BAC Information

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BAC

Clone NameB6Ng01-055M02
Chromosome17 (Build37)
Map Location 26,170,307 - 26,290,721
singlet/doubletdoublet
Overlap geneRab11fip3, Decr2, Nme4, EG666609, Tmem8, Mrpl28, Axin1
Upstream geneIft140, BC054438, Telo2, 1110018H23Rik, Clcn7, Gm317, BC003965, Unkl, Gnptg, 0610007P22Rik, Ube2i, Prss34, Prss28, Prss29, LOC432543, LOC666472, Tpsab1, Mcpt6, Tpsg1, Cacna1h, Tekt4, Sstr5, LOC100042580, Sox8, Tmem112, LOC545396, Gng13, Chtf18, Rpusd1, BC052484, Msln, Narfl, Haghl, Ccdc78, BC008155, Metrn, Fbxl16, Wdr24, 2610003J06Rik, Stub1, Rhbdl1, Rhot2, Wdr90, 9530058B02Rik, 0610011F06Rik, Wfikkn1, Rab40c, LOC100043160, Pigq, F430201B04Rik, D630044L22Rik, Solh, 1700022N22Rik
Downstream genePdia2, Arhgdig, Rgs11, Itfg3, LOC100042643, Luc7l, EG383229, EG240055, C230078M08Rik, Dusp1, EG666668, Ergic1, Atp6v0e, A930001N09Rik, Bnip1, Nkx2-5, Kifc1, Phf1, Cuta, Syngap1, Zbtb9, Bak1, Ggnbp1, Itpr3, 2900010M23Rik, Ihpk3
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-055M02.bB6Ng01-055M02.g
ACCDH878113DH878114
length8821,120
definitionDH878113|Mus musculus domesticus DNA, BAC clone: B6Ng01-055M02, 5' end.DH878114|Mus musculus domesticus DNA, BAC clone: B6Ng01-055M02, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(26,289,841 - 26,290,721)(26,170,307 - 26,171,437)
sequence
gaattcttacaaaacagtaacacagtaggaaggtagccaatttcacaaaa
tatagcctgtgaacttattaagctagagtttccttttattttctttcttt
ctttgtttctttttctttttggttttgatacagcatttgatacaggagaa
aatggggggaggatagtttagcaggtaatagaatgtctgctatcgtagaa
aattaaagtttgattctcagcatccatgttgggcacctcaacagcttgta
attccatctctctcaggaatatatctctggtctcagtgggtccctgcact
tgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtacttgcaagcaaggtac
atgtgggcacacatgtccacatatatacacttaaaaataatcttttaaat
ttctcaagctgtaggtaatgattcacacctgtaatcccaatacttaggag
gtagaggcaggaaaactgggagtttaaagtaatactcagctatagaacag
gtttgaagacaatctggaatacataatgttttgttttaaaaactttttgg
atctgggagctaaagagaaggctcgtggttatgagcactggctgctcttc
cagagtacccaggttcaattcccagcaactacatggcagttcataactgt
ctctagttccaggggatctgacaacctcaaaccaacgcacataaaattaa
acaaattattgaaaaaaaaaatacttttttggatgtagggaaacaccccc
cctgggaacttagcaccagagcactgaacttagcacagttcatgcactgg
cttccgtgcagacatttcttaatggtaatgggggagaattttagttcctt
aagggccagagagcttcccagatcctaaaggt
gaattcactatctccaaaaacaacagcaacaaaagtgaaacaaatgaaaa
ggaaagcaagtcaaaatgaaaagaaccccaggaaagcggcagccaggaca
gacagcagcggccaggacagacagcagcggcagggtggatagggcttggg
tgtaaccagccaggatggctcctcagagaggaaagcaggagaagagagtg
ggctgtgaagagagttggcagcctcactgagaccagcatgtcctcttctc
aggctgaggccaagaagcacctcccctgtggaaaggacaaggggcactac
agaggctatacgatcagtcctggaaggcaagggacaataagttcatgact
gagtcctaactggcaaacaggagtaggactggggtgacaatggggtgaca
agacatcacagacaggtgtttgctgtcactggagatgaaaaacacctaca
tgctccttcagtcattaaaccaagacccaggtcactcagaagacagtctc
ctacagacagacagaaagactctgaccctgagacgcacagaagtccagaa
aatgggggcagggaccttccaagtcaaaatacaaggacagcccacagcag
agagcacaccatttaccattagctggggtccagcagagtacactaactag
aagccatggagaaatcacctcacacagacatctctatagattcttcctac
ctacccacagctcctgctgcaattcctccccgcctgatgaggcctggccc
atcaactacccaagtctgagtaagccaatgaactctctgggctagagagt
aaaaacaaacctccctcctacctgtggacaggacctgggaatactgttta
aaggtgcagagccaacctcactgcctggcatgcatagagcagtgatcagc
ccagtgctctgcacctctggagttccaaagaaaaacggacatatctatgg
tatctataatgagatgggcagtcatgatggagaattgcccattttgacaa
gcatcaaagtggccagctgttttttgtttgggtgcatgtatcacatgtgc
tagatgatcatgtggaagctgctgtgacaggcagtctgaccacgcttgct
gtagcttgctgtctcggtcc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr17_26289841_26290721
seq2: B6Ng01-055M02.b_49_930 (reverse)

seq1  ACCTTTAGTGTCTGGGTAGCTCTCTGGCCCTTTTGGAACTTATATTTCTC  50
      ||||||||  |||||| |||||||||||||||  ||||| || | |||||
seq2  ACCTTTAGGATCTGGGAAGCTCTCTGGCCCTTAAGGAAC-TAAAATTCTC  49

seq1  CCCCATTACCATTAAGAAATGTCTGCACGGAAGCCAGTGCATGAACTGTG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCCATTACCATTAAGAAATGTCTGCACGGAAGCCAGTGCATGAACTGTG  99

seq1  CTAAGTTCAGTGCTCTGGTGCTAAGTTCCCA-GGGGGGTGTTTCCCTACA  149
      ||||||||||||||||||||||||||||||| ||||||||||||||||||
seq2  CTAAGTTCAGTGCTCTGGTGCTAAGTTCCCAGGGGGGGTGTTTCCCTACA  149

seq1  TCC-AAAAAGTATTTTTTTTTTCAATAATTTGTTTAATTTTATGTGCGTT  198
      ||| ||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCAAAAAAGTATTTTTTTTTTCAATAATTTGTTTAATTTTATGTGCGTT  199

seq1  GGTTTGAGGTTGTCAGATCCCCTGGAACTAGAGACAGTTATGAACTGCCA  248
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTTTGAGGTTGTCAGATCCCCTGGAACTAGAGACAGTTATGAACTGCCA  249

seq1  TGTAGTTGCTGGGAATTGAACCTGGGTACTCTGGAAGAGCAGCCAGTGCT  298
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTAGTTGCTGGGAATTGAACCTGGGTACTCTGGAAGAGCAGCCAGTGCT  299

seq1  CATAACCACGAGCCTTCTCTTTAGCTCCCAGATCCAAAAAGTTTTTAAAA  348
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATAACCACGAGCCTTCTCTTTAGCTCCCAGATCCAAAAAGTTTTTAAAA  349

seq1  CAAAACATTATGTATTCCAGATTGTCTTCAAACCTGTTCTATAGCTGAGT  398
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAAACATTATGTATTCCAGATTGTCTTCAAACCTGTTCTATAGCTGAGT  399

seq1  ATTACTTTAAACTCCCAGTTTTCCTGCCTCTACCTCCTAAGTATTGGGAT  448
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTACTTTAAACTCCCAGTTTTCCTGCCTCTACCTCCTAAGTATTGGGAT  449

seq1  TACAGGTGTGAATCATTACCTACAGCTTGAGAAATTTAAAAGATTATTTT  498
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACAGGTGTGAATCATTACCTACAGCTTGAGAAATTTAAAAGATTATTTT  499

seq1  TAAGTGTATATATGTGGACATGTGTGCCCACATGTACCTTGCTTGCAAGT  548
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAGTGTATATATGTGGACATGTGTGCCCACATGTACCTTGCTTGCAAGT  549

seq1  ACACACACACACACACACACACACACACACACAAGTGCAGGGACCCACTG  598
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACACACACACACACACACACACACACACACAAGTGCAGGGACCCACTG  599

seq1  AGACCAGAGATATATTCCTGAGAGAGATGGAATTACAAGCTGTTGAGGTG  648
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGACCAGAGATATATTCCTGAGAGAGATGGAATTACAAGCTGTTGAGGTG  649

seq1  CCCAACATGGATGCTGAGAATCAAACTTTAATTTTCTACGATAGCAGACA  698
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCAACATGGATGCTGAGAATCAAACTTTAATTTTCTACGATAGCAGACA  699

seq1  TTCTATTACCTGCTAAACTATCCTCCCCCCATTTTCTCCTGTATCAAATG  748
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTATTACCTGCTAAACTATCCTCCCCCCATTTTCTCCTGTATCAAATG  749

seq1  CTGTATCAAAACCAAAAAGAAAAAGAAACAAAGAAAGAAAGAAAATAAAA  798
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTATCAAAACCAAAAAGAAAAAGAAACAAAGAAAGAAAGAAAATAAAA  799

seq1  GGAAACTCTAGCTTAATAAGTTCACAGGCTATATTTTGTGAAATTGGCTA  848
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAAACTCTAGCTTAATAAGTTCACAGGCTATATTTTGTGAAATTGGCTA  849

seq1  CCTTCCTACTGTGTTACTGTTTTGTAAGAATTC  881
      |||||||||||||||||||||||||||||||||
seq2  CCTTCCTACTGTGTTACTGTTTTGTAAGAATTC  882

seq1: chr17_26170307_26171437
seq2: B6Ng01-055M02.g_68_1187

seq1  GAATTCACTATCTCCAAAAACAACAGCAACAAAAGTGAAACAAATGAAAA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCACTATCTCCAAAAACAACAGCAACAAAAGTGAAACAAATGAAAA  50

seq1  GGAAAGCAAGTCAAAATGAAAAGAACCCCAGGAAAGCGGCAGCCAGGACA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAAAGCAAGTCAAAATGAAAAGAACCCCAGGAAAGCGGCAGCCAGGACA  100

seq1  GACAGCAGCGGCCAGGACAGACAGCAGCGGCAGGGTGGATAGGGCTTGGG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACAGCAGCGGCCAGGACAGACAGCAGCGGCAGGGTGGATAGGGCTTGGG  150

seq1  TGTAACCAGCCAGGATGGCTCCTCAGAGAGGAAAGCAGGAGAAGAGAGTG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTAACCAGCCAGGATGGCTCCTCAGAGAGGAAAGCAGGAGAAGAGAGTG  200

seq1  GGCTGTGAAGAGAGTTGGCAGCCTCACTGAGACCAGCATGTCCTCTTCTC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCTGTGAAGAGAGTTGGCAGCCTCACTGAGACCAGCATGTCCTCTTCTC  250

seq1  AGGCTGAGGCCAAGAAGCACCTCCCCTGTGGAAAGGACAAGGGGCACTAC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGCTGAGGCCAAGAAGCACCTCCCCTGTGGAAAGGACAAGGGGCACTAC  300

seq1  AGAGGCTATACGATCAGTCCTGGAAGGCAAGGGACAATAAGTTCATGACT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGGCTATACGATCAGTCCTGGAAGGCAAGGGACAATAAGTTCATGACT  350

seq1  GAGTCCTAACTGGCAAACAGGAGTAGGACTGGGGTGACAATGGGGTGACA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGTCCTAACTGGCAAACAGGAGTAGGACTGGGGTGACAATGGGGTGACA  400

seq1  AGACATCACAGACAGGTGTTTGCTGTCACTGGAGATGAAAAACACCTACA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGACATCACAGACAGGTGTTTGCTGTCACTGGAGATGAAAAACACCTACA  450

seq1  TGCTCCTTCAGTCATTAAACCAAGACCCAGGTCACTCAGAAGACAGTCTC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTCCTTCAGTCATTAAACCAAGACCCAGGTCACTCAGAAGACAGTCTC  500

seq1  CTACAGACAGACAGAAAGACTCTGACCCTGAGACGCACAGAAGTCCAGAA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTACAGACAGACAGAAAGACTCTGACCCTGAGACGCACAGAAGTCCAGAA  550

seq1  AATGGGGGCAGGGACCTTCCAAGTCAAAATACAAGGACAGCCCACAGCAG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGGGGGCAGGGACCTTCCAAGTCAAAATACAAGGACAGCCCACAGCAG  600

seq1  AGAGCACACCATTTACCATTAGCTGGGGTCCAGCAGAGTACACTAACTAG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGCACACCATTTACCATTAGCTGGGGTCCAGCAGAGTACACTAACTAG  650

seq1  AAGCCATGGAGAAATCACCTCACACAGACATCTCTATAGATTCTTCCTAC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGCCATGGAGAAATCACCTCACACAGACATCTCTATAGATTCTTCCTAC  700

seq1  CTACCCACAGCTCCTGCTGCAATTCCTCCCCGCCTGATGAGGCCTGGCCC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTACCCACAGCTCCTGCTGCAATTCCTCCCCGCCTGATGAGGCCTGGCCC  750

seq1  ATCAACTACCCAAGTCTGAGTAAGCCAATGAACTCCCTGGGCTAGAGAGT  800
      ||||||||||||||||||||||||||||||||||| ||||||||||||||
seq2  ATCAACTACCCAAGTCTGAGTAAGCCAATGAACTCTCTGGGCTAGAGAGT  800

seq1  AAAAACAAACCTCCCTCCTACCTGTGGACAGGACCTGGGAATACTGTTTA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAACAAACCTCCCTCCTACCTGTGGACAGGACCTGGGAATACTGTTTA  850

seq1  AAGGTGCAGAGCCAACCTCACTGCCTGGCATGCATAGAGCAGGTGATCAG  900
      ||||||||||||||||||||||||||||||||||||||||| ||||||||
seq2  AAGGTGCAGAGCCAACCTCACTGCCTGGCATGCATAGAGCA-GTGATCAG  899

seq1  CCCAGTGCTCTGCACCTCTGGAGTTCCAAAGAAAAACGGACATTATCTAT  950
      |||||||||||||||||||||||||||||||||||||||||| |||||||
seq2  CCCAGTGCTCTGCACCTCTGGAGTTCCAAAGAAAAACGGACA-TATCTAT  948

seq1  GGTATCTATAATGAGATGGGCAGTCATGATGGAGAATTGCCCATTTTGAA  1000
      ||||||||||||||||||||||||||||||||||||||||||||||||| 
seq2  GGTATCTATAATGAGATGGGCAGTCATGATGGAGAATTGCCCATTTTGA-  997

seq1  CAAAGCAATCAAAGT-GCCAGCTGTTTTATGTTTTGTGTGCATGTATCAC  1049
        |||| |||||||| |||||||||||| || |||| |||||||||||||
seq2  -CAAGC-ATCAAAGTGGCCAGCTGTTTTTTG-TTTGGGTGCATGTATCAC  1044

seq1  ATGTGCTAGATGATCTATGTGGAAGGCTGCTGGTGACAGGCAGTCTGACC  1099
      ||||||||||||||| |||||||| |||||| ||||||||||||||||||
seq2  ATGTGCTAGATGATC-ATGTGGAA-GCTGCT-GTGACAGGCAGTCTGACC  1091

seq1  ACGCTTGCCTGTAAGCCTGCTGTCTCGTGTCC  1131
      ||||||| |||| ||| |||||||||| ||||
seq2  ACGCTTG-CTGT-AGCTTGCTGTCTCG-GTCC  1120