BAC Information

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BAC

Clone NameB6Ng01-055M12
Chromosome17 (Build37)
Map Location 22,481,241 - 22,482,414
singlet/doubletsinglet
Overlap gene6330416L07Rik
Upstream geneA830058L05Rik, Zfp54, Zfp51, Zfp53, LOC100042508, Zfp52, BC049807, Zfp760, BC043476, 4930515G13Rik, 2610036F08Rik, LOC624960, 3110048L19Rik, 4930432O21Rik, LOC665820, LOC665825, LOC674332, LOC631010, EG665844, EG210853, LOC671007, EG240038, EG631624
Downstream geneZfp758, 1300003B13Rik, EG210876, LOC100042656, EG628185, ENSMUSG00000046088, EG383218, EG433078, LOC100042679, A630033E08Rik, LOC671128, LOC665961, EG434701, LOC665976, LOC100042225, LOC100042234, EG665988, LOC100042248, Zfp40, LOC100042257, LOC100042261, Vmn2r-ps133, EG666002, EG638102
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-055M12.bB6Ng01-055M12.g
ACCDH878133DH878134
length1,1571,220
definitionDH878133|Mus musculus domesticus DNA, BAC clone: B6Ng01-055M12, 5' end.DH878134|Mus musculus domesticus DNA, BAC clone: B6Ng01-055M12, 3' end.
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
gaattcattgctgagtctgtccagtcctcagacattgttcgtggaaactg
tgtgtcagcacttgctcattgcctggcatggttttatgacataaaacatt
gatattcacttggctctagaaaatcatctttttccttttcaattctcttt
aattttgtatgactccacaccatgtcatccatctgctatttcccattgtc
acactaaactgcttgaacagtggcatagaaagagaccttccaactatctg
ttaaatgtatagacaactatatgatatgacagaaataaggtcaacttaat
acataaaaagagctgcatatatactatatatatggtcatgacaactttgt
atagtaatagtatttcaatattcataattagtccttatttttgaaactta
tgcaaaaacttatacatatgtatgtaactatacatatatttgtatacctg
catgtggatgtataggtataggtataaatgacaggagtctcatttacaca
ttcttaactttcaggtagaactacaagggttatcatcatacatgaaatcc
attaatagccaggaactgaagggtctcactggagtcatatttattgctaa
ttggaaacctgagaactgcctggaacaataccaagatatagacatgcatg
tccaggaagatgttttcaacagtgataggattttgacggatctgacgtaa
tgaatgaatcatcccaagggcataatctgaaatgatgcactttatctctg
cacattctttcatacttagcaaccatcagagagtttctcccatgccagct
tcttgatgattctgccttgacattggttggaacagttgtttccaacctgt
ggctcatgactccttggaggtcaattgaccctttcacagaggtcacacct
aagacttctatactacatatattactgatggttttagaaactgatatacc
actcccatatcaatctacagtgggactcctacatgtagatatttaagagt
tcctggttctgtattaaaaagtgagaaccactgtcttagaagagttagca
catgacattccacttaagactgtaattgtatgttttgcagaattattttt
tgttttttgaagttaaagtattctcccaactggttaacatgaatttaaaa
gaggtcc
gaattcaactgctacaagtctggcagatggatgtaacacacatttcctcc
tttaggaggcttcaatacctgcatgtttctgtggatacttgttctggtat
catttttgcctcgcctcttacgggggaaaaggcctcacatgtaattcaac
attgccttgaagcctggagtgcttggggacaacccaaaattcttaaaaca
gataatggaccggcctacacctctcaaaatttcgacagttctgtcgccag
atgaatgtaactcatttaactggtttgccatacaacactcagggacaagg
cattgtggaatgtgcccaccgcactcttaaatcttacctaatcaaacaga
aagggggagtcgacaaggctctgcccttaacaccgagagtggccgtctct
atggcactctttactcttaattttttgaatcttgatgaacaaggccgcac
tgcggctgatcgtcactgttcagaaccaaacagacatagagaaatgatca
aatggaaggatgtcttaacaggaaaatggagaggcccggatcctatttta
ataagatccaggggagctatttgtgtttttccacaggaagaagacaatcc
tctttgggttccagaacgcctcacccgaaggatctccccttcagaagatg
tggacaaaagagggaacactgaaacaacgatggatactgacccttctacc
gttgatcctggttcctagtatatcaggggaattgcgttgggtattatgtc
cacctttccctgcccatgcctgtcatgcacagtgcacaagtgagcagttt
aagcttatttaaagaaaagagagattttagaatctctgctattatagttg
gcttggtagcaacagcagcaatagctgcctctatcactgcttcggccctt
gccttgtctgctacggttcagacacgcaaaccatcaatgacctttcggca
agagtgacatcggccctgacaggcagccacgcactccagatataggagct
catgttgtaacacgatcgatctgtcaagaacagtgatttcttgtgcaatg
ctagctgagtgcgaacataagctgctagctgtatacctcagttcatggga
atttaaggcactactgtcgaggctgttcataattgtccgattgaaatgat
tgcagactccggactgagatcgtctcaagtcattccactgcttgaccttg
ccatttagcggaataacagt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr17_22481241_22482414
seq2: B6Ng01-055M12.b_44_1200 (reverse)

seq1  GGACCTCTTTTCTAAATCATATGTATACCACTTTGTGAGAATACTGTTAA  50
      ||||||||||  |||||   ||||  ||||  ||| ||||||||| ||||
seq2  GGACCTCTTT--TAAAT-TCATGTTAACCA-GTTGGGAGAATACT-TTAA  45

