BAC Information

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BAC

Clone NameB6Ng01-053J17
Chromosome17 (Build37)
Map Location 73,328,585 - 73,469,167
singlet/doubletdoublet
Overlap geneLycat
Upstream geneAlk, Ypel5, Lbh
Downstream geneLOC668709, Capn13, LOC100043666, Galnt14, Ehd3, LOC240160, Xdh, Srd5a2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-053J17.bB6Ng01-053J17.g
ACCDH876607DH876608
length890864
definitionDH876607|Mus musculus domesticus DNA, BAC clone: B6Ng01-053J17, 5' end.DH876608|Mus musculus domesticus DNA, BAC clone: B6Ng01-053J17, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(73,468,591 - 73,469,167)(73,328,585 - 73,329,448)
sequence
gaattccaggacatccagaaatacacagaaaaaccctgtctcaaaaaaat
aaaaacaaaacaaaaacaaacaaacaaaaaaactcactgagaaagcaatc
aggaaaacaatctcactcacaatagtgtcaaagaagaaaacattcgaagc
ataaacctacccaaagacataaaaggcctctaccataaaaattataaaac
acttaagaactatattgaagacactaaaaagtaagaagatttcctgtttg
caaattggcagatttattctgtgaaaacagccaacggacggttaatactg
ttaacttgacaggatctagaatcacctaggaaagcagcctttgtccatgt
ctctatggactacctagattgggtgagctgaagtgggagaccacctaacc
gtaggcagcaccatcctgtgggctgcggtgttagactgcatagaggataa
agcaggtgagctccaggaggcatcactgtgtgcttcatgactgacacaat
gtggcagttgctggcactcctgtcacctgccttctgtaacatgatcagct
gtgtcccgtgactataagccacagcactctcctccttaacctgcttctgc
gagctgttttgtccaccatgaaaagtaactcatacaacatgtatggaaat
acaaaaatcaaattccttatcttaagatgcatgagcatagtacatcctaa
cctctgaaagctacaaatgttatgtagaaagaaaagaaagaaaagactgt
aaatatggttatgttatgtattttacaatgggaagttattttgaaatatt
aagggccaaaatacaatcgcatacaacatatgcttttaagaggaagacaa
agggaagttgcacagaggaaaggagaaggagctgtgattc
gaattccacttaaattgatctgggtctgaatgaagatgatggtaggaaac
gtggcccaataactttgatatggaaacacttcactatacttgtcagggaa
tgaattctttaattacttgggaatgcaaagagatctattataatacttta
tgttttgaaatacctttgtctcaggagtaataacttcgtcttggtgattt
gtggtttgacagctgatttcatgtgtattaacacatccactctcacacca
ggtagagaaagttaaggacttgctcaaacctccggctagcatccagcgga
gcctaaaatcatgtgcacaaggtggaactgagaactctggtaccaaagct
ctcactaccacagtccttatctacaccaagaaaagggacctggagagggt
tggctgaaattgttggccatggatttcagaggaaatattgttagccaatc
actctgacgcccaattttcacagtactaaaggataaatgagaccttatgt
taaaacagtgctcctgagtgtgttcaagatcagattagcatttggagaaa
tagatttgagtgagtaatccccgactggtgtgagtgagtcccatccaagg
ccctgactcacgtgaggggaccccatctaagccattggaggcagaacatt
ggacactttcccttcactttcaactaagatgcctatcatttcctccttca
gactttagaattcctcagaccgaatcagagcgctagcatccctggctctg
cagctcacagactgtaagtgatgagactcagcttctatactcccataaga
caccccccccccaaagtgggaagatgttgaaagccagaggacagggagtt
tgctttgagactgt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr17_73468591_73469167
seq2: B6Ng01-053J17.b_47_623 (reverse)

seq1  GTGCTGTGGCTTATAGTCACGGGACACAGCTGATCATGTTACAGAAGGCA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGCTGTGGCTTATAGTCACGGGACACAGCTGATCATGTTACAGAAGGCA  50

seq1  GGTGACAGGAGTGCCAGCAACTGCCACATTGTGTCAGTCATGAAGCACAC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTGACAGGAGTGCCAGCAACTGCCACATTGTGTCAGTCATGAAGCACAC  100

seq1  AGTGATGCCTCCTGGAGCTCACCTGCTTTATCCTCTATGCAGTCTAACAC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTGATGCCTCCTGGAGCTCACCTGCTTTATCCTCTATGCAGTCTAACAC  150

seq1  CGCAGCCCACAGGATGGTGCTGCCTACGGTTAGGTGGTCTCCCACTTCAG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGCAGCCCACAGGATGGTGCTGCCTACGGTTAGGTGGTCTCCCACTTCAG  200

seq1  CTCACCCAATCTAGGTAGTCCATAGAGACATGGACAAAGGCTGCTTTCCT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCACCCAATCTAGGTAGTCCATAGAGACATGGACAAAGGCTGCTTTCCT  250

seq1  AGGTGATTCTAGATCCTGTCAAGTTAACAGTATTAACCGTCCGTTGGCTG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGTGATTCTAGATCCTGTCAAGTTAACAGTATTAACCGTCCGTTGGCTG  300

seq1  TTTTCACAGAATAAATCTGCCAATTTGCAAACAGGAAATCTTCTTACTTT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTCACAGAATAAATCTGCCAATTTGCAAACAGGAAATCTTCTTACTTT  350

seq1  TTAGTGTCTTCAATATAGTTCTTAAGTGTTTTATAATTTTTATGGTAGAG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAGTGTCTTCAATATAGTTCTTAAGTGTTTTATAATTTTTATGGTAGAG  400

seq1  GCCTTTTATGTCTTTGGGTAGGTTTATGCTTCGAATGTTTTCTTCTTTGA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCTTTTATGTCTTTGGGTAGGTTTATGCTTCGAATGTTTTCTTCTTTGA  450

seq1  CACTATTGTGAGTGAGATTGTTTTCCTGATTGCTTTCTCAGTGAGTTTTT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACTATTGTGAGTGAGATTGTTTTCCTGATTGCTTTCTCAGTGAGTTTTT  500

seq1  TTGTTTGTTTGTTTTTGTTTTGTTTTTATTTTTTTGAGACAGGGTTTTTC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTTTGTTTGTTTTTGTTTTGTTTTTATTTTTTTGAGACAGGGTTTTTC  550

seq1  TGTGTATTTCTGGATGTCCTGGAATTC  577
      |||||||||||||||||||||||||||
seq2  TGTGTATTTCTGGATGTCCTGGAATTC  577

seq1: chr17_73328585_73329448
seq2: B6Ng01-053J17.g_69_932

seq1  GAATTCCACTTAAATTGATCTGGGTCTGAATGAAGATGATGGTAGGAAAC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCACTTAAATTGATCTGGGTCTGAATGAAGATGATGGTAGGAAAC  50

seq1  GTGGCCCAATAACTTTGATATGGAAACACTTCACTATACTTGTCAGGGAA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGGCCCAATAACTTTGATATGGAAACACTTCACTATACTTGTCAGGGAA  100

seq1  TGAATTCTTTAATTACTTGGGAATGCAAAGAGATCTATTATAATACTTTA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAATTCTTTAATTACTTGGGAATGCAAAGAGATCTATTATAATACTTTA  150

seq1  TGTTTTGAAATACCTTTGTCTCAGGAGTAATAACTTCGTCTTGGTGATTT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTTTGAAATACCTTTGTCTCAGGAGTAATAACTTCGTCTTGGTGATTT  200

seq1  GTGGTTTGACAGCTGATTTCATGTGTATTAACACATCCACTCTCACACCA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGGTTTGACAGCTGATTTCATGTGTATTAACACATCCACTCTCACACCA  250

seq1  GGTAGAGAAAGTTAAGGACTTGCTCAAACCTCCGGCTAGCATCCAGCGGA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTAGAGAAAGTTAAGGACTTGCTCAAACCTCCGGCTAGCATCCAGCGGA  300

seq1  GCCTAAAATCATGTGCACAAGGTGGAACTGAGAACTCTGGTACCAAAGCT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCTAAAATCATGTGCACAAGGTGGAACTGAGAACTCTGGTACCAAAGCT  350

seq1  CTCACTACCACAGTCCTTATCTACACCAAGAAAAGGGACCTGGAGAGGGT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCACTACCACAGTCCTTATCTACACCAAGAAAAGGGACCTGGAGAGGGT  400

seq1  TGGCTGAAATTGTTGGCCATGGATTTCAGAGGAAATATTGTTAGCCAATC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGCTGAAATTGTTGGCCATGGATTTCAGAGGAAATATTGTTAGCCAATC  450

seq1  ACTCTGACGCCCAATTTTCACAGTACTAAAGGATAAATGAGACCTTATGT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTCTGACGCCCAATTTTCACAGTACTAAAGGATAAATGAGACCTTATGT  500

seq1  TAAAACAGTGCTCCTGAGTGTGTTCAAGATCAGATTAGCATTTGGAGAAA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAAACAGTGCTCCTGAGTGTGTTCAAGATCAGATTAGCATTTGGAGAAA  550

seq1  TAGATTTGAGTGAGTAACCCCCGACTGGTGTGAGTGAGTCCCATCCAAGG  600
      ||||||||||||||||| ||||||||||||||||||||||||||||||||
seq2  TAGATTTGAGTGAGTAATCCCCGACTGGTGTGAGTGAGTCCCATCCAAGG  600

seq1  CCCTGACTCACGTGAGGGGACCCCATCTAAGCCATTGGAGGCAGAACATT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCTGACTCACGTGAGGGGACCCCATCTAAGCCATTGGAGGCAGAACATT  650

seq1  GGACAC-TTCCCTTCAC-TTCAACTAAGATGCCTATCATTTCCTCCCTTC  698
      |||||| |||||||||| |||||||||||||||||||||||||| |||||
seq2  GGACACTTTCCCTTCACTTTCAACTAAGATGCCTATCATTTCCT-CCTTC  699

seq1  AGAC-TTAGAATTCCTCAGACCGAATCAGAGCGCTAGCATCCCTGGCTCT  747
      |||| |||||||||||||||||||||||||||||||||||||||||||||
seq2  AGACTTTAGAATTCCTCAGACCGAATCAGAGCGCTAGCATCCCTGGCTCT  749

seq1  GCAGCTCACAGACTGTAAGTGATGAGACTCAGCTTCTATACTCCCATAAG  797
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAGCTCACAGACTGTAAGTGATGAGACTCAGCTTCTATACTCCCATAAG  799

seq1  ACACCCCCCCCCCAAAGTGGGAAGATTGTTGAAAGCCAGAGGACCAGGGA  847
      ||||||||||||||||||||||||| ||||||||||||||||| ||||||
seq2  ACACCCCCCCCCCAAAGTGGGAAGA-TGTTGAAAGCCAGAGGA-CAGGGA  847

seq1  GTTTGCCTTGAGACTGT  864
      |||||| ||||||||||
seq2  GTTTGCTTTGAGACTGT  864