BAC Information

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BAC

Clone NameB6Ng01-056F06
Chromosome17 (Build37)
Map Location 28,029,099 - 28,159,601
singlet/doubletdoublet
Overlap geneF830021D11Rik, Taf11, Anks1
Upstream geneKifc1, Phf1, Cuta, Syngap1, Zbtb9, Bak1, Ggnbp1, Itpr3, 2900010M23Rik, Ihpk3, Lemd2, LOC100042713, ENSMUSG00000073430, Grm4, LOC677010, Hmga1, AI413582, Nudt3, Rps10, Pacsin1, Spdef, LOC100042744, D17Wsu92e, EG666682, Snrpc
Downstream geneTcp11, 4930526A20Rik, Scube3, LOC100042764, Zfp523, Def6, Ppard, 1810013A23Rik, Fance, Rpl10a, Tead3, Tulp1, Fkbp5, 4930511I11Rik, Gm749, Clps, Tmhs, Srpk1, Slc26a8, Mapk14, LOC100043318, Mapk13, Brpf3, Pnpla1, 4930539E08Rik, Pxt1, Kctd20, Stk38
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-056F06.bB6Ng01-056F06.g
ACCDH878520DH878521
length1,0601,086
definitionDH878520|Mus musculus domesticus DNA, BAC clone: B6Ng01-056F06, 5' end.DH878521|Mus musculus domesticus DNA, BAC clone: B6Ng01-056F06, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(28,029,099 - 28,030,163)(28,158,501 - 28,159,601)
sequence
gaattcactttgtggaccaggctggcctcaaactcagagagatctctgcc
tcctgagtgctgggataaaaggggtgacacacagcccagtttttctccac
attcttgccaacacctgttctctattttgggaggagggcgttggcgtttt
aaaaagatgtttaattgtctttagtgttgcgtctctatgggtatgtgcat
gtcagtacacataaaaagaggcctctggagctgaagtcaccgttgttagg
tactgggaacagacccaggccttctgcaggagcagccagtgctgttaacc
actgagccatctctttggtctctgcctttggctttattattattattatt
attattattattattattattattattattttaaaaggtttatttacttt
ccactttttgtacatgtgtacacggtagctgtcttcagacacactccaga
agagagcatctcattccagatggctgtgagccaccatgtggttgctagga
tttgaactcagaatctctggaagagcaggcagtgctcttaaccactgagt
catctctccagcccctgcctttggcttttgagtcatcactgtgtaggctg
gctacacaagactctaggttttaatgtgtgtagtgtagaatttcctttcc
ttttcaaggccttgtatattgattatctgttacatatattattcttttgt
atatctatgccatttgctggttatctgttatatatgttgttctttgtata
tctataccatatgctgatttttctgttgaccaccagaggacatacaggtt
gcttctatttagacttgtgttaaatttgaccaaatacatcacactttaaa
aaaacaatagtccttaaatccatcagctctctggttcgcttatttgtttc
aaagttgttcctggttttggggttgaatgtgaacagatctttctgacttc
tgaatttaatctttcattgctttcttctcattgcagaatcctggtcaagt
ctgttccacaggattctgtcacaagcgtcttggatgatagtggcattcag
gaacctgtta
gaattctgtcgtaatgaacatactctaagacctaacgctgctgtggtatc
aggatagagtcctcagagcagaccaacatgagtcccatcctcttctgaca
cattttcagccttaaataaataagaaacccagaaagctattcttgttgaa
ctaacacacaaaacctaaatcaaatcgggaaactcactgagacaagccct
gcgctttttcaacggctctgctctcaaagctcttcctgcagcatcaggaa
cggcccctgcatcccagcaagctcttggaagagttgtccttcagccccat
cccctagctgcaggcaccctgcacagctaacacacagatggcatccataa
atacctgttgataacgtaaagggtcctgtcccagcctggtcagccgccag
tgaggctggccgagaacagggctccagggaggccagccagcgcacgcttg
cttgctcactagtctgcctgttactcagggagagtgttcctaagccaacc
tgttccacccctcacatagcaaccggtccctcgggctcacaatggcctgt
ctcattgaactgcttgcttatgttttaaataccagcctaagtctcagcgt
gtgtgctttggctgtgatgccaggattcacagaaatcaaggctaagcttt
cgatgtggccttgcaaggtcacacctgtcacccacagctctacgtgggca
gatgtccaagcagaagctctttggactcagttttgtggctttgttagcct
ctgacaatctcaggtcagatttgtgatgctcattcccttttctagatgga
tttggtcttgtctgtctgtctgtctgtctgtctgtctgtctgtctaacca
ccgccccccacttctctctttagttctctctctctcttactttttccttc
agacatggtctcaatatgtagttctggctattctggaactcatttacaga
caggctgaactcacaaagatcctctcgctctgcttcctagtatgggataa
aaacatgcaccactatacttggcttggaactattttaggtaggacaatta
aaacaaccaacaaacaacataaacgaaaataaaatg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr17_28029099_28030163
seq2: B6Ng01-056F06.b_47_1106

