BAC Information

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BAC

Clone NameB6Ng01-056L01
Chromosome17 (Build37)
Map Location 88,363,699 - 88,467,210
singlet/doubletdoublet
Overlap geneEG626920, Msh6, Fbxo11
Upstream geneRhoq, Pigf, Cript, EG433144, Socs5, Mcfd2, Ttc7, 1700011E24Rik, Calm2, LOC100043727, Tacstd1, Msh2, Kcnk12, LOC626888, LOC668863
Downstream geneEG225058, Foxn2, Ccdc128, LOC668866, Gtf2a1lf, Lhcgr, LOC668867, Fshr
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-056L01.bB6Ng01-056L01.g
ACCDH878770DH878771
length1,086519
definitionDH878770|Mus musculus domesticus DNA, BAC clone: B6Ng01-056L01, 5' end.DH878771|Mus musculus domesticus DNA, BAC clone: B6Ng01-056L01, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(88,466,111 - 88,467,210)(88,363,699 - 88,364,223)
sequence
gaattctgtgaatataggctttagctactcatgcatgactcgaattgttg
gattttttttaataaaataatttcttaaggtttatgtgtgagttctgcct
gcatgcaagtctgtacaccaagtgcatgcctggtgcttgcagaggccaga
agagggggacagatgccctagaattggagttacagatagttggagctacc
atgtggttgctgggactgaagtgagacctctggaaggacagccagtgctc
ttaagggatgagccatctttctagcccctcaagatatttttcaaatagct
gtcttcacatacaggttttgaaaagattgtgagtctttgaaaatcacatg
accaaaaaagaaaaaaaaaaacccagcaattgtacatcatatgataggtt
attatttaaatggcaggagatgtctgacatctagaagggtgatttgccaa
cagtggtggcgaatgcctttaatcccagcacgtgggaggcagaggcaggc
ggatttctgagttagaggccagcctgatctacagaatgagttccaggaca
gccaggactacacagagaaattctgtctcaaaaaaccaagaaagaaaaaa
gaaaaaaaaaaagaaaaagaaaaaaagaaaaaaagaaaaaaatctgtaat
ttacacatagcacaataccgtagacttacctctcctgtgcgtcccttaga
attcacttttctccctccctttctgaagctttgtaatgttttatctatct
taagcctagaaagcaatcaatgaaattcaagtagaaaatcactgacagct
ccgaaatgagggaatccagagataaaccactagctatgcaataaggaata
gtgagcggagtacattttcagtcttcataacggcggccagggaatagaaa
cacattttccttggggagagattgtgctaaggggacagacacagatacaa
agattattcctctcggggtttatctttctgacttcgtgggactaaacaaa
ccatataatcatcacaacctccacccgtttattttacttcttccgaacac
atgtagaccacttgccccccccccccccaaaaaaaa
ctgagtgtgagaacacatgggtctctctggttctcatgccttctcttggg
ttttttccttctggtttttttttttttttttttttttttttttgtttttc
aagacagggtttttctgtagccctggctgtcctggaactcactttgtaga
ccaggctggcctccaactcaaaaatccccctgcctctgcctcccaattgc
tgggattaaaggcatgcgccatttgtctaattccaatatcatagtttgtg
ttccattttatgatgttttactatatcccttaaaagcctgttttcttatg
agagacagaatgagaatagatctacgtgggaggcaagatgaggagggagg
aaataggaagaacagagggagggaaataaaaaaaacattttaagctgaat
ggcacacatgcctggaatcccagcacttggtatgcagaggcaggaacacc
aggaggtcagggtcaaattgttttaagccagcctgggctgcatgaaacca
ttacagaaacttaaaaagg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr17_88466111_88467210
seq2: B6Ng01-056L01.b_44_1129 (reverse)

seq1  TTTTTTTTGGGGGGGGGGGGGGGGCAAGTGGTCTACATGGTGTTCCGGAA  50
      ||||||||  |||||||||||||||||||||||||||| ||||| |||||
seq2  TTTTTTTT--GGGGGGGGGGGGGGCAAGTGGTCTACAT-GTGTT-CGGAA  46

seq1  GAAGTAAAATAAAACGGGTGGAGGTTGTGATGGATTATATTGGTTTTGTT  100
      |||||||||| |||||||||||||||||||| ||||||||  | ||||||
seq2  GAAGTAAAAT-AAACGGGTGGAGGTTGTGAT-GATTATAT--GGTTTGTT  92

seq1  TTAGGTCCCACGAAGTCAAGAAAGATAAACCCCCGAGAGGAATAATCTTT  150
      |   ||||||||||||| ||||||||||| ||||||||||||||||| ||
seq2  T--AGTCCCACGAAGTC-AGAAAGATAAA-CCCCGAGAGGAATAATC-TT  137

seq1  TGTATCTGTGTCTGGTCCCCTTAGCACAATCTCTCCCCAAGGAAAATGTG  200
      ||||||||||||| ||||||||||||||||||||||||||||||||||||
seq2  TGTATCTGTGTCT-GTCCCCTTAGCACAATCTCTCCCCAAGGAAAATGTG  186

seq1  TTTCTATTCCCTGGCCGCCGTTATGAAGACTGAAAATGTACTCCGCTCAC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCTATTCCCTGGCCGCCGTTATGAAGACTGAAAATGTACTCCGCTCAC  236

seq1  TATTCCTTATTGCATAGCTAGTGGTTTATCTCTGGATTCCCTCATTTCGG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTCCTTATTGCATAGCTAGTGGTTTATCTCTGGATTCCCTCATTTCGG  286

seq1  AGCTGTCAGTGATTTTCTACTTGAATTTCATTGATTGCTTTCTAGGCTTA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCTGTCAGTGATTTTCTACTTGAATTTCATTGATTGCTTTCTAGGCTTA  336

seq1  AGATAGATAAAACATTACAAAGCTTCAGAAAGGGAGGGAGAAAAGTGAAT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATAGATAAAACATTACAAAGCTTCAGAAAGGGAGGGAGAAAAGTGAAT  386

seq1  TCTAAGGGACGCACAGGAGAGGTAAGTCTACGGTATTGTGCTATGTGTAA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTAAGGGACGCACAGGAGAGGTAAGTCTACGGTATTGTGCTATGTGTAA  436

seq1  ATTACAGATTTTTTTCTTTTTTTCTTTTTTTCTTTTTCTTTTTTTTTTTC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTACAGATTTTTTTCTTTTTTTCTTTTTTTCTTTTTCTTTTTTTTTTTC  486

seq1  TTTTTTCTTTCTTGGTTTTTTGAGACAGAATTTCTCTGTGTAGTCCTGGC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTTCTTTCTTGGTTTTTTGAGACAGAATTTCTCTGTGTAGTCCTGGC  536

seq1  TGTCCTGGAACTCATTCTGTAGATCAGGCTGGCCTCTAACTCAGAAATCC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTCCTGGAACTCATTCTGTAGATCAGGCTGGCCTCTAACTCAGAAATCC  586

seq1  GCCTGCCTCTGCCTCCCACGTGCTGGGATTAAAGGCATTCGCCACCACTG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCTGCCTCTGCCTCCCACGTGCTGGGATTAAAGGCATTCGCCACCACTG  636

seq1  TTGGCAAATCACCCTTCTAGATGTCAGACATCTCCTGCCATTTAAATAAT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGGCAAATCACCCTTCTAGATGTCAGACATCTCCTGCCATTTAAATAAT  686

seq1  AACCTATCATATGATGTACAATTGCTGGGTTTTTTTTTTTCTTTTTTGGT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACCTATCATATGATGTACAATTGCTGGGTTTTTTTTTTTCTTTTTTGGT  736

seq1  CATGTGATTTTCAAAGACTCACAATCTTTTCAAAACCTGTATGTGAAGAC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATGTGATTTTCAAAGACTCACAATCTTTTCAAAACCTGTATGTGAAGAC  786

seq1  AGCTATTTGAAAAATATCTTGAGGGGCTAGAAAGATGGCTCATCCCTTAA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCTATTTGAAAAATATCTTGAGGGGCTAGAAAGATGGCTCATCCCTTAA  836

