BAC Information

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BAC

Clone NameB6Ng01-055K13
Chromosome17 (Build37)
Map Location 36,000,107 - 36,095,415
singlet/doubletdoublet
Overlap geneNrm, 2310014H01Rik, Dhx16, 2310061I04Rik, 2610110G12Rik, Mrps18b, LOC100043673, Ppp1r10, LOC100043674, LOC667766, Abcf1
Upstream geneC2, Zbtb12, Ehmt2, Slc44a4, Neu1, 1110038B12Rik, LOC667548, Hspa1b, Hspa1a, Hspa1l, Lsm2, Vars, D17H6S56E-3, Ng23, Msh5, Clic1, Ddah2, AU023871, G6b, Ly6g6c, Ly6g6d, Ly6g6e, Bat5, Ly6g5c, Ly6g5b, Csnk2b, Bat4, D17H6S53E, Apom, LOC100043621, Bat3, Bat2, Aif1, EG667612, Lst1, Ltb, Tnf, Lta, Nfkbil1, Atp6v1g2, Bat1a, H2-D1, H2-Q1, EG667636, LOC100043066, H2-Q2, EG625285, LOC436493, H2-Q8, EG667662, H2-Q6, H2-Q7, EG667669, H2-Q10, Pou5f1, Tcf19, Cchcr1, Psors1c2, Cdsn, LOC674169, 2300002M23Rik, LOC672682, Dpcr1, EG433102, Vars2, Gtf2h4, Ddr1, LOC100043663, Ier3, Flot1, Tubb5, Mdc1
Downstream genePrr3, Gna-rs1, H2-T24, H2-T23, H2-T22, EG547347, LOC667782, H2-Bl, EG667792, C920025E04Rik, H2-T10, LOC630294, LOC672718, ENSMUSG00000073403, LOC675325, LOC626268, EG667977, LOC625785, H2-T3, LOC100043127, EG667827, LOC435525, LOC677333, LOC100043134, LOC625881, Rpp21, Trim39, H2-M10.2, H2-M10.1, H2-M10.3, Gm318, LOC100043140, LOC674152, LOC383240, LOC224752, H2-M10.4, H2-M11, LOC667896, H2-M9, LOC620340, H2-M1, LOC667912, LOC100043158, LOC667915, H2-M10.5, H2-M10.6, Trim26, Trim15, Trim10, LOC100043164, Trim40, Trim31, Ppp1r11, Znrd1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-055K13.bB6Ng01-055K13.g
ACCDH878043DH878044
length1,130920
definitionDH878043|Mus musculus domesticus DNA, BAC clone: B6Ng01-055K13, 5' end.DH878044|Mus musculus domesticus DNA, BAC clone: B6Ng01-055K13, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(36,000,107 - 36,001,262)(36,094,492 - 36,095,415)
sequence
gaattcaggtcctcgggcttatacaacactacatagactgagccatctcc
ccagccctcccaccttgtttttaaaggtgaccctacctaaaaaccttccc
caggaggaggcctagagaagatggaagattgaaggaacagcagagtgaac
tgggaatggccttgacaagatcttgaaagcatcaggggcttgacatagag
cttccaaagatgtggttaggggaatgtcctagccatcttaactggccttt
tgtccctttccttcccaactccctcagatgcccgccacgggtggttggct
gccctgcaggaccggagcattcttgcctccttggcttgggatctatgtct
gctgctactgtttgtggtacagcacagccttatggcgactgaggcagtga
aggcgtggacatcccggtactttggcgtccttcagaggtcgctctatgtg
gcgtgcacagccctggccttgcaggtatgaggcctggccaagggagactg
gtggaaccgaaagaacatgcagagctcagcctccatccctcctgggcata
ttctcctatcagcaaagctgtatatatttgacattccccagcacactaag
agagtctcacctttgcaacattgttcatgttttattgcttcagctctgaa
ttcctcccgggttcttatcctacaacctccctaggcctcacaatagcact
tgtcttccagttggtattctcatggatgtttggcataggctagttgagtg
attattatccaccagcccccatcccgtccagtctccaaaaaatcctgtgt
agggatgggccatcttcatgtccttggtacccctcccagaaccctccaca
tggtaatattactgtttatacctgtcggaaagagtcctcgtagttatgtg
gggcagggagacactggtgtgcccagtctctcatctttcccagttggtga
tgcggtactggagactacaccagaggcccagtggtatgggaggctcgggc
tgaacatgggcactgggtacctctctctgcttgggctccacgtgtttctg
gctctcatctttagcatcttttgtcttgactacctgactgaatggctaag
cagggggaaatctacaccctacgtgagatc
gaattcaaggccagcctgggctgcagagtgagactgtgtccaaacaaaga
aaagagaagctgggctttgggcctctacctccatcctgctctcactcttg
cttgtccttgcagaccaacggggagatgaggaagaaccatcggctggtaa
gctggccttgggaaccgaggctggaggtcaggcaggaagcaggactcttg
actgaccactcccctctcctcttgggcagaaaatcggcttctttaaccag
cagtacgcagagcagctgcacatggaggagacgcccactgagtacctgca
gcggagcttcaatctgccctaccaggatgcccggaagtgcttgggccgct
ttggcctggagagccacgcccacaccatccagatctgcaaactctccggt
actgtcattctggggtgcttgaggaggtgacctcatcagctgttcctgga
agctgaaggggtttacagcacagatggggagcctccatgtcccaagtaca
tccatagggttggccttctgcaaggtgggtgacaggagtctcagtacggt
tcctttttgtgacaggtgggcagaaagcccgagtttgtgtttgcggagct
ggcctgtcgggagcctgatgtcctcatcttggtgagtgggcaatcagaga
agggttttcgggtcagagctggaaatgcagctgctgcagtgctctgccat
aggcctcttccttctccacaggatgaaccaaccaataacttggacataga
gtccatcgatgccctgggggaggccatcaacgactacaagggggtaagtg
ctcagacagaggcagctggagctgctgggcctcttcctctttcactcctg
actcctctctgattgttcttcctccaaagctgtgatcgttgtcaccacga
tgcgcgcctcatcacaaaac
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr17_36000107_36001262
seq2: B6Ng01-055K13.b_47_1176

seq1  GAATTCAGGTCCTCGGGCTTATACAACACTACATAGACTGAGCCATCTCC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAGGTCCTCGGGCTTATACAACACTACATAGACTGAGCCATCTCC  50

seq1  CCAGCCCTCCCACCTTGTTTTTAAAGGTGACCCTACCTAAAAACCTTCCC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGCCCTCCCACCTTGTTTTTAAAGGTGACCCTACCTAAAAACCTTCCC  100

seq1  CAGGAGGAGGCCTAGAGAAGATGGAAGATTGAAGGAACAGCAGAGTGAAC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGAGGAGGCCTAGAGAAGATGGAAGATTGAAGGAACAGCAGAGTGAAC  150

seq1  TGGGAATGGCCTTGACAAGATCTTGAAAGCATCAGGGGCTTGACATAGAG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGGAATGGCCTTGACAAGATCTTGAAAGCATCAGGGGCTTGACATAGAG  200

seq1  CTTCCAAAGATGTGGTTAGGGGAATGTCCTAGCCATCTTAACTGGCCTTT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCCAAAGATGTGGTTAGGGGAATGTCCTAGCCATCTTAACTGGCCTTT  250

seq1  TGTCCCTTTCCTTCCCAACTCCCTCAGATGCCCGCCACGGGTGGTTGGCT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTCCCTTTCCTTCCCAACTCCCTCAGATGCCCGCCACGGGTGGTTGGCT  300

seq1  GCCCTGCAGGACCGGAGCATTCTTGCCTCCTTGGCTTGGGATCTATGTCT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCCTGCAGGACCGGAGCATTCTTGCCTCCTTGGCTTGGGATCTATGTCT  350

seq1  GCTGCTACTGTTTGTGGTACAGCACAGCCTTATGGCGACTGAGGCAGTGA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTGCTACTGTTTGTGGTACAGCACAGCCTTATGGCGACTGAGGCAGTGA  400

seq1  AGGCGTGGACATCCCGGTACTTTGGCGTCCTTCAGAGGTCGCTCTATGTG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGCGTGGACATCCCGGTACTTTGGCGTCCTTCAGAGGTCGCTCTATGTG  450

seq1  GCGTGCACAGCCCTGGCCTTGCAGGTATGAGGCCTGGCCAAGGGAGACTG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCGTGCACAGCCCTGGCCTTGCAGGTATGAGGCCTGGCCAAGGGAGACTG  500

seq1  GTGGAACCGAAAGAACATGCAGAGCTCAGCCTCCATCCCTCCTGGGCATA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGGAACCGAAAGAACATGCAGAGCTCAGCCTCCATCCCTCCTGGGCATA  550

seq1  TTCTCCTATCAGCAAAGCTGTATATATTTGACATTCCCCAGCACACTAAG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTCCTATCAGCAAAGCTGTATATATTTGACATTCCCCAGCACACTAAG  600

seq1  AGAGTCTCACCTTTGCAACATTGTTCATGTTTTATTGCTTCAGCTCTGAA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGTCTCACCTTTGCAACATTGTTCATGTTTTATTGCTTCAGCTCTGAA  650

seq1  TTCCTCCCGGGTTCTTATCCTACAACCTCCCTAGGCCTCACAATAGCACT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCTCCCGGGTTCTTATCCTACAACCTCCCTAGGCCTCACAATAGCACT  700

seq1  TGTCTTCCAGTTGGTATTCTCATGGATGTTTGGCATAGGCTAGTTGAGTG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTCTTCCAGTTGGTATTCTCATGGATGTTTGGCATAGGCTAGTTGAGTG  750

seq1  ATTATTATCCACCAGCCCCCATCCCGTCCAGTCTCCAAAAAATCCTGTGT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTATTATCCACCAGCCCCCATCCCGTCCAGTCTCCAAAAAATCCTGTGT  800

seq1  AGGGATGGGCCATCTTCATGTCCTTGGTACCCCTCCCAGAACCCTCCACA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGGATGGGCCATCTTCATGTCCTTGGTACCCCTCCCAGAACCCTCCACA  850

seq1  TGGTAAATATTTACTGTTTATACCTGTCGGAAAGAGTCCTCGTAGGTTAT  900
      |||| |||| |||||||||||||||||||||||||||||||||| |||| 
seq2  TGGT-AATA-TTACTGTTTATACCTGTCGGAAAGAGTCCTCGTA-GTTA-  896

seq1  TGTGGGGCAAGGGAGACCACTGGTGTGCCCAGTCTCTCATCTTTCCCCAG  950
      |||||||| ||||||| ||||||||||||||||||||||||||| |||||
seq2  TGTGGGGC-AGGGAGA-CACTGGTGTGCCCAGTCTCTCATCTTT-CCCAG  943

seq1  TTGGTGATGCGGTACTGGGAGACTACACCCAGAGGCCCAGTGTTATGGGA  1000
      |||||||||||||||| |||||||||| |||||||||||||| |||||||
seq2  TTGGTGATGCGGTACT-GGAGACTACA-CCAGAGGCCCAGTGGTATGGGA  991

seq1  GGCTCGGGCTGAACCATGGGCCACCTGGGTACCTCTCCTCTGCTTTGTGC  1050
      ||||||||||||| |||||||   |||||||||||| |||||| ||| ||
seq2  GGCTCGGGCTGAA-CATGGGC--ACTGGGTACCTCT-CTCTGC-TTGGGC  1036

seq1  TCCACGTTGTTTCCTGGCTCCTCATCTTTAGCATCCTTCTGGTCTTTGAC  1100
      |||||| ||||| |||||| |||||||||||||||  | | ||| |||||
seq2  TCCACG-TGTTT-CTGGCT-CTCATCTTTAGCATC--TTTTGTC-TTGAC  1080

seq1  TACGCTGAACTGATGGGCCTCAAGCAGGTGAGAATCCCACACCCCTACGT  1150
      ||| ||| |||||  |||   ||||||| | |||  | ||| ||||||||
seq2  TAC-CTG-ACTGAATGGC--TAAGCAGG-GGGAAATCTACA-CCCTACGT  1124

seq1  GAGATC  1156
      ||||||
seq2  GAGATC  1130

seq1: chr17_36094492_36095415
seq2: B6Ng01-055K13.g_68_987 (reverse)

seq1  GTTTCTGTGATGAGGCGCGCATCGTGGCTGACAACGATCACAGCTTTGGA  50
      |||| |||||||||||||||||||||| ||||||||||||||||||||||
seq2  GTTT-TGTGATGAGGCGCGCATCGTGG-TGACAACGATCACAGCTTTGGA  48

seq1  GGAAGAACAAATCAAGAGAGGGAGTCAGGAGTGGAAGAGGAAGAGGCCCA  100
      |||||||| |||| ||||| ||||||||||||| ||||||||||||||||
seq2  GGAAGAAC-AATC-AGAGA-GGAGTCAGGAGTGAAAGAGGAAGAGGCCCA  95

seq1  GCAGCTCCAGCTGCCTCTGTCTGAGCACTTACCCCCCTTGTAGTCGTTGA  150
      ||||||||||||||||||||||||||||||| ||||||||||||||||||
seq2  GCAGCTCCAGCTGCCTCTGTCTGAGCACTTA-CCCCCTTGTAGTCGTTGA  144

seq1  TGGCCTCCCCCAGGGCATCGATGGACTCTATGTCCAAGTTATTGGTTGGT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGCCTCCCCCAGGGCATCGATGGACTCTATGTCCAAGTTATTGGTTGGT  194

seq1  TCATCCTGTGGAGAAGGAAGAGGCCTATGGCAGAGCACTGCAGCAGCTGC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATCCTGTGGAGAAGGAAGAGGCCTATGGCAGAGCACTGCAGCAGCTGC  244

seq1  ATTTCCAGCTCTGACCCGAAAACCCTTCTCTGATTGCCCACTCACCAAGA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTCCAGCTCTGACCCGAAAACCCTTCTCTGATTGCCCACTCACCAAGA  294

seq1  TGAGGACATCAGGCTCCCGACAGGCCAGCTCCGCAAACAC-AACTCGGGC  349
      |||||||||||||||||||||||||||||||||||||||| |||||||||
seq2  TGAGGACATCAGGCTCCCGACAGGCCAGCTCCGCAAACACAAACTCGGGC  344

seq1  TTTCTGCCCACCTGTCAC-AAAAGGAACCGTACTGAGACTCCTGTCACCC  398
      |||||||||||||||||| |||||||||||||||||||||||||||||||
seq2  TTTCTGCCCACCTGTCACAAAAAGGAACCGTACTGAGACTCCTGTCACCC  394

seq1  ACCTTGCAGAAGGCCAACCCTATGGATGTACTTGGGACATGGAGGCTCCC  448
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCTTGCAGAAGGCCAACCCTATGGATGTACTTGGGACATGGAGGCTCCC  444

seq1  CATCTGTGCTGTAAACCCCTTCAGCTTCCAGGAACAGCTGATGAGGTCAC  498
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATCTGTGCTGTAAACCCCTTCAGCTTCCAGGAACAGCTGATGAGGTCAC  494

seq1  CTCCTCAAGCACCCCAGAATGACAGTACCGGAGAGTTTGCAGATCTGGAT  548
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCCTCAAGCACCCCAGAATGACAGTACCGGAGAGTTTGCAGATCTGGAT  544

seq1  GGTGTGGGCGTGGCTCTCCAGGCCAAAGCGGCCCAAGCACTTCCGGGCAT  598
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTGTGGGCGTGGCTCTCCAGGCCAAAGCGGCCCAAGCACTTCCGGGCAT  594

seq1  CCTGGTAGGGCAGATTGAAGCTCCGCTGCAGGTACTCAGTGGGCGTCTCC  648
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGGTAGGGCAGATTGAAGCTCCGCTGCAGGTACTCAGTGGGCGTCTCC  644

seq1  TCCATGTGCAGCTGCTCTGCGTACTGCTGGTTAAAGAAGCCGATTTTCTG  698
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCATGTGCAGCTGCTCTGCGTACTGCTGGTTAAAGAAGCCGATTTTCTG  694

seq1  CCCAAGAGGAGAGGGGAGTGGTCAGTCAAGAGTCCTGCTTCCTGCCTGAC  748
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCAAGAGGAGAGGGGAGTGGTCAGTCAAGAGTCCTGCTTCCTGCCTGAC  744

seq1  CTCCAGCCTCGGTTCCCAAGGCCAGCTTACCAGCCGATGGTTCTTCCTCA  798
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCCAGCCTCGGTTCCCAAGGCCAGCTTACCAGCCGATGGTTCTTCCTCA  794

seq1  TCTCCCCGTTGGTCTGCAAGGACAAGCAAGAGTGAGAGCAGGATGGAGGT  848
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCCCCGTTGGTCTGCAAGGACAAGCAAGAGTGAGAGCAGGATGGAGGT  844

seq1  AGAGGCCCAAAGCCCAGCTTCTCTTTTCTTTGTTTGGACACAGTCTCACT  898
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGGCCCAAAGCCCAGCTTCTCTTTTCTTTGTTTGGACACAGTCTCACT  894

seq1  CTGCAGCCCAGGCTGGCCTTGAATTC  924
      ||||||||||||||||||||||||||
seq2  CTGCAGCCCAGGCTGGCCTTGAATTC  920