seq1  CTTCAAACAAACACAAATACATTTCTTGGCAGAACATTACAATTACATGT  100
      ||||||| ||||| ||| | | ||||  ||| |||| |||||||||| ||
seq2  CTTCAAA-AAACA-AAAAATAATTCT--GCAAAACA-TACAATTACA-GT  89

seq1  CTTTAAGTGGAATGTCCATGTGCTAACTCTTCTAAGACAGTGGTTCTCCA  150
      | ||||||||||||| ||||||||||||||||||||||||||||||||  
seq2  C-TTAAGTGGAATGT-CATGTGCTAACTCTTCTAAGACAGTGGTTCTC--  135

seq1  CCTTTTTAATACAGAACCAGGAACTCTTAAATTATCTACATGTAGGAGTC  200
       |||||||||||||||||||||||||||||| ||||||||||||||||||
seq2  ACTTTTTAATACAGAACCAGGAACTCTTAAA-TATCTACATGTAGGAGTC  184

seq1  CCACTTGTAGATTGATATGGGAGTGGTATATCAGTTTCTAAAACCATCAG  250
      |||| |||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAC-TGTAGATTGATATGGGAGTGGTATATCAGTTTCTAAAACCATCAG  233

seq1  TAATATATGTAGTATAGAAGTCTTAGGTGTGACCTCTGTGAAAGGGTCAA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATATATGTAGTATAGAAGTCTTAGGTGTGACCTCTGTGAAAGGGTCAA  283

seq1  TTGACCTCCAAGGAGTCATGAGCCACAGGTTGGAAACAACTGTTCCAACC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGACCTCCAAGGAGTCATGAGCCACAGGTTGGAAACAACTGTTCCAACC  333

seq1  AATGTCAAGGCAGAATCATCAAGAAGCTGGCATGGGAGAAACTCTCTGAT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGTCAAGGCAGAATCATCAAGAAGCTGGCATGGGAGAAACTCTCTGAT  383

seq1  GGTTGCTAAGTATGAAAGAATGTGCAGAGATAAAGTGCATCATTTCAGAT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTTGCTAAGTATGAAAGAATGTGCAGAGATAAAGTGCATCATTTCAGAT  433

seq1  TATGCCCTTGGGATGATTCATTCATTACGTCAGATCCGTCAAAATCCTAT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATGCCCTTGGGATGATTCATTCATTACGTCAGATCCGTCAAAATCCTAT  483

seq1  CACTGTTGAAAACATCTTCCTGGACATGCATGTCTATATCTTGGTATTGT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACTGTTGAAAACATCTTCCTGGACATGCATGTCTATATCTTGGTATTGT  533

seq1  TCCAGGCAGTTCTCAGGTTTCCAATTAGCAATAAATATGACTCCAGTGAG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCAGGCAGTTCTCAGGTTTCCAATTAGCAATAAATATGACTCCAGTGAG  583

seq1  ACCCTTCAGTTCCTGGCTATTAATGGATTTCATGTATGATGATAACCCTT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCCTTCAGTTCCTGGCTATTAATGGATTTCATGTATGATGATAACCCTT  633

seq1  GTAGTTCTACCTGAAAGTTAAGAATGTGTAAATGAGACTCCTGTCATTTA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAGTTCTACCTGAAAGTTAAGAATGTGTAAATGAGACTCCTGTCATTTA  683

seq1  TACCTATACCTATACATCCACATGCAGGTATACAAATATATGTATAGTTA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACCTATACCTATACATCCACATGCAGGTATACAAATATATGTATAGTTA  733

seq1  CATACATATGTATAAGTTTTTGCATAAGTTTCAAAAATAAGGACTAATTA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATACATATGTATAAGTTTTTGCATAAGTTTCAAAAATAAGGACTAATTA  783

seq1  TGAATATTGAAATACTATTACTATACAAAGTTGTCATGACCATATATATA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAATATTGAAATACTATTACTATACAAAGTTGTCATGACCATATATATA  833

seq1  GTATATATGCAGCTCTTTTTATGTATTAAGTTGACCTTATTTCTGTCATA  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTATATATGCAGCTCTTTTTATGTATTAAGTTGACCTTATTTCTGTCATA  883

seq1  TCATATAGTTGTCTATACATTTAACAGATAGTTGGAAGGTCTCTTTCTAT  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATATAGTTGTCTATACATTTAACAGATAGTTGGAAGGTCTCTTTCTAT  933

seq1  GCCACTGTTCAAGCAGTTTAGTGTGACAATGGGAAATAGCAGATGGATGA  1000
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCACTGTTCAAGCAGTTTAGTGTGACAATGGGAAATAGCAGATGGATGA  983

seq1  CATGGTGTGGAGTCATACAAAATTAAAGAGAATTGAAAAGGAAAAAGATG  1050
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATGGTGTGGAGTCATACAAAATTAAAGAGAATTGAAAAGGAAAAAGATG  1033

seq1  ATTTTCTAGAGCCAAGTGAATATCAATGTTTTATGTCATAAAACCATGCC  1100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTTCTAGAGCCAAGTGAATATCAATGTTTTATGTCATAAAACCATGCC  1083

seq1  AGGCAATGAGCAAGTGCTGACACACAGTTTCCACGAACAATGTCTGAGGA  1150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGCAATGAGCAAGTGCTGACACACAGTTTCCACGAACAATGTCTGAGGA  1133

seq1  CTGGACAGACTCAGCAATGAATTC  1174
      ||||||||||||||||||||||||
seq2  CTGGACAGACTCAGCAATGAATTC  1157