seq1  GAGCACTGGCTGTCCTTCCAGAGGTCTCACTTCAGTCCCAGCAACCACAT  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGCACTGGCTGTCCTTCCAGAGGTCTCACTTCAGTCCCAGCAACCACAT  886

seq1  GGTAGCTCCAACTATCTGTAACTCCAATTCTAGGGCATCTGTCCCCCTCT  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTAGCTCCAACTATCTGTAACTCCAATTCTAGGGCATCTGTCCCCCTCT  936

seq1  TCTGGCCTCTGCAAGCACCAGGCATGCACTTGGTGTACAGACTTGCATGC  1000
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGGCCTCTGCAAGCACCAGGCATGCACTTGGTGTACAGACTTGCATGC  986

seq1  AGGCAGAACTCACACATAAACCTTAAGAAATTATTTTATTAAAAAAAATC  1050
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGCAGAACTCACACATAAACCTTAAGAAATTATTTTATTAAAAAAAATC  1036

seq1  CAACAATTCGAGTCATGCATGAGTAGCTAAAGCCTATATTCACAGAATTC  1100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAACAATTCGAGTCATGCATGAGTAGCTAAAGCCTATATTCACAGAATTC  1086

seq1: chr17_88363699_88364223
seq2: B6Ng01-056L01.g_66_590

seq1  GAATTCCTGAGTGTGAGAACACATGGGTCTCTCTGGTTCTCATGCCTTCT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCTGAGTGTGAGAACACATGGGTCTCTCTGGTTCTCATGCCTTCT  50

seq1  CTTGGGTTTTTTCCTTCTGGTTTTTTTTTTTTTTTTTTTTTTTTTTTTGG  100
      |||||||||||||||||||||||||||||||||||||||||||||||| |
seq2  CTTGGGTTTTTTCCTTCTGGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTG  100

seq1  TTTTTCAAGACAGGGTTTTTCTGTAGCCCTGGCTGTCCTGGAACTCACTT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTCAAGACAGGGTTTTTCTGTAGCCCTGGCTGTCCTGGAACTCACTT  150

seq1  TGTAGACCAGGCTGGCCTCGAACTCAGAAATCCGCCTGCCTCTGCCTCCC  200
      ||||||||||||||||||| |||||| |||||| ||||||||||||||||
seq2  TGTAGACCAGGCTGGCCTCCAACTCAAAAATCCCCCTGCCTCTGCCTCCC  200

seq1  AATTGCTGGGATTAAAGGCATGCGCCATTTGTCTAATTCCAATATCATAG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTGCTGGGATTAAAGGCATGCGCCATTTGTCTAATTCCAATATCATAG  250

seq1  TTTGTGTTCCATTTTATGATGTTTTACTATATCCCTTAGAAGCCTGTTTT  300
      |||||||||||||||||||||||||||||||||||||| |||||||||||
seq2  TTTGTGTTCCATTTTATGATGTTTTACTATATCCCTTAAAAGCCTGTTTT  300

seq1  CTTATGAGAGACAGAATGAGAATAGATCTACGTGGGAGGCAAGATGAGGA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTATGAGAGACAGAATGAGAATAGATCTACGTGGGAGGCAAGATGAGGA  350

seq1  GGGAGGAAGTAGGAAGAACAGAGGGAGGGAAATAAAAAAAACATTTTAAG  400
      |||||||| |||||||||||||||||||||||||||||||||||||||||
seq2  GGGAGGAAATAGGAAGAACAGAGGGAGGGAAATAAAAAAAACATTTTAAG  400

seq1  CTGAGTGGCACACATGCCTGGAATCCCAGCACTTGGTATGCAGAGGCAGG  450
      |||| |||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGAATGGCACACATGCCTGGAATCCCAGCACTTGGTATGCAGAGGCAGG  450

seq1  AACACCAGGAGGTCAGGTTCAGATTGTTTGAGGCCAGCCTGGGCTGCATG  500
      ||||||||||||||||| ||| ||||||| | ||||||||||||||||||
seq2  AACACCAGGAGGTCAGGGTCAAATTGTTTTAAGCCAGCCTGGGCTGCATG  500

seq1  AGACCATAACAGAAACTTAAAAAGG  525
      | ||||| |||||||||||||||||
seq2  AAACCATTACAGAAACTTAAAAAGG  525