seq1  GAATTCACTTTGTGGACCAGGCTGGCCTCAAACTCAGAGAGATCTCTGCC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCACTTTGTGGACCAGGCTGGCCTCAAACTCAGAGAGATCTCTGCC  50

seq1  TCCTGAGTGCTGGGATAAAAGGGGTGACACACAGCCCAGTTTTTCTCCAC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTGAGTGCTGGGATAAAAGGGGTGACACACAGCCCAGTTTTTCTCCAC  100

seq1  ATTCTTGCCAACACCTGTTCTCTATTTTGGGAGGAGGGCGTTGGCGTTTT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTCTTGCCAACACCTGTTCTCTATTTTGGGAGGAGGGCGTTGGCGTTTT  150

seq1  AAAAAGATGTTTAATTGTCTTTAGTGTTGCGTCTCTATGGGTATGTGCAT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAAGATGTTTAATTGTCTTTAGTGTTGCGTCTCTATGGGTATGTGCAT  200

seq1  GTCAGTACACATAAAAAGAGGCCTCTGGAGCTGAAGTCACCGTTGTTAGG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCAGTACACATAAAAAGAGGCCTCTGGAGCTGAAGTCACCGTTGTTAGG  250

seq1  TACTGGGAACAGACCCAGGCCTTCTGCAGGAGCAGCCAGTGCTGTTAACC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACTGGGAACAGACCCAGGCCTTCTGCAGGAGCAGCCAGTGCTGTTAACC  300

seq1  ACTGAGCCATCTCTTTGGTCTCTGCCTTTGGCTTTATTATTATTATTATT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTGAGCCATCTCTTTGGTCTCTGCCTTTGGCTTTATTATTATTATTATT  350

seq1  ATTATTATTATTATTATTATTATTATTATTTTAAAAGGTTTATTTACTTT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTATTATTATTATTATTATTATTATTATTTTAAAAGGTTTATTTACTTT  400

seq1  CCACTTTTTGTACATGTGTACACGGTAGCTGTCTTCAGACACACTCCAGA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCACTTTTTGTACATGTGTACACGGTAGCTGTCTTCAGACACACTCCAGA  450

seq1  AGAGAGCATCTCATTCCAGATGGCTGTGAGCCACCATGTGGTTGCTAGGA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGAGCATCTCATTCCAGATGGCTGTGAGCCACCATGTGGTTGCTAGGA  500

seq1  TTTGAACTCAGAATCTCTGGAAGAGCAGGCAGTGCTCTTAACCACTGAGT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGAACTCAGAATCTCTGGAAGAGCAGGCAGTGCTCTTAACCACTGAGT  550

seq1  CATCTCTCCAGCCCCTGCCTTTGGCTTTTGAGTCATCACTGTGTAGGCTG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATCTCTCCAGCCCCTGCCTTTGGCTTTTGAGTCATCACTGTGTAGGCTG  600

seq1  GCTACACAAGACTCTAGGTTTTAATGTGTGTAGTGTAGAATTTCCTTTCC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTACACAAGACTCTAGGTTTTAATGTGTGTAGTGTAGAATTTCCTTTCC  650

seq1  -TTTCAAGGCCTTGTATATTGATTATCTGTTACATATATTATTC-TTTGT  698
       ||||||||||||||||||||||||||||||||||||||||||| |||||
seq2  TTTTCAAGGCCTTGTATATTGATTATCTGTTACATATATTATTCTTTTGT  700

seq1  ATATCTATGCCATTTGCTGGTTATCTGTTATATATGTTGTTCTTTGTATA  748
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATCTATGCCATTTGCTGGTTATCTGTTATATATGTTGTTCTTTGTATA  750

seq1  TCTATACCATATGCTGA-TTTTCTGTTGACCACCAGAGGACATACAGGTT  797
      ||||||||||||||||| ||||||||||||||||||||||||||||||||
seq2  TCTATACCATATGCTGATTTTTCTGTTGACCACCAGAGGACATACAGGTT  800

seq1  GCTTCTATTTAGACTTGTGTTAAATTTGACCAAATACATCACACTTTAAA  847
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTTCTATTTAGACTTGTGTTAAATTTGACCAAATACATCACACTTTAAA  850

seq1  AAAACAATAGTCCTTAAATCCATCAGCTCTCTGGTTCGCTTATTTGTTTT  897
      |||||||||||||||||||||||||||||||||||||||||||||| |||
seq2  AAAACAATAGTCCTTAAATCCATCAGCTCTCTGGTTCGCTTATTTG-TTT  899

seq1  CAGAGTTGTTCCTGGTTTTTGGGGTTGAATGTGAACAGATCTTTCTGACT  947
      || |||||||||||| ||||||||||||||||||||||||||||||||||
seq2  CAAAGTTGTTCCTGG-TTTTGGGGTTGAATGTGAACAGATCTTTCTGACT  948

seq1  TCTGAATTTAAATCTTTCATTGCTTTCTTCTTCATTGCAGAAT-CTGGTC  996
      ||||||||| |||||||||||||||||||| |||||||||||| ||||||
seq2  TCTGAATTT-AATCTTTCATTGCTTTCTTC-TCATTGCAGAATCCTGGTC  996

seq1  CAGAGTCTGTTCCACCAGGA-TCTGTCACAAGCGTCTTGGATGATAGTGG  1045
         ||||||||||| ||||| |||||||||||||||||||||||||||||
seq2  --AAGTCTGTTCCA-CAGGATTCTGTCACAAGCGTCTTGGATGATAGTGG  1043

seq1  CATCCAGGGGAGCCCTGTTA  1065
      ||| ||||     |||||||
seq2  CATTCAGG---AACCTGTTA  1060

seq1: chr17_28158501_28159601
seq2: B6Ng01-056F06.g_68_1153 (reverse)

seq1  CATTTTTTGTTTTTCGTTTTTGTTTGTTTGTTTGTTTGTTTTTTAATTGT  50
      ||||||    ||||||||| || ||||||||| ||   | ||||||||||
seq2  CATTTT---ATTTTCGTTTATG-TTGTTTGTTGGT---TGTTTTAATTGT  43

seq1  CCTAACTAAAATATGTTCCAAGCCAAGTATAGTGGTGCATGTCTTTAATC  100
      |||| |||||||| |||||||||||||||||||||||||||| ||| |||
seq2  CCTACCTAAAATA-GTTCCAAGCCAAGTATAGTGGTGCATGT-TTTTATC  91

seq1  CCAGTACTTAGGAGGCAGAGGCGAGAGGATCTCTGTGAGTTCAGCCTGGT  150
      ||| ||| ||||| ||||| |||||||||||| |||||||||||||| ||
seq2  CCA-TAC-TAGGAAGCAGA-GCGAGAGGATCTTTGTGAGTTCAGCCT-GT  137

seq1  CTGTATAGTGAGTTCCAGAATAGCCAGAGCTACATAATGAGACCATGTCT  200
      ||||| | |||||||||||||||||||| ||||||| |||||||||||| 
seq2  CTGTA-AATGAGTTCCAGAATAGCCAGAACTACATATTGAGACCATGTC-  185

seq1  TGAAGGAAAAAAGTAAGAGAGAGAGAGAACTAAAGAGAGAAGT-GGGGGC  249
      |||||| |||||||||||||||||||||||||||||||||||| ||||||
seq2  TGAAGG-AAAAAGTAAGAGAGAGAGAGAACTAAAGAGAGAAGTGGGGGGC  234

seq1  GGTGGATAGACAGACAGACAGACAGACAGACAGACAGACAGACAAGACC-  298
      ||||| ||||||||||||||||||||||||||||||||||||||||||| 
seq2  GGTGGTTAGACAGACAGACAGACAGACAGACAGACAGACAGACAAGACCA  284

seq1  AATCCATCTAGAAAAGGGAATGAAGCATCACAAATCTGACCTGAGATTGT  348
      |||||||||||||||||||||| |||||||||||||||||||||||||||
seq2  AATCCATCTAGAAAAGGGAATG-AGCATCACAAATCTGACCTGAGATTGT  333

seq1  CAGAGGCTAACAAAGCCACAAAACTGAGTCCAAAGAGCTTCTGCTTGGAC  398
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGAGGCTAACAAAGCCACAAAACTGAGTCCAAAGAGCTTCTGCTTGGAC  383

seq1  ATCTGCCCACGTAGAGCTGTGGGTGACAGGTGTGACCTTGCAAGGCCACA  448
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTGCCCACGTAGAGCTGTGGGTGACAGGTGTGACCTTGCAAGGCCACA  433

seq1  TCGAAAGCTTAGCCTTGATTTCTGTGAATCCTGGCATCACAGCCAAAGCA  498
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCGAAAGCTTAGCCTTGATTTCTGTGAATCCTGGCATCACAGCCAAAGCA  483

seq1  CACACGCTGAGACTTAGGCTGGTATTTAAAACATAAGCAAGCAGTTCAAT  548
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACACGCTGAGACTTAGGCTGGTATTTAAAACATAAGCAAGCAGTTCAAT  533

seq1  GAGACAGGCCATTGTGAGCCCGAGGGACCGGTTGCTATGTGAGGGGTGGA  598
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGACAGGCCATTGTGAGCCCGAGGGACCGGTTGCTATGTGAGGGGTGGA  583

seq1  ACAGGTTGGCTTAGGAACACTCTCCCTGAGTAACAGGCAGACTAGTGAGC  648
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGGTTGGCTTAGGAACACTCTCCCTGAGTAACAGGCAGACTAGTGAGC  633

seq1  AAGCAAGCGTGCGCTGGCTGGCCTCCCTGGAGCCCTGTTCTCGGCCAGCC  698
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGCAAGCGTGCGCTGGCTGGCCTCCCTGGAGCCCTGTTCTCGGCCAGCC  683

seq1  TCACTGGCGGCTGACCAGGCTGGGACAGGACCCTTTACGTTATCAACAGG  748
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCACTGGCGGCTGACCAGGCTGGGACAGGACCCTTTACGTTATCAACAGG  733

seq1  TATTTATGGATGCCATCTGTGTGTTAGCTGTGCAGGGTGCCTGCAGCTAG  798
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTTATGGATGCCATCTGTGTGTTAGCTGTGCAGGGTGCCTGCAGCTAG  783

seq1  GGGATGGGGCTGAAGGACAACTCTTCCAAGAGCTTGCTGGGATGCAGGGG  848
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGATGGGGCTGAAGGACAACTCTTCCAAGAGCTTGCTGGGATGCAGGGG  833

seq1  CCGTTCCTGATGCTGCAGGAAGAGCTTTGAGAGCAGAGCCGTTGAAAAAG  898
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCGTTCCTGATGCTGCAGGAAGAGCTTTGAGAGCAGAGCCGTTGAAAAAG  883

seq1  CGCAGGGCTTGTCTCAGTGAGTTTCCCGATTTGATTTAGGTTTTGTGTGT  948
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGCAGGGCTTGTCTCAGTGAGTTTCCCGATTTGATTTAGGTTTTGTGTGT  933

seq1  TAGTTCAACAAGAATAGCTTTCTGGGTTTCTTATTTATTTAAGGCTGAAA  998
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGTTCAACAAGAATAGCTTTCTGGGTTTCTTATTTATTTAAGGCTGAAA  983

seq1  ATGTGTCAGAAGAGGATGGGACTCATGTTGGTCTGCTCTGAGGACTCTAT  1048
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTGTCAGAAGAGGATGGGACTCATGTTGGTCTGCTCTGAGGACTCTAT  1033

seq1  CCTGATACCACAGCAGCGTTAGGTCTTAGAGTATGTTCATTACGACAGAA  1098
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGATACCACAGCAGCGTTAGGTCTTAGAGTATGTTCATTACGACAGAA  1083

seq1  TTC  1101
      |||
seq2  TTC  1086