BAC Information

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BAC

Clone NameB6Ng01-053L01
Chromosome17 (Build37)
Map Location 44,712,051 - 44,892,817
singlet/doubletdoublet
Overlap geneRunx2
Upstream genePla2g7, Tdrd6, Slc25a27, Cyp39a1, Dscr1l1, Enpp5, Enpp4, Clic5
Downstream geneSupt3h, 4930564C03Rik, EG210562, EG668314, Cdc5l, Spats1, EG668319, Aars2, Tcte1, Gm323, Nfkbie, Slc35b2, Hsp90ab1, Slc29a1, EG653016, Capn11, Tmem63b, Mrpl14
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-053L01.bB6Ng01-053L01.g
ACCDH876666DH876667
length881867
definitionDH876666|Mus musculus domesticus DNA, BAC clone: B6Ng01-053L01, 5' end.DH876667|Mus musculus domesticus DNA, BAC clone: B6Ng01-053L01, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(44,712,051 - 44,712,935)(44,891,959 - 44,892,817)
sequence
gaattcttaaggagagcaagggaaattaaaaataagcaacaacccagaat
actcagaaaaagtacctttctaagaaaggagaaggaatgaaagactgaat
ttgttcgttttacaaagaaaatgaccaaggaaggtagacctgaaatgtaa
ataaagcagtgggcagaggcaaagcagcatctggaggaagccaaacagta
gctgtgcctagctttaactatattagtatattacagccttattaattagc
taaggaattagttaaggaaattaattaattaagaaattaaatatatacat
atatattaaattatatcctaatcataatggtataggagttattttattga
tgatagtaactaaaatctaaagactaactcacctaatactaaaatgcaaa
gaagcaatcttgtcttttgagcacacacacacacacacacacacacacac
acacacacacaggtacacgcttggctcctcctctgtgtgggagtgtgtct
acatgagtgcagattcctgcaatgccagaaaatgtccacgatcctccaga
gctggagctgctcttgggatgtgcttaacgaggctgctggaaactgaact
ccagatctctgcaagagcatcaagccccagcctgtgtattttacaaccaa
gagaaaatccaagttagtagaaaaccgttacataaaacttacagatgggc
tatcacaatcaaaaaaagctgtgcttcttgcatcagtcagaaaacattca
agcttttctttttaattatgctaaactaaacataaagattaaaattgtag
ggaccagtaaaagaaactaaactcatgaggtagagggattagaccagaag
tgaagtgaaaggacataacaactaatgcaga
gaattccaggacagccagggctacacagagaaaccctgtctcaggaaaaa
caataaataaataaataaataaataaataaataaaaacattgtcttggct
cctggcaaattttgcaaacagcctcataccaatcttgaagttgcacttca
acactttcgaaagatatgtcagtgtcagaatgcctcccagagaaactcat
ttgaagctcatatttagaaaatgaaggcgagcgagagatcctcaagacac
cattatttccgtacatattgaccagaaccgcatgtgtttcttaattgctc
ttgtagaagtcttatagaacatgttataaaatgccaaaacctcagttata
aaaggcttttaaagtctaggctatgacaaatatttttaaaatagctactt
aataattcctttttgggggtaaacgctggagaacgagacactttaaaagc
aatagaatttaaagggataatccatattcaccgcatatttttcttcctaa
acttataagactaatatgtgtgctgggaatacagcttatcctagtacaca
taaggtcctgggttcaatccccagcactctagcttagtaaacaaaccaca
gggacatggttagagtaagtggacatggttagattttaatgagcactttt
accatttcattaagtctaccattaacacaaaaaacaggattggggatttc
tattttagcttcagcagctaatcaatttttaattaacccatagctgcttt
gtcatttttgattttataagtagtagaggtctgttttaacccagcattcc
cagtggtgagggttcatgcccattagctagaatgccctcgctgtgtctga
ttatcttatcacactga
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr17_44712051_44712935
seq2: B6Ng01-053L01.b_43_923

seq1  GAATTCTTAAGGAGAGCAAGGGAAATTAAAAATAAGCAACAACCCAGAAT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTTAAGGAGAGCAAGGGAAATTAAAAATAAGCAACAACCCAGAAT  50

seq1  ACTCAGAAAAAGTACCTTTCTAAGAAAGGAGAAGGAATGAAAGACTGAAT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTCAGAAAAAGTACCTTTCTAAGAAAGGAGAAGGAATGAAAGACTGAAT  100

seq1  TTGTTCGTTTTACAAAGAAAATGACCAAGGAAGGTAGACCTGAAATGTAA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTTCGTTTTACAAAGAAAATGACCAAGGAAGGTAGACCTGAAATGTAA  150

seq1  ATAAAGCAGTGGGCAGAGGCAAAGCAGCATCTGGAGGAAGCCAAACAGTA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAAAGCAGTGGGCAGAGGCAAAGCAGCATCTGGAGGAAGCCAAACAGTA  200

seq1  GCTGTGCCTAGCTTTAACTATATTAGTATATTACAGCCTTATTAATTAGC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTGTGCCTAGCTTTAACTATATTAGTATATTACAGCCTTATTAATTAGC  250

seq1  TAAGGAATTAGTTAAGGAAATTAATTAATTAAGAAATTAAATATATACAT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAGGAATTAGTTAAGGAAATTAATTAATTAAGAAATTAAATATATACAT  300

seq1  ATATATTAAATTATATCCTAATCATAATGGTATAGGAGTTATTTTATTGA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATATTAAATTATATCCTAATCATAATGGTATAGGAGTTATTTTATTGA  350

seq1  TGATAGTAACTAAAATCTAAAGACTAACTCACCTAATACTAAAATGCAAA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGATAGTAACTAAAATCTAAAGACTAACTCACCTAATACTAAAATGCAAA  400

seq1  GAAGCAATCTTGTCTTTTGAGCACACACACACACACACACACACACACAC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGCAATCTTGTCTTTTGAGCACACACACACACACACACACACACACAC  450

seq1  ACACACACACAGGTACACGCTTGGCTCCTCCTCTGTGTGGGAGTGTGTCT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACACACACAGGTACACGCTTGGCTCCTCCTCTGTGTGGGAGTGTGTCT  500

seq1  ACATGAGTGCAGATTCCTGCAATGCCAGAAAATGTCCACGATCCTCCAGA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATGAGTGCAGATTCCTGCAATGCCAGAAAATGTCCACGATCCTCCAGA  550

seq1  GCTGGAGCTGCTCTTGGGATGTGCTTAACGAGGCTGCTGGAAACTGAACT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTGGAGCTGCTCTTGGGATGTGCTTAACGAGGCTGCTGGAAACTGAACT  600

seq1  CCAGATCTCTGCAAGAGCATCAAGCCCCAGCCTGTGTATTTTACAACCAA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGATCTCTGCAAGAGCATCAAGCCCCAGCCTGTGTATTTTACAACCAA  650

seq1  GAGAAAATCCAAGTTAGTAGAAAACCGTTACATAAAACTTACAGATGGGC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGAAAATCCAAGTTAGTAGAAAACCGTTACATAAAACTTACAGATGGGC  700

seq1  TATCACAATC-AAGAAAGCTGTGCTTCTTGCATCAGTCAAGAAAACATTC  749
      |||||||||| || |||||||||||||||||||||||| |||||||||||
seq2  TATCACAATCAAAAAAAGCTGTGCTTCTTGCATCAGTC-AGAAAACATTC  749

seq1  AAGC-TTTCATTTTAATTATGCTAAACTAAACATAAAAGATTAAAATTGT  798
      |||| |||| |||||||||||||||||||||||| |||||||||||||||
seq2  AAGCTTTTCTTTTTAATTATGCTAAACTAAACAT-AAAGATTAAAATTGT  798

seq1  AGGTGACCAGTAAAAGAAACTAGAACTCATGAGGTAGAGGGAATTAGAAC  848
      ||| |||||||||||||||||| |||||||||||||||||| |||||| |
seq2  AGG-GACCAGTAAAAGAAACTA-AACTCATGAGGTAGAGGG-ATTAGACC  845

seq1  AGAAGGTGAAGTGAAAGAACATAACAACTAATGCAGA  885
      |||| |||||||||||| |||||||||||||||||||
seq2  AGAA-GTGAAGTGAAAGGACATAACAACTAATGCAGA  881

seq1: chr17_44891959_44892817
seq2: B6Ng01-053L01.g_71_937 (reverse)

seq1  TCAGTGTGATAAGATAATCAGACACAGCGAGGGCATTCTAGCTACT-GGC  49
      |||||||||||||||||||||||||||||||||||||||||||| | |||
seq2  TCAGTGTGATAAGATAATCAGACACAGCGAGGGCATTCTAGCTAATGGGC  50

seq1  ATGAACCCTCACCACT-GGAATGCTGGGTT-AAACAGACCTCTACTAACT  97
      |||||||||||||||| ||||||||||||| ||||||||||||||||  |
seq2  ATGAACCCTCACCACTGGGAATGCTGGGTTAAAACAGACCTCTACTACTT  100

seq1  AATAAATC-AAAATGACAAAGCAGCTAT-GGTTAATT-AAAATTGATTAG  144
      |  ||||| ||||||||||||||||||| |||||||| ||||||||||||
seq2  ATAAAATCAAAAATGACAAAGCAGCTATGGGTTAATTAAAAATTGATTAG  150

seq1  CTGCTGAAGCT-AAATAGAAATCCCCAATCCTG-TTTTTGTGTTAATGGT  192
      ||||||||||| ||||||||||||||||||||| ||||||||||||||||
seq2  CTGCTGAAGCTAAAATAGAAATCCCCAATCCTGTTTTTTGTGTTAATGGT  200

seq1  AGACTTAATGAAATGGTAAAAGTGCTCATTAAAATCTAACCATGTCCACT  242
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGACTTAATGAAATGGTAAAAGTGCTCATTAAAATCTAACCATGTCCACT  250

seq1  TACTCTAACCATGTCCCTGTGGTTTGTTTACTAAGCTAGAGTGCTGGGGA  292
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACTCTAACCATGTCCCTGTGGTTTGTTTACTAAGCTAGAGTGCTGGGGA  300

seq1  TTGAACCCAGGACCTTATGTGTACTAGGATAAGCTGTATTCCCAGCACAC  342
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGAACCCAGGACCTTATGTGTACTAGGATAAGCTGTATTCCCAGCACAC  350

seq1  ATATTAGTCTTATAAGTTTAGGAAGAAAAATATGCGGTGAATATGGATTA  392
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATTAGTCTTATAAGTTTAGGAAGAAAAATATGCGGTGAATATGGATTA  400

seq1  TCCCTTTAAATTCTATTGCTTTTAAAGTGTCTCGTTCTCCAGCGTTTACC  442
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCCTTTAAATTCTATTGCTTTTAAAGTGTCTCGTTCTCCAGCGTTTACC  450

seq1  CCCAAAAAGGAATTATTAAGTAGCTATTTTAAAAATATTTGTCATAGCCT  492
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCAAAAAGGAATTATTAAGTAGCTATTTTAAAAATATTTGTCATAGCCT  500

seq1  AGACTTTAAAAGCCTTTTATAACTGAGGTTTTGGCATTTTATAACATGTT  542
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGACTTTAAAAGCCTTTTATAACTGAGGTTTTGGCATTTTATAACATGTT  550

seq1  CTATAAGACTTCTACAAGAGCAATTAAGAAACACATGCGGTTCTGGTCAA  592
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTATAAGACTTCTACAAGAGCAATTAAGAAACACATGCGGTTCTGGTCAA  600

seq1  TATGTACGGAAATAATGGTGTCTTGAGGATCTCTCGCTCGCCTTCATTTT  642
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATGTACGGAAATAATGGTGTCTTGAGGATCTCTCGCTCGCCTTCATTTT  650

seq1  CTAAATATGAGCTTCAAATGAGTTTCTCTGGGAGGCATTCTGACACTGAC  692
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAAATATGAGCTTCAAATGAGTTTCTCTGGGAGGCATTCTGACACTGAC  700

seq1  ATATCTTTCGAAAGTGTTGAAGTGCAACTTCAAGATTGGTATGAGGCTGT  742
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATCTTTCGAAAGTGTTGAAGTGCAACTTCAAGATTGGTATGAGGCTGT  750

seq1  TTGCAAAATTTGCCAGGAGCCAAGACAATGTTTTTATTTATTTATTTATT  792
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGCAAAATTTGCCAGGAGCCAAGACAATGTTTTTATTTATTTATTTATT  800

seq1  TATTTATTTATTTATTGTTTTTCCTGAGACAGGGTTTCTCTGTGTAGCCC  842
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTTATTTATTTATTGTTTTTCCTGAGACAGGGTTTCTCTGTGTAGCCC  850

seq1  TGGCTGTCCTGGAATTC  859
      |||||||||||||||||
seq2  TGGCTGTCCTGGAATTC  867