BAC Information

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BAC

Clone NameB6Ng01-056J22
Chromosome17 (Build37)
Map Location 4,453,956 - 4,614,065
singlet/doubletdoublet
Overlap genenone
Upstream geneTiam2, LOC630810, Tfb1m, Cldn20, 1700102H20Rik, Nox3, 4930470H14Rik
Downstream genePpia-ps17_26.1, Arid1b, 5730437N04Rik, Ldhal6b, LOC100040282, LOC666919, LOC100040312, Zdhhc14
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-056J22.bB6Ng01-056J22.g
ACCDH878724DH878725
length1,1391,062
definitionDH878724|Mus musculus domesticus DNA, BAC clone: B6Ng01-056J22, 5' end.DH878725|Mus musculus domesticus DNA, BAC clone: B6Ng01-056J22, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(4,612,913 - 4,614,065)(4,453,956 - 4,455,023)
sequence
gaattccagccacaacacctattttctcaaaatggagccatggcaacttg
agttgtctgcagaagcttgtctcagactggtgagtccttagatgcctcca
ctggcccaggaaagggtgggttcaccctctgtctcatgtgagcaactacc
tctggccaccaacctgagtatgctcagggatgcccccctgagtgacatag
ccactgcttccacacagctcagtatgtgaaagatttccaccatcacttca
gatcctctccctacatgccctttatctcagctgcatagctacctgagcag
ccccctcttgggctcactgccaaacataaattgtcttcataagccagact
acctgcttttaagaacttccaagttgtctggctaataaccatagagaggc
atgtagttatgagaggatagtctgaatttcacaaaagaatttaaaaactg
gagtaattggcatcccctgtcctctggcctacacagaaagaaaaggagaa
taaagaagaaccttcttagctctttaggcctgtcccatccagagtctgct
tttccacatcatctgaaataatacttttttttttttttactgtgtgaatt
tattctgggaatgtcaaatatcagtttgatggtgccagtcattgttagca
ttgattatgaatgcagctgagacattttctcataacaacaaatcctagta
gatgctcctttcgaaacatgaagtgaattatgctctagacactcaggttt
gaaacagtgtatgtggagtcatgtacatctataacaaggaacatccataa
atgtaggtataaaatctacccgggattcctgtgactctccgtatcttctt
tagaccctacagctatcagaagcaccgctatgtcgcagttggtttattga
gagagtacaggcaatagaggattcaataaattttcccggggcttctgggg
gcttcaaataatttccccagcacaataaaagagtaaagcagactctgatg
tcaattccagcacagagacttctggacctcagtaaatatcggaactgcat
ctggctcttgcctacacctctttttctttgctgaccctgtaaccgataac
tggtcctgccaaagagaaaacctcttcattatcgattac

gaattctcaaataacaaataataaaaggaattttgaaaaaaaaaccacaa
aattagaatttgtccaataaagcaggtaaaatttgctattcaaaagtatc
cacacattaatacattgaagaagaaaagcaatctgatcatctcaataaat
tagaacttaaatttaattgaaatcagtggctcattaataaaaaatattct
taatatgctaaagtagagggtaactaaaaaatcctaataaggatttttat
caaaaaatctactgcaatcttgataaatattaataaatgacactgaaaaa
ttctgttttgtcattgttattgataatggtgatagaagcttactattacc
aaaatagtaataaataaaaataaatttgtaatatagtttagataatgaaa
attataatatatacaagctaaaaacattttttaaaatattagcagcaata
aaaagagtttatcaaaattgctagattcggaatcactctataaaactttt
tatctgcaataagaaaattatcattttaatgtagtattaaaaggctataa
atctattccagagataatctgttcttgctgcttcaaagcctatgggcttt
tattccttatcatggtgacttttgccaagatgtatttggatgatgatggt
tttttaagtcctgaatttgtcttggaactgtgagccttttcatctccaga
ttatctctccctaatttgtagttattttattttattttagtatttgttta
gttatatgggaatatctaatatttgccaattaagtttcctagatctacct
taatctctttccttatgacttctgtctttgtagcttcttttgaaattagg
ttaattaaggctgtgtgtattaaatgctctgacaggaacatacacaaatg
tactaataggaagagcagtaataagctcaatgtgtccgtaacttcagatg
tggacaatgggctatccttcagggttggggatcaaacactcccattcttc
tttgtcacttcagttgaagaagatgagaattaaccttgacaaacacggca
acaaactgaact
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr17_4612913_4614065
seq2: B6Ng01-056J22.b_47_1185 (reverse)

seq1  GTAATCTGAATAATGAAGAGCGTTTTCTCTTTGGCAGCGAACCCAGGTTA  50
      ||||||   ||||||||||| |||||||||||||||| ||  ||| ||||
seq2  GTAATC--GATAATGAAGAG-GTTTTCTCTTTGGCAG-GA--CCA-GTTA  43

seq1  TTCGGGTAACAGGGTCAGCAAAGAAAAAGA-GTGTAGGCAAAGAGCCCAG  99
      |   ||| |||||||||||||||||||||| |||||||| ||||| ||||
seq2  T--CGGTTACAGGGTCAGCAAAGAAAAAGAGGTGTAGGC-AAGAG-CCAG  89

seq1  ATGCAGTTCCGATATTTACTGAGGTTCCAGAAGTCTCCTGTGGCTGGAAT  149
      |||||||||||||||||||||||| ||||||||||| |||| ||||||||
seq2  ATGCAGTTCCGATATTTACTGAGG-TCCAGAAGTCT-CTGT-GCTGGAAT  136

seq1  GGACATCAGAGTCTGCTTTACTC-TTTATTGTGCTGGGGAAATTATTTGA  198
       |||||||||||||||||||||| ||||||||||||||||||||||||||
seq2  TGACATCAGAGTCTGCTTTACTCTTTTATTGTGCTGGGGAAATTATTTGA  186

seq1  AGCCCCCAGAAGCCCCGGGAAAATTTATTTGAATCCTCTATTGCCTGTAC  248
      ||||||||||||||||||||||||||| ||||||||||||||||||||| 
seq2  AGCCCCCAGAAGCCCCGGGAAAATTTA-TTGAATCCTCTATTGCCTGTA-  234

seq1  CTCTCTCAATAAACCAACTGCGACATAGCGGTGCTTCTGATAGCTGTAGG  298
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTCTCAATAAACCAACTGCGACATAGCGGTGCTTCTGATAGCTGTAGG  284

seq1  GTCTAAAGAAGATACGGAGAGTCACAGGAATCCCGGGTAGATTTTATACC  348
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCTAAAGAAGATACGGAGAGTCACAGGAATCCCGGGTAGATTTTATACC  334

seq1  TACATTTATGGATGTTCCTTGTTATAGATGTACATGACTCCACATACACT  398
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACATTTATGGATGTTCCTTGTTATAGATGTACATGACTCCACATACACT  384

seq1  GTTTCAAACCTGAGTGTCTAGAGCATAATTCACTTCATGTTTCGAAAGGA  448
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTCAAACCTGAGTGTCTAGAGCATAATTCACTTCATGTTTCGAAAGGA  434

seq1  GCATCTACTAGGATTTGTTGTTATGAGAAAATGTCTCAGCTGCATTCATA  498
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCATCTACTAGGATTTGTTGTTATGAGAAAATGTCTCAGCTGCATTCATA  484

seq1  ATCAATGCTAACAATGACTGGCACCATCAAACTGATATTTGACATTCCCA  548
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCAATGCTAACAATGACTGGCACCATCAAACTGATATTTGACATTCCCA  534

seq1  GAATAAATTCACACAGTAAAAAAAAAAAAAAGTATTATTTCAGATGATGT  598
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATAAATTCACACAGTAAAAAAAAAAAAAAGTATTATTTCAGATGATGT  584

seq1  GGAAAAGCAGACTCTGGATGGGACAGGCCTAAAGAGCTAAGAAGGTTCTT  648
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAAAAGCAGACTCTGGATGGGACAGGCCTAAAGAGCTAAGAAGGTTCTT  634

seq1  CTTTATTCTCCTTTTCTTTCTGTGTAGGCCAGAGGACAGGGGATGCCAAT  698
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTATTCTCCTTTTCTTTCTGTGTAGGCCAGAGGACAGGGGATGCCAAT  684

seq1  TACTCCAGTTTTTAAATTCTTTTGTGAAATTCAGACTATCCTCTCATAAC  748
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACTCCAGTTTTTAAATTCTTTTGTGAAATTCAGACTATCCTCTCATAAC  734

seq1  TACATGCCTCTCTATGGTTATTAGCCAGACAACTTGGAAGTTCTTAAAAG  798
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACATGCCTCTCTATGGTTATTAGCCAGACAACTTGGAAGTTCTTAAAAG  784

seq1  CAGGTAGTCTGGCTTATGAAGACAATTTATGTTTGGCAGTGAGCCCAAGA  848
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGTAGTCTGGCTTATGAAGACAATTTATGTTTGGCAGTGAGCCCAAGA  834

seq1  GGGGGCTGCTCAGGTAGCTATGCAGCTGAGATAAAGGGCATGTAGGGAGA  898
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGGGCTGCTCAGGTAGCTATGCAGCTGAGATAAAGGGCATGTAGGGAGA  884

seq1  GGATCTGAAGTGATGGTGGAAATCTTTCACATACTGAGCTGTGTGGAAGC  948
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGATCTGAAGTGATGGTGGAAATCTTTCACATACTGAGCTGTGTGGAAGC  934

seq1  AGTGGCTATGTCACTCAGGGGGGCATCCCTGAGCATACTCAGGTTGGTGG  998
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTGGCTATGTCACTCAGGGGGGCATCCCTGAGCATACTCAGGTTGGTGG  984

seq1  CCAGAGGTAGTTGCTCACATGAGACAGAGGGTGAACCCACCCTTTCCTGG  1048
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGAGGTAGTTGCTCACATGAGACAGAGGGTGAACCCACCCTTTCCTGG  1034

seq1  GCCAGTGGAGGCATCTAAGGACTCACCAGTCTGAGACAAGCTTCTGCAGA  1098
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCAGTGGAGGCATCTAAGGACTCACCAGTCTGAGACAAGCTTCTGCAGA  1084

seq1  CAACTCAAGTTGCCATGGCTCCATTTTGAGAAAATAGGTGTTGTGGCTGG  1148
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAACTCAAGTTGCCATGGCTCCATTTTGAGAAAATAGGTGTTGTGGCTGG  1134

seq1  AATTC  1153
      |||||
seq2  AATTC  1139


seq1: chr17_4453956_4455023
seq2: B6Ng01-056J22.g_66_1127

seq1  GAATTCTCAAATAACAAATAATAAAAGGAATTTTGAAAAAAAAACCACAA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTCAAATAACAAATAATAAAAGGAATTTTGAAAAAAAAACCACAA  50

seq1  AATTAGAATTTGTCCAATAAAGCAGGTAAAATTTGCTATTCAAAAGTATC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTAGAATTTGTCCAATAAAGCAGGTAAAATTTGCTATTCAAAAGTATC  100

seq1  CACACATTAATACATTGAAGAAGAAAAGCAATCTGATCATCTCAATAAAT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACACATTAATACATTGAAGAAGAAAAGCAATCTGATCATCTCAATAAAT  150

seq1  TAGAACTTAAATTTAATTGAAATCAGTGGCTCATTAATAAAAAATATTCT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGAACTTAAATTTAATTGAAATCAGTGGCTCATTAATAAAAAATATTCT  200

seq1  TAATATGCTAAAGTAGAGGGTAACTAAAAAATCCTAATAAGGATTTTTAT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATATGCTAAAGTAGAGGGTAACTAAAAAATCCTAATAAGGATTTTTAT  250

seq1  CAAAAAATCTACTGCAATCTTGATAAATATTAATAAATGACACTGAAAAA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAAAAATCTACTGCAATCTTGATAAATATTAATAAATGACACTGAAAAA  300

seq1  TTCTGTTTTGTCATTGTTATTGATAATGGTGATAGAAGCTTACTATTACC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTGTTTTGTCATTGTTATTGATAATGGTGATAGAAGCTTACTATTACC  350

seq1  AAAATAGTAATAAATAAAAATAAATTTGTAATATAGTTTAGATAATGAAA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAATAGTAATAAATAAAAATAAATTTGTAATATAGTTTAGATAATGAAA  400

seq1  ATTATAATATATACAAGCTAAAAACATTTTTTAAAATATTAGCAGCAATA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTATAATATATACAAGCTAAAAACATTTTTTAAAATATTAGCAGCAATA  450

seq1  AAAAGAGTTTATCAAAATTGCTAGATTCGGAATCACTCTATAAAACTTTT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAGAGTTTATCAAAATTGCTAGATTCGGAATCACTCTATAAAACTTTT  500

seq1  TATCTGCAATAAGAAAATTATCATTTTAATGTAGTATTAAAAGGCTATAA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATCTGCAATAAGAAAATTATCATTTTAATGTAGTATTAAAAGGCTATAA  550

seq1  ATCTATTCCAGAGATAATCTGTTCTTGCTGCTTCAAAGCCTATGGGCTTT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTATTCCAGAGATAATCTGTTCTTGCTGCTTCAAAGCCTATGGGCTTT  600

seq1  TATTCCTTATCATGGTGACTTTTGCCAAGATGTATTTGGATGATGATGGT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTCCTTATCATGGTGACTTTTGCCAAGATGTATTTGGATGATGATGGT  650

seq1  TTTTTAAGTCCTGAATTTGTCTTGGAACTGTGAGCCTTTTCATCTCCAGA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTAAGTCCTGAATTTGTCTTGGAACTGTGAGCCTTTTCATCTCCAGA  700

seq1  TTATCTCTCCCTAATTTGTAGTTATTTTATTTTATTTTAGTATTTGTTTA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATCTCTCCCTAATTTGTAGTTATTTTATTTTATTTTAGTATTTGTTTA  750

seq1  GTTATAT-GGAATATCTAATATTTGCCAATTAAGTTTCCTAGATCTACCT  799
      ||||||| ||||||||||||||||||||||||||||||||||||||||||
seq2  GTTATATGGGAATATCTAATATTTGCCAATTAAGTTTCCTAGATCTACCT  800

seq1  TAATCTCTTTCCTTATGACTTCTGTCTTTGTAGCTTCTTTTGAAATTAGG  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATCTCTTTCCTTATGACTTCTGTCTTTGTAGCTTCTTTTGAAATTAGG  850

seq1  TTAATTAAGGCTGTGTGTATTAAATGCTCTGACAGGAACATACACAAATG  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAATTAAGGCTGTGTGTATTAAATGCTCTGACAGGAACATACACAAATG  900

seq1  TACTAATAGGAAAGAGCAAGTAATAAGCTCAAATGTGTCCGTAACTTCAG  949
      |||||||||| |||||| |||||||||||| |||||||||||||||||||
seq2  TACTAATAGG-AAGAGC-AGTAATAAGCTC-AATGTGTCCGTAACTTCAG  947

seq1  ATGTGACAAATGGGCTATCCTTCAGGGTTTGGGATCAAACACTCCCATTC  999
      |||||   ||||||||||||||||||||| ||||||||||||||||||||
seq2  ATGTGGACAATGGGCTATCCTTCAGGGTTGGGGATCAAACACTCCCATTC  997

seq1  TTCTTTGTCAACTTCAGTTGGAGAAGAATGAGAAATTAACCTTGACAAAC  1049
      ||||||||| |||||||||| ||||| ||||| |||||||||||||||||
seq2  TTCTTTGTC-ACTTCAGTTGAAGAAG-ATGAG-AATTAACCTTGACAAAC  1044

seq1  ACGGCATACAAACTGAACT  1068
      |||||| ||||||||||||
seq2  ACGGCA-ACAAACTGAACT  1062


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