BAC Information

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BAC

Clone NameB6Ng01-053N10
Chromosome17 (Build37)
Map Location 17,754,063 - 17,905,468
singlet/doubletdoublet
Overlap geneLnpep, EG665140, LOC100041519, EG626942
Upstream geneLOC100041407, LOC665072, EG383211, LOC626785, LOC665085, BC002059, BC018101, Zfp97, EG382161, LOC676238, EG626854, LOC100041965, Riok2, Lix1, LOC383297
Downstream gene4930546H06Rik, Has1, Fpr1, Fpr-rs2, LOC665183, LOC670250, EG665187, LOC546683, Fprl1, LOC627060, Fpr-rs4, EG637021, EG665210, Vmn2r92, EG665227, EG627132, LOC100041612, Vmn2r95, Vmn2r-ps114, EG433070, Vmn2r-ps115, Vmn2r-ps117
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-053N10.bB6Ng01-053N10.g
ACCDH876762DH876763
length1,0261,172
definitionDH876762|Mus musculus domesticus DNA, BAC clone: B6Ng01-053N10, 5' end.DH876763|Mus musculus domesticus DNA, BAC clone: B6Ng01-053N10, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(17,754,063 - 17,755,090)(17,904,277 - 17,905,468)
sequence
gaattcttctgtgtttaatacttttgtatctagtattttaatatttccaa
aattgggaattacataaatgtgcgttcatctgcaatgaacaactagagtg
gagccaagccaatcacgtcctaataaacttttgcttattctacttcaagt
ctcttttatttagactcagtgatttttctgcacacgacctccaactgaaa
aaggcatcaaaccgctccatactcaccttccaagtaaagctgctgcataa
tacaatggactacttctcaccccactgagaagcacccagtcctgtacgct
caacctaaacggccttccccatccagccacccactctaaacactgaagag
acactaccaaggatcccaagggctggcacagcacccagtgcaaagagcag
aaaattactgctactaagggtatagatagactggcccaagcttcgatata
ggatcttggtaaatctaaacagaccagttcttcctaccaagtctcaaggg
ccacaggaacttgccctaagcaaaccatggaacatatttttggtaaccga
aactagataagcattatacagtcttcatatcactgtaccaatacctactt
aaagaatagtctcttaggcacttagctatattcccagcctctactactaa
tctctacgcaagttttctcttattcttaggatgctataatactttgtgga
tatgaatgttctgatagttgttttaaaatcttccaaagtaagtttcagct
taaagaaatatcaagctcccagtagtggggattactcagtgagtaaaacc
atttgccgtacaagcatgaggacctgagttgggactcatcagaaccactc
ctccctctgaaaaccctgggcatggacacatgtgcctctaaccctgcagg
agggaaggcaggagagtccccaggatttgttgctgcagcctagccataaa
acatactgagctccaggttcaagaagagagactatcttcaagggattatg
cagaggctgaaaccaggcaattatac
gaattcagtgttctgacttctgctgcatgttgtggtacttcatatttaga
ggtgcagtgtactaggtaagctggtcaccagatcacgtctgaatttatat
tacatggtagaatctactctgaatttactgtttcacctctgcagctgcag
gatgcactgaaaactcactgaattttcgcaagcaggcaccctgggtctga
acaaagcatcacttctcttgcagtcactatcaggtttaatgccagagacc
taacctgactgaggaggacttatatcaaacatacatgtctctgtgggacc
acagaatcctgaactaatacactttatagagttgaggcagatagcagagg
gataacatgaaaaaaaaatctatttactgaatacagcgcctgggaaaaac
tacaatgcgacactacaaagataaatgtgacagaaatgctacattcacat
ggaagatcaatgttttccaggtggatgcagtaatcaatataagaatctga
gaactgcagatactacaatttatggtggcctcacatacttcactgctata
aagaaaagccaacccagtgctgtcaaaaagctgtcaaagagagcacagga
ctcaggtttgaagccatggagcaagaatctcaagattttagccagattta
aaaagcttcattgttcagagaaaggcttctttactatgatacttagaaca
atggatagctaccagaaagagttacactagaaccttaattcttactgtgc
accaataaatcacaaatgtgtaagagacataactgagatgctagaactct
tatacaaagtagtgcttggaaactcaaagtaaaaaagtgttcgtatagta
cagtcttagacaacgatatgtcaggagatttcagtcactcatgaataata
gcacgggaaagatgaagttaaaaccatcctgcatatctaaacattcagtc
accttcagctcccactatgaaaacagatatagatatcaccaaacagagct
atgcatgatttctatcatattgaatgcttcatagttgagaaacaggccag
cccaacctgctattcatactttacaacagagccaggagcagtttaggaat
ggtggcaggtggcgtggctacatgcactgaagtttgagttcatcaagaac
ttgatctagtattaaggatcag
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr17_17754063_17755090
seq2: B6Ng01-053N10.b_42_1067

seq1  GAATTCTTCTGTGTTTAATACTTTTGTATCTAGTATTTTAATATTTCCAA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTTCTGTGTTTAATACTTTTGTATCTAGTATTTTAATATTTCCAA  50

seq1  AATTGGGAATTACATAAATGTGCGTTCATCTGCAATGAACAACTAGAGTG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTGGGAATTACATAAATGTGCGTTCATCTGCAATGAACAACTAGAGTG  100

seq1  GAGCCAAGCCAATCACGTCCTAATAAACTTTTGCTTATTCTACTTCAAGT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGCCAAGCCAATCACGTCCTAATAAACTTTTGCTTATTCTACTTCAAGT  150

seq1  CTCTTTTATTTAGACTCAGTGATTTTTCTGCACACGACCTCCAACTGAAA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTTTTATTTAGACTCAGTGATTTTTCTGCACACGACCTCCAACTGAAA  200

seq1  AAGGCATCAAACCGCTCCATACTCACCTTCCAAGTAAAGCTGCTGCATAA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGCATCAAACCGCTCCATACTCACCTTCCAAGTAAAGCTGCTGCATAA  250

seq1  TACAATGGACTACTTCTCACCCCACTGAGAAGCACCCAGTCCTGTACGCT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACAATGGACTACTTCTCACCCCACTGAGAAGCACCCAGTCCTGTACGCT  300

seq1  CAACCTAAACGGCCTTCCCCATCCAGCCACCCACTCTAAACACTGAAGAG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAACCTAAACGGCCTTCCCCATCCAGCCACCCACTCTAAACACTGAAGAG  350

seq1  ACACTACCAAGGATCCCAAGGGCTGGCACAGCACCCAGTGCAAAGAGCAG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACTACCAAGGATCCCAAGGGCTGGCACAGCACCCAGTGCAAAGAGCAG  400

seq1  AAAATTACTGCTACTAAGGGTATAGATAGACTGGCCCAAGCTTCGATATA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAATTACTGCTACTAAGGGTATAGATAGACTGGCCCAAGCTTCGATATA  450

seq1  GGATCTTGGTAAATCTAAACAGACCAGTTCTTCCTACCAAGTCTCAAGGG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGATCTTGGTAAATCTAAACAGACCAGTTCTTCCTACCAAGTCTCAAGGG  500

seq1  CCACAGGAACTTGCCCTAAGCAAACCATGGAACATATTTTTGGTAACCGA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCACAGGAACTTGCCCTAAGCAAACCATGGAACATATTTTTGGTAACCGA  550

seq1  AACTAGATAAGCATTATACAGTCTTCATATCACTGTACCAATACCTACTT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTAGATAAGCATTATACAGTCTTCATATCACTGTACCAATACCTACTT  600

seq1  AAAGAATAGTCTCTTAGGCACTTAGCTATATTCCCAGCCTCTACTACTAA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGAATAGTCTCTTAGGCACTTAGCTATATTCCCAGCCTCTACTACTAA  650

seq1  TCTCTACGCAAGTTTTCTCTTATTCTTAGGATGCTATAATACTTTGTGGA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCTACGCAAGTTTTCTCTTATTCTTAGGATGCTATAATACTTTGTGGA  700

seq1  TATGAATGTTCTGATAGTTGTTTTAAAATCTTCCAAAGTAAGTTTCAGCT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATGAATGTTCTGATAGTTGTTTTAAAATCTTCCAAAGTAAGTTTCAGCT  750

seq1  TAAAGAAATATCAAGCTCCCAGTAGTGGGGATTACTCAGTGAGTAAAACC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAAGAAATATCAAGCTCCCAGTAGTGGGGATTACTCAGTGAGTAAAACC  800

seq1  ATTTGCCGTACAAGCATGAGGACCTGAGTT-GGACTCATCAGAACCACTC  849
      |||||||||||||||||||||||||||||| |||||||||||||||||||
seq2  ATTTGCCGTACAAGCATGAGGACCTGAGTTGGGACTCATCAGAACCACTC  850

seq1  CTCCCTCTGAAAACCCTGGGCATGGACACATGTGCCTCTAACCCTGCAGG  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCCCTCTGAAAACCCTGGGCATGGACACATGTGCCTCTAACCCTGCAGG  900

seq1  AGGGAAGGCAGGAGAGTCCCCAGGATTTGTTGGCTGCCAGCCTAGCCATA  949
      ||||||||||||||||||||||||||||||| |||| |||||||||||||
seq2  AGGGAAGGCAGGAGAGTCCCCAGGATTTGTT-GCTG-CAGCCTAGCCATA  948

seq1  AAACATACTGAGCTCCAGGTTCAAGAAGAGAGACAATC-TCAAGGGAATT  998
      |||||||||||||||||||||||||||||||||| ||| ||||||||  |
seq2  AAACATACTGAGCTCCAGGTTCAAGAAGAGAGACTATCTTCAAGGGA--T  996

seq1  AAGGCAGAGGCTGAGACCAGGCAATAATAC  1028
       | ||||||||||| |||||||||| ||||
seq2  TATGCAGAGGCTGAAACCAGGCAATTATAC  1026

seq1: chr17_17904277_17905468
seq2: B6Ng01-053N10.g_69_1240 (reverse)

seq1  CTGATCCCTTAGATACTAGATCAAGTCTTTGTATGAACTACAAACTTCAG  50
      ||||| ||||| ||||||||||||||  ||| ||||||| ||||||||||
seq2  CTGAT-CCTTA-ATACTAGATCAAGTTCTTG-ATGAACT-CAAACTTCAG  46

seq1  TGCATGTTAGCCACGACAACCTTGCAACATTTCCTAAAACTGCTCCTGTG  100
      |||||| |||||||| ||  | ||| ||  ||||| |||||||||||| |
seq2  TGCATG-TAGCCACGCCA--CCTGCCACCATTCCT-AAACTGCTCCTG-G  91

seq1  CTTCTGGTTGTATAGTATGGATATGCAGTGTGGCTTGCCCTGTTTCTCAA  150
      | ||| |||||| |||||| ||| ||||  |||  || ||||||||||||
seq2  C-TCT-GTTGTAAAGTATGAATA-GCAGGTTGGGCTGGCCTGTTTCTCAA  138

seq1  CTATGAAGCATTC-ATATGATAGAAATCATGCATAGCCTTCTTGTTTTGG  199
      ||||||||||||| |||||||||||||||||||||||  |||   |||||
seq2  CTATGAAGCATTCAATATGATAGAAATCATGCATAGC--TCT--GTTTGG  184

seq1  TGATATTCTATATCTGTTTTCATAGTGGGAGCTGAAGGTGACTTGAATGT  249
      ||||| |||||||||||||||||||||||||||||||||||| |||||| 
seq2  TGATA-TCTATATCTGTTTTCATAGTGGGAGCTGAAGGTGAC-TGAATG-  231

seq1  TTTAGATATGCAGGATGGTTTTAACTTCATCTTTCCCGTGCTATTATTCA  299
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTAGATATGCAGGATGGTTTTAACTTCATCTTTCCCGTGCTATTATTCA  281

seq1  TGAGTGACTGAAATTCTCCTGACAATATCGTTGTCTAAGACTGTACTATA  349
      ||||||||||||| ||||||||| ||||||||||||||||||||||||||
seq2  TGAGTGACTGAAA-TCTCCTGAC-ATATCGTTGTCTAAGACTGTACTATA  329

seq1  CGAACACTTTTTTACTTTGAGTTTCCAAGCACTACTTTGTATAAGAGTTC  399
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGAACACTTTTTTACTTTGAGTTTCCAAGCACTACTTTGTATAAGAGTTC  379

seq1  TAGCATCTCAGTTATGTCTCTTACACATTTGTGATTTATTGGTGCACAGT  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGCATCTCAGTTATGTCTCTTACACATTTGTGATTTATTGGTGCACAGT  429

seq1  AAGAATTAAGGTTCTAGTGTAACTCTTTCTGGTAGCTATCCATTGTTCTA  499
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGAATTAAGGTTCTAGTGTAACTCTTTCTGGTAGCTATCCATTGTTCTA  479

seq1  AGTATCATAGTAAAGAAGCCTTTCTCTGAACAATGAAGCTTTTTAAATCT  549
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTATCATAGTAAAGAAGCCTTTCTCTGAACAATGAAGCTTTTTAAATCT  529

seq1  GGCTAAAATCTTGAGATTCTTGCTCCATGGCTTCAAACCTGAGTCCTGTG  599
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCTAAAATCTTGAGATTCTTGCTCCATGGCTTCAAACCTGAGTCCTGTG  579

seq1  CTCTCTTTGACAGCTTTTTGACAGCACTGGGTTGGCTTTTCTTTATAGCA  649
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTCTTTGACAGCTTTTTGACAGCACTGGGTTGGCTTTTCTTTATAGCA  629

seq1  GTGAAGTATGTGAGGCCACCATAAATTGTAGTATCTGCAGTTCTCAGATT  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGAAGTATGTGAGGCCACCATAAATTGTAGTATCTGCAGTTCTCAGATT  679

seq1  CTTATATTGATTACTGCATCCACCTGGAAAACATTGATCTTCCATGTGAA  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTATATTGATTACTGCATCCACCTGGAAAACATTGATCTTCCATGTGAA  729

seq1  TGTAGCATTTCTGTCACATTTATCTTTGTAGTGTCGCATTGTAGTTTTTC  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTAGCATTTCTGTCACATTTATCTTTGTAGTGTCGCATTGTAGTTTTTC  779

seq1  CCAGGCGCTGTATTCAGTAAATAGATTTTTTTTTCATGTTATCCCTCTGC  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGGCGCTGTATTCAGTAAATAGATTTTTTTTTCATGTTATCCCTCTGC  829

seq1  TATCTGCCTCAACTCTATAAAGTGTATTAGTTCAGGATTCTGTGGTCCCA  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATCTGCCTCAACTCTATAAAGTGTATTAGTTCAGGATTCTGTGGTCCCA  879

seq1  CAGAGACATGTATGTTTGATATAAGTCCTCCTCAGTCAGGTTAGGTCTCT  949
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGAGACATGTATGTTTGATATAAGTCCTCCTCAGTCAGGTTAGGTCTCT  929

seq1  GGCATTAAACCTGATAGTGACTGCAAGAGAAGTGATGCTTTGTTCAGACC  999
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCATTAAACCTGATAGTGACTGCAAGAGAAGTGATGCTTTGTTCAGACC  979

seq1  CAGGGTGCCTGCTTGCGAAAATTCAGTGAGTTTTCAGTGCATCCTGCAGC  1049
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGGTGCCTGCTTGCGAAAATTCAGTGAGTTTTCAGTGCATCCTGCAGC  1029

seq1  TGCAGAGGTGAAACAGTAAATTCAGAGTAGATTCTACCATGTAATATAAA  1099
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCAGAGGTGAAACAGTAAATTCAGAGTAGATTCTACCATGTAATATAAA  1079

seq1  TTCAGACGTGATCTGGTGACCAGCTTACCTAGTACACTGCACCTCTAAAT  1149
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCAGACGTGATCTGGTGACCAGCTTACCTAGTACACTGCACCTCTAAAT  1129

seq1  ATGAAGTACCACAACATGCAGCAGAAGTCAGAACACTGAATTC  1192
      |||||||||||||||||||||||||||||||||||||||||||
seq2  ATGAAGTACCACAACATGCAGCAGAAGTCAGAACACTGAATTC  1172