-GTTTCAGGGTC-TGATAT  46

seq1  CAGAAGCCCTTCCAAGCATGCTGTAAAAAACTCC-AGATACATTTTCATG  99
      ||||||||  ||  |||||||||| ||||||||| ||||||| |||||||
seq2  CAGAAGCC--TC--AGCATGCTGT-AAAAACTCCAAGATACA-TTTCATG  90

seq1  CGCATAGCTGTATATACAGCCAAACATCTCTGCACTGCATTCATAAAAGC  149
      ||||||||||||||||||||||||||||||||||||||| ||||||||||
seq2  CGCATAGCTGTATATACAGCCAAACATCTCTGCACTGCA-TCATAAAAGC  139

seq1  AAACGATTGGAATTCATGTTTGGGCCACATGAAACAAAGGGTGGGCTGAT  199
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACGATTGGAATTCATGTTTGGGCCACATGAAACAAAGGGTGGGCTGAT  189

seq1  AATAGCCGTCACACGTAAGCAGGAACATCTGCTTCCCCTTTCTAGTACAG  249
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATAGCCGTCACACGTAAGCAGGAACATCTGCTTCCCCTTTCTAGTACAG  239

seq1  TTTAAACCTGGGACAGATTAACAGTGCAAACAACAGTTAACTCAGACAGC  299
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTAAACCTGGGACAGATTAACAGTGCAAACAACAGTTAACTCAGACAGC  289

seq1  CAAGCATCAGCCATTCTAGATCAGCACCAGGAAAGGCAGCCTCAAAAGGC  349
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAGCATCAGCCATTCTAGATCAGCACCAGGAAAGGCAGCCTCAAAAGGC  339

seq1  AAGGTGTTTCTGGTCTCTGCTCTACGTTAGCTGAACTCCTAGGGGAGCCT  399
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGTGTTTCTGGTCTCTGCTCTACGTTAGCTGAACTCCTAGGGGAGCCT  389

seq1  GGCTGGCTGCCTCCGCTGCAAGATACCCCATCAGTGCAAGGTCCTGCAGG  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCTGGCTGCCTCCGCTGCAAGATACCCCATCAGTGCAAGGTCCTGCAGG  439

seq1  CTCTTCATGAGGCATGTCCAGTGCCCCCAGTGAGGAGGAGCCATACCCCC  499
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTTCATGAGGCATGTCCAGTGCCCCCAGTGAGGAGGAGCCATACCCCC  489

seq1  CAGGGCAGCCGAGTCAGGGGAGGAACGTGGATTTGTGCCCAGCGTGCTGT  549
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGGCAGCCGAGTCAGGGGAGGAACGTGGATTTGTGCCCAGCGTGCTGT  539

seq1  GAGGGTGCCGTGTCTGTCGCCTTCTCTTGCAGAGTAGCGGTAAACAGCAG  599
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGGGTGCCGTGTCTGTCGCCTTCTCTTGCAGAGTAGCGGTAAACAGCAG  589

seq1  CAGCTCCAACAGGTTTAAATCAGACTCAACAAGTCCAGACTCCAGAAGAA  649
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGCTCCAACAGGTTTAAATCAGACTCAACAAGTCCAGACTCCAGAAGAA  639

seq1  AAGCTGCTTGTCAGTCCTGTGTTGTGGCACGTGTCAGTAGTCGGCTTTTA  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGCTGCTTGTCAGTCCTGTGTTGTGGCACGTGTCAGTAGTCGGCTTTTA  689

seq1  GGGGGGTCATGAATTAAGAGCAGCCTGGCAGAGCTGCAGGCCAGCCAGAT  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGGGGTCATGAATTAAGAGCAGCCTGGCAGAGCTGCAGGCCAGCCAGAT  739

seq1  TATCTGTTGGGTCTGTTTCAAAAGGAAAGTTACTACTAAATAAATCAACA  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATCTGTTGGGTCTGTTTCAAAAGGAAAGTTACTACTAAATAAATCAACA  789

seq1  AATGCCCAAATCCCAATGCTGGCAAGAGACACAACTTGCAGACAGCTGAA  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGCCCAAATCCCAATGCTGGCAAGAGACACAACTTGCAGACAGCTGAA  839

seq1  CAAACCTTAAAACAGACTCAGCCCAAAGAAATCCTTGCCAAGGTACTACT  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAACCTTAAAACAGACTCAGCCCAAAGAAATCCTTGCCAAGGTACTACT  889

seq1  AGTACAGCATAATCAGATTTCTGGAGAAAAGATAATTCTTTTTTTTAAAT  949
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTACAGCATAATCAGATTTCTGGAGAAAAGATAATTCTTTTTTTTAAAT  939

seq1  ATGTATTAATTTATTATATGTAAGTACACTGTAGCTGTCTTCAGACATTC  999
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTATTAATTTATTATATGTAAGTACACTGTAGCTGTCTTCAGACATTC  989

seq1  CAGAAGACAGCATCATATTTCGTTACGGATCCCACCATGTGGTTGCTGGG  1049
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGAAGACAGCATCATATTTCGTTACGGATCCCACCATGTGGTTGCTGGG  1039

seq1  ATTTGAACTCAGGACCTTTGGAAGAGCAGTCGGTGCTCTTAACCGCTGAG  1099
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTGAACTCAGGACCTTTGGAAGAGCAGTCGGTGCTCTTAACCGCTGAG  1089

seq1  CCATCTCACCAGCCCAGAAAAGAGAATTC  1128
      |||||||||||||||||||||||||||||
seq2  CCATCTCACCAGCCCAGAAAAGAGAATTC  1118

seq1: chr17_28026493_28027358
seq2: B6Ng01-052N08.g_65_930

seq1  GAATTCCTGTAGTCTTGTGGGACACATGCGATACCACACCCCCGCTTCCT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCTGTAGTCTTGTGGGACACATGCGATACCACACCCCCGCTTCCT  50

seq1  ACTGAGGAAGTGGCTCGGTGCTGAGGCTCTCTCGGCTCCTCTGGAATGGG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTGAGGAAGTGGCTCGGTGCTGAGGCTCTCTCGGCTCCTCTGGAATGGG  100

seq1  AGCTATCACTGTTTTACTAAATGCCAGAGTCAGTTTAGCTACCCTGCACT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCTATCACTGTTTTACTAAATGCCAGAGTCAGTTTAGCTACCCTGCACT  150

seq1  TGTCACCCAGAGCTGCAGAGTGGTGCTGCAGGAGTGGCTCAGCCTGAGAG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTCACCCAGAGCTGCAGAGTGGTGCTGCAGGAGTGGCTCAGCCTGAGAG  200

seq1  CTGTTGCTGCCCTTGCCGGACTCAAACCACTTGCTCTCCCCAGGGTGGTA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTTGCTGCCCTTGCCGGACTCAAACCACTTGCTCTCCCCAGGGTGGTA  250

seq1  GTAGTTGACCTCTTCTGTGGGTGGCGTGACTCCGACTAACCTTGAGATTT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAGTTGACCTCTTCTGTGGGTGGCGTGACTCCGACTAACCTTGAGATTT  300

seq1  AATGGTACTAGTTGGGATTCAGAAAGGCTCCTGGCAGAGGCAAGTGTGTG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGGTACTAGTTGGGATTCAGAAAGGCTCCTGGCAGAGGCAAGTGTGTG  350

seq1  TTCACATTACCTGTCAGAACTGGGGAAGCGGATCAGCCTGAGGATGGGGG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCACATTACCTGTCAGAACTGGGGAAGCGGATCAGCCTGAGGATGGGGG  400

seq1  GCTGAGCCCGTCAGTGGGCGGTGGTGATTTTGTTTTTGTTTTTAAAACAC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTGAGCCCGTCAGTGGGCGGTGGTGATTTTGTTTTTGTTTTTAAAACAC  450

seq1  AGGGAGGCCATGGCCAAGCCAGATGAGGGGGTGGTGGCCTCAGTGAGTGG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGGAGGCCATGGCCAAGCCAGATGAGGGGGTGGTGGCCTCAGTGAGTGG  500

seq1  GGGTGCTGCCCGGCTCCGGTTTTTCTCCATGAAGAGGACAGTCTCTCAGC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGTGCTGCCCGGCTCCGGTTTTTCTCCATGAAGAGGACAGTCTCTCAGC  550

seq1  AGTCATTTGACGGTGTCTCGTTGGACAGCGGTGGCCCCGACGACCGGATT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTCATTTGACGGTGTCTCGTTGGACAGCGGTGGCCCCGACGACCGGATT  600

seq1  TCGGTGGACAGCGATGGAAGTGACAGCTTTGTGATGCTCTTGGAGTCTGG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCGGTGGACAGCGATGGAAGTGACAGCTTTGTGATGCTCTTGGAGTCTGG  650

seq1  TATGTGGGAGCCCGGCTGCATTATCCCTAGAGGGCACTCTCTGGCTGATG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATGTGGGAGCCCGGCTGCATTATCCCTAGAGGGCACTCTCTGGCTGATG  700

seq1  CTCACCCCAGCAGGGTTTAGGTGGAGTGGAGATAGAATAAAATAGATACT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCACCCCAGCAGGGTTTAGGTGGAGTGGAGATAGAATAAAATAGATACT  750

seq1  TTCCTAACCAAACAAAAGAGAAAATTTAGTACATTTGTTCTTATGGCCTG  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCTAACCAAACAAAAGAGAAAATTTAGTACATTTGTTCTTATGGCCTG  800

seq1  ATCTCTAAATTTCCTAGGATATTGTTATATTTAGATTTTGGGGTTTATAA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTCTAAATTTCCTAGGATATTGTTATATTTAGATTTTGGGGTTTATAA  850

seq1  TGGGGTAGGTGGGGGC  866
      ||||||||||||||||
seq2  TGGGGTAGGTGGGGGC  866