BAC Information

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BAC

Clone NameB6Ng01-057A14
Chromosome17 (Build37)
Map Location 22,339,149 - 22,511,240
singlet/doubletdoublet
Overlap geneEG240038, EG631624, 6330416L07Rik, Zfp758
Upstream geneEG665669, V1rf1, V1rf2, V1rf4, V1rf3, A830058L05Rik, Zfp54, Zfp51, Zfp53, LOC100042508, Zfp52, BC049807, Zfp760, BC043476, 4930515G13Rik, 2610036F08Rik, LOC624960, 3110048L19Rik, 4930432O21Rik, LOC665820, LOC665825, LOC674332, LOC631010, EG665844, EG210853, LOC671007
Downstream gene1300003B13Rik, EG210876, LOC100042656, EG628185, ENSMUSG00000046088, EG383218, EG433078, LOC100042679, A630033E08Rik, LOC671128, LOC665961, EG434701, LOC665976, LOC100042225, LOC100042234, EG665988, LOC100042248, Zfp40, LOC100042257, LOC100042261, Vmn2r-ps133, EG666002, EG638102
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-057A14.bB6Ng01-057A14.g
ACCDH879023DH879024
length1,1131,082
definitionDH879023|Mus musculus domesticus DNA, BAC clone: B6Ng01-057A14, 5' end.DH879024|Mus musculus domesticus DNA, BAC clone: B6Ng01-057A14, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(22,339,149 - 22,340,279)(22,510,147 - 22,511,240)
sequence
gaattcattatgtattccacactggcatggaacacatgatataaaagcca
tgctgtaccaggattaaacatagaaaccacagttcaaaaactaaataata
agtaacaacaaaattcacacaagcaatagctctttctctatttagaacct
tcctgatttttaaaattcataaacaattgaagactttaatgcaacagtaa
aattacaacaattgtagtaatatattttcttgctctgactattcagtggt
ttttgaactttgatgttttgattaaaagtagataccatgttttgagagat
tacatagaatacaatactggatactcttccaaagaatgaagagaattgta
aaggaaacacagtgaagaacttatgttggtaatcagaatttcctttattc
tgggactctttagatatgtcagagtgtgtatataagcaaataggaggtaa
attcaaagaatgagtcaggaattctacaagaagagtgttcttacccacaa
aaaacagattattgtaattctccaacatcacatccatgtacaatgcctgc
tgagcacagtcaagacattgccattcctcctgtgagaagtccacagccac
atccttgaacgttaactgaccctgtaatagaaaattacctgttcatcata
tgctcctggacaaaagtgttttcctggataaaaatggccaaaagaataag
aggcacaatgtgataaaaatgagtcatgggaaatatttaaggacaaacaa
catcttctagaagtgctatataaatgtatcagaagttaagcattgttgct
ttatgagacaatgcataggatgacatactatactgaggccattcctaagg
tctttctccttcatgaattttctggtgtttctaagaattagcaacagcca
ctatcacttcatttgaaattgtttgtttctataatgaaattgcttccaag
cagacacatgaactatacagcaaacttttatttctaatccttcaaaacta
atactggcttctgaactcacaggatgtgtaaaatatagcaacttatgcat
acattaggcaaatgtccacttacttaaaagaaactgaattaatttttaag
aggttacttaaaa
gaattcattatgcaaaccacattagcatggaactcacgatataaaggcca
tactgtaccagtaataaacatagagaccacaggtgaataaataaataagc
agaaccaaaattctcacaaccaacagctctttctctatttagaactttct
gcctttttaaattcacaaacaagtgagtactttaatgtaatggtaaaatt
aaaatattccaattattaaatgtatggcaatatattttcttgctctgaat
attcaaatttgtttgaacttagaagttttaattaaaagtagatacaatat
ttagagagtttacacagaatgtaacaatggttcgtcatgtaacaaatgga
aagaaatataaaggaaacacaatgaagaagatatgttagtaaccagattt
ttccttattctgggagtctctagacatgtcagagagtttatatatacaca
caggagcttaattcaatgaatgaataaggaattctacaagaagagtattc
ttacccacaaaaaatagattgttgtaattctccaacataacatccatgta
caatgccctctgagcacagtcaagacattcccattcctcctgtgagaagt
ccactgccacatccttgaatgttaacagaccctgtaatggaaagataact
gtttatcatgtgcttctaaacaagtgttttgctaggtaaaaaaaaaagac
ctaaaaaataagaggtaatttgtgataaagatgagtcatggcaaatattc
aagaacaaacatcttctacagtgcaatagaaatatgtcagaagttagcat
tgctgctctattagacaatgtatagaatagcatactatgttggtatattc
ataatgtctctcctcttcatgaatttctgatatttttaagacttaagaca
gataaaggatttgctaccatcacttcatttgatatttgtctctagttgaa
ttctatagtccacagttgcttctaacacccacatggaactacataacaga
ttttatctatttcttgaaaacccattgcttccttctggactttacatgcc
ggaggaatacgtggcacatactcataatgcag
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr17_22339149_22340279
seq2: B6Ng01-057A14.b_50_1162

seq1  GAATTCATTATGTATTCCACACTGGCATGGAACTCATGATATAAAAGCCA  50
      ||||||||||||||||||||||||||||||||| ||||||||||||||||
seq2  GAATTCATTATGTATTCCACACTGGCATGGAACACATGATATAAAAGCCA  50

seq1  TGCTGTACCAGGATTAAACATAGAAACCACAGTTCAAAAACTAAATAATA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTGTACCAGGATTAAACATAGAAACCACAGTTCAAAAACTAAATAATA  100

seq1  AGTAACAACAAAATTCACACAAGCAATAGCTCTTTCTCTATTTAGAACCT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTAACAACAAAATTCACACAAGCAATAGCTCTTTCTCTATTTAGAACCT  150

seq1  TCCTGATTTTTAAAATTCATAAACAATTGAAGACTTