BAC Information

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BAC

Clone NameB6Ng01-056L04
Chromosome17 (Build37)
Map Location 58,177,780 - 58,310,118
singlet/doubletdoublet
Overlap geneCntnap5c
Upstream geneSlc25a41, Slc25a23, Crb3, Dennd1c, Tubb4, Tnfsf9, Cd70, Tnfsf14, C3, Gpr108, Trip10, LOC668635, Vav1, Emr1, EG224916, LOC674419
Downstream geneLOC620408, EG545216, LOC668648, 2610034M16Rik, Nudt12, 4930505H01Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-056L04.bB6Ng01-056L04.g
ACCDH878776DH878777
length1,1351,140
definitionDH878776|Mus musculus domesticus DNA, BAC clone: B6Ng01-056L04, 5' end.DH878777|Mus musculus domesticus DNA, BAC clone: B6Ng01-056L04, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(58,177,780 - 58,178,924)(58,308,974 - 58,310,118)
sequence
gaattcatcctcgaagttcttacagaagcatatgaaactcctcataatta
aagtggcattcagtaactcacatagtaaaaacgtaatttcatagtgctct
ttctggctattacaatagttattctaactctaaaatatagaggaaaagaa
acatctaatgatattgtggtagatttttgtgctttatgagttcaaagtgt
ttattggtgcttttgaatagctacatttagtgtgcatttgcacatttctg
ttatacttgtatacatcctatactaagtatgttaaattgttagatatatt
attagctacccctttcagtttaatctaaaaatatagttttcattcataca
tatttgaaaatgttatgagaacttgaaatgtgccacttcaacaactctta
tatcctattgttgatttacatgtgtttaatctctcctcaaactcctaaac
attatcttcaatttttaagtcattagtctttttcagacactattaataag
tgaaataataaataataatttatttccttataataaatttccagaaagca
gatgagtaggttaaaaggccaagacataaagatccctatctaatgtcctg
attttgactttgtcagtgaccatgttttcttaacctgttcatctgaaata
ttgcactaatgaggatcagccagcacaacctgaataccttccaacaaatg
caagaactaggcttgcaagatccaattacagagtgaattagtggagaaac
ctgctgggaaatttcctctgatttcaaagccaggctaggctgttagaaga
gaaattatggtgattcttttttcattttctgttgtttttttatatgtaat
agtgatagacatgtgtgagtgcagagtggtccttgcacgtatgtggcaca
tattaagagtgagtctctctctcaaacgcagagctcagtgaaatgggggc
atctgtgaggcagtttgcactggaaacctcagtctctactgaccagggct
ggaattccagtgggccaccacacctaccaggaatttacaagggtttctag
agatctgaattctgtcatagctgcaaatcaaggacttggactgcccagcc
acctctcaagcttcatatatggattccagaaaaaa
gaattccaggaaatgcaatagctttgtgacttagaaattttgtttaatgg
ctcaatttaactggagattatgcagtaggctgttattccagaaagaccaa
ttcaaagcagaggctcatacacatggagatataatccactgcaggcaata
gtctgagagccccatcttatgaagccatatgtggtccacacattgggtaa
tagcatgagacataaaaacctgcttttcccatctcattggtggctgtttt
tgagctctttggaaaatactacattagagaaatcaaattgtccctttgaa
atgtaagctacattacatagtggaataatataaagaagaaacaacactag
cattatttcaagcaattaaactgcaagtgaactgcaacccatacatgacc
cgtgaaggaatctccgccagtaaaccagctttgaatgttgtccctggctg
agctaagttcactacccatgaagacactggtcctgctttcagggagggaa
gatatagtgaggaaagtgatataggactgaaagtcaggaaaaagtaaaaa
actcactagaagggaaaagagccccttgccttggagtctggctgttgctt
ccgagaagaaagaactccagtacaatgacaactactgaaggtgtttccct
cttcctgcagaaaagctacaattttccaagtctatcaccagaaacacttt
gtaaagtggctcctgatattagcttttccaattataatctcctcccaaaa
gtgtctacagccactctaaagtgacacttatcaaaagagagaaaaggagg
tgaagtctcttaacaatccttctagatgtaccccgatagctaccaaaata
atctatgtgatagtggcaagacactcagtagtactctttgtgagaagctc
atatgatatctgtattatttatctaagcactctttttctaaaccaccatt
attgattttttttttactagatagcattgctagggttcagtgagatggaa
cattgggtaacagcacttgttttcaggtttaattttgagatgcaaatggg
gaaaggaaaaataactccctgaacttatgcttgtaccttttcaccttctc
aggcctatacaaacatgtaaaatgagtgtaatggaaaatt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr17_58177780_58178924
seq2: B6Ng01-056L04.b_47_1181

seq1  GAATTCATCCTCGAAGTTCTTACAGAAGCATATGAAACTCCTCATAATTA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCATCCTCGAAGTTCTTACAGAAGCATATGAAACTCCTCATAATTA  50

seq1  AAGTGGCATTCAGTAACTCACATAGTAAAAACGTAATTTCATAGTGCTCT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTGGCATTCAGTAACTCACATAGTAAAAACGTAATTTCATAGTGCTCT  100

seq1  TTCTGGCTATTACAATAGTTATTCTAACTCTAAAATATAGAGGAAAAGAA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTGGCTATTACAATAGTTATTCTAACTCTAAAATATAGAGGAAAAGAA  150

seq1  ACATCTAATGATATTGTGGTAGATTTTTGTGCTTTATGAGTTCAAAGTGT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATCTAATGATATTGTGGTAGATTTTTGTGCTTTATGAGTTCAAAGTGT  200

seq1  TTATTGGTGCTTTTGAATAGCTACATTTAGTGTGCATTTGCACATTTCTG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATTGGTGCTTTTGAATAGCTACATTTAGTGTGCATTTGCACATTTCTG  250

seq1  TTATACTTGTATACATCCTATACTAAGTATGTTAAATTGTTAGATATATT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATACTTGTATACATCCTATACTAAGTATGTTAAATTGTTAGATATATT  300

seq1  ATTAGCTACCCCTTTCAGTTTAATCTAAAAATATAGTTTTCATTCATACA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTAGCTACCCCTTTCAGTTTAATCTAAAAATATAGTTTTCATTCATACA  350

seq1  TATTTGAAAATGTTATGAGAACTTGAAATGTGCCACTTCAACAACTCTTA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTTGAAAATGTTATGAGAACTTGAAATGTGCCACTTCAACAACTCTTA  400

seq1  TATCCTATTGTTGATTTACATGTGTTTAATCTCTCCTCAAACTCCTAAAC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATCCTATTGTTGATTTACATGTGTTTAATCTCTCCTCAAACTCCTAAAC  450

seq1  ATTATCTTCAATTTTTAAGTCATTAGTCTTTTTCAGACACTATTAATAAG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTATCTTCAATTTTTAAGTCATTAGTCTTTTTCAGACACTATTAATAAG  500

seq1  TGAAATAATAAATAATAATTTATTTCCTTATAATAAATTTCCAGAAAGCA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAAATAATAAATAATAATTTATTTCCTTATAATAAATTTCCAGAAAGCA  550

seq1  GATGAGTAGGTTAAAAGGCCAAGACATAAAGATCCCTATCTAATGTCCTG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATGAGTAGGTTAAAAGGCCAAGACATAAAGATCCCTATCTAATGTCCTG  600

seq1  ATTTTGACTTTGTCAGTGACCATGTTTTCTTAACCTGTTCATCTGAAATA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTTGACTTTGTCAGTGACCATGTTTTCTTAACCTGTTCATCTGAAATA  650

seq1  TTGCACTAATGAGGATCAGCCAGCACAACCTGAATACCTTCCAACAAATG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGCACTAATGAGGATCAGCCAGCACAACCTGAATACCTTCCAACAAATG  700

seq1  CAAGAACTAGGCTTGCAAGATCCAATTACAGAGTGAATTAGTGGAGAAAC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAGAACTAGGCTTGCAAGATCCAATTACAGAGTGAATTAGTGGAGAAAC  750

seq1  CTGCTGGGAAATTTCCTCTGATTTCAAAGCCAGGCTAGGCTGTTAGAAGA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGCTGGGAAATTTCCTCTGATTTCAAAGCCAGGCTAGGCTGTTAGAAGA  800

seq1  GAAATTATGGTGATTCTTTTTTCATTTTCTGTTGTTTTTTTTATATGTAA  850
      |||||||||||||||||||||||||||||||||| |||||||||||||||
seq2  GAAATTATGGTGATTCTTTTTTCATTTTCTGTTG-TTTTTTTATATGTAA  849

seq1  TAGTGATAGACATGTGTGAGTGCAGAGTGGTCCTTGCACGTATGTGGCAC  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGTGATAGACATGTGTGAGTGCAGAGTGGTCCTTGCACGTATGTGGCAC  899

seq1  ATATTAAGAGTGAGTCTCTCTCTCAAACGCAGAGCTCAGTGAAATGGGGG  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATTAAGAGTGAGTCTCTCTCTCAAACGCAGAGCTCAGTGAAATGGGGG  949

seq1  CATCTTGTGAGGCAGTTTGCACTGGAAACCTCAGTCTCTACTGACCAGGG  1000
      |||| |||||||||||||||||||||||||||||||||||||||||||||
seq2  CATC-TGTGAGGCAGTTTGCACTGGAAACCTCAGTCTCTACTGACCAGGG  998

seq1  CTGGAATTCCAGTGGGCCACCACACCTACCAGGAATTTACAAGGGTTTCT  1050
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGAATTCCAGTGGGCCACCACACCTACCAGGAATTTACAAGGGTTTCT  1048

seq1  AGAGATCTGAATTCTGGTCATTAAGCTTGCACATCAAGGACTTGGACTGC  1100
      ||||||||||||||| |||||  ||| |||| ||||||||||||||||||
seq2  AGAGATCTGAATTCT-GTCAT--AGC-TGCAAATCAAGGACTTGGACTGC  1094

seq1  ACAGCCATCTCCCCAGCCTTCATATAATGAATTTTCAAGAAAAAA  1145
       |||||| ||| | || |||||||||  ||   ||| ||||||||
seq2  CCAGCCACCTCTCAAG-CTTCATATATGGA---TTCCAGAAAAAA  1135

seq1: chr17_58308974_58310118
seq2: B6Ng01-056L04.g_68_1207 (reverse)

seq1  AATTTTTCATTACATCTATTTTACATGTTTGTATATGACTGTGAAGGTGG  50
      |||||| |||||||   |||||||||||||||||| | ||| ||||||| 
seq2  AATTTTCCATTACACTCATTTTACATGTTTGTATAGGCCTGAGAAGGTGA  50

seq1  AAAGGTCAAAGCATAAAGTTCA-GGAGTTAATTTTTCCTTTCCCCATGTG  99
      ||||||  |||||| ||||||| |||||| ||||||||||||||||| ||
seq2  AAAGGTACAAGCAT-AAGTTCAGGGAGTT-ATTTTTCCTTTCCCCATTTG  98

seq1  CATCTCAAAATTAAACTTGAAAACAAGTGCTGTTACCCAATGTTCCATCT  149
      |||||||||||||||| |||||||||||||||||||||||||||||||||
seq2  CATCTCAAAATTAAACCTGAAAACAAGTGCTGTTACCCAATGTTCCATCT  148

seq1  CACTGAACCCTAGCAATGCTATTCTAGTAAAAAAAAAATCAATAATGGTG  199
      ||||||||||||||||||||| ||||||||||||||||||||||||||||
seq2  CACTGAACCCTAGCAATGCTA-TCTAGTAAAAAAAAAATCAATAATGGTG  197

seq1  GTTTAGAAAGAGAGTTGCTTAGATAAATAATACAGATATCAATATGAGCT  249
      ||||||||| |||| ||||||||||||||||||||||||| |||||||||
seq2  GTTTAGAAAAAGAG-TGCTTAGATAAATAATACAGATATC-ATATGAGCT  245

seq1  TCTCACAAAGAGTAACTACTGAGTGTCTTGCCACTATCACATAGATTATT  299
      ||||||||||||| ||||||||||||||||||||||||||||||||||||
seq2  TCTCACAAAGAGT-ACTACTGAGTGTCTTGCCACTATCACATAGATTATT  294

seq1  TTGGTAGCTATCGGGGTACATCTAGAAGGATTGTTAAGAGACTTCACCTC  349
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGGTAGCTATCGGGGTACATCTAGAAGGATTGTTAAGAGACTTCACCTC  344

seq1  CTTTTCTCTCTTTTGATAAGTGTCACTTTAGAGTGGCTGTAGACACTTTT  399
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTTCTCTCTTTTGATAAGTGTCACTTTAGAGTGGCTGTAGACACTTTT  394

seq1  GGGAGGAGATTATAATTGGAAAAGCTAATATCAGGAGCCACTTTACAAAG  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGAGGAGATTATAATTGGAAAAGCTAATATCAGGAGCCACTTTACAAAG  444

seq1  TGTTTCTGGTGATAGACTTGGAAAATTGTAGCTTTTCTGCAGGAAGAGGG  499
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTTCTGGTGATAGACTTGGAAAATTGTAGCTTTTCTGCAGGAAGAGGG  494

seq1  AAACACCTTCAGTAGTTGTCATTGTACTGGAGTTCTTTCTTCTCGGAAGC  549
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACACCTTCAGTAGTTGTCATTGTACTGGAGTTCTTTCTTCTCGGAAGC  544

seq1  AACAGCCAGACTCCAAGGCAAGGGGCTCTTTTCCCTTCTAGTGAGTTTTT  599
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACAGCCAGACTCCAAGGCAAGGGGCTCTTTTCCCTTCTAGTGAGTTTTT  594

seq1  TACTTTTTCCTGACTTTCAGTCCTATATCACTTTCCTCACTATATCTTCC  649
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACTTTTTCCTGACTTTCAGTCCTATATCACTTTCCTCACTATATCTTCC  644

seq1  CTCCCTGAAAGCAGGACCAGTGTCTTCATGGGTAGTGAACTTAGCTCAGC  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCCCTGAAAGCAGGACCAGTGTCTTCATGGGTAGTGAACTTAGCTCAGC  694

seq1  CAGGGACAACATTCAAAGCTGGTTTACTGGCGGAGATTCCTTCACGGGTC  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGGACAACATTCAAAGCTGGTTTACTGGCGGAGATTCCTTCACGGGTC  744

seq1  ATGTATGGGTTGCAGTTCACTTGCAGTTTAATTGCTTGAAATAATGCTAG  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTATGGGTTGCAGTTCACTTGCAGTTTAATTGCTTGAAATAATGCTAG  794

seq1  TGTTGTTTCTTCTTTATATTATTCCACTATGTAATGTAGCTTACATTTCA  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTGTTTCTTCTTTATATTATTCCACTATGTAATGTAGCTTACATTTCA  844

seq1  AAGGGACAATTTGATTTCTCTAATGTAGTATTTTCCAAAGAGCTCAAAAA  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGGACAATTTGATTTCTCTAATGTAGTATTTTCCAAAGAGCTCAAAAA  894

seq1  CAGCCACCAATGAGATGGGAAAAGCAGGTTTTTATGTCTCATGCTATTAC  949
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGCCACCAATGAGATGGGAAAAGCAGGTTTTTATGTCTCATGCTATTAC  944

seq1  CCAATGTGTGGACCACATATGGCTTCATAAGATGGGGCTCTCAGACTATT  999
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAATGTGTGGACCACATATGGCTTCATAAGATGGGGCTCTCAGACTATT  994

seq1  GCCTGCAGTGGATTATATCTCCATGTGTATGAGCCTCTGCTTTGAATTGG  1049
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCTGCAGTGGATTATATCTCCATGTGTATGAGCCTCTGCTTTGAATTGG  1044

seq1  TCTTTCTGGAATAACAGCCTACTGCATAATCTCCAGTTAAATTGAGCCAT  1099
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTTCTGGAATAACAGCCTACTGCATAATCTCCAGTTAAATTGAGCCAT  1094

seq1  TAAACAAAATTTCTAAGTCACAAAGCTATTGCATTTCCTGGAATTC  1145
      ||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAACAAAATTTCTAAGTCACAAAGCTATTGCATTTCCTGGAATTC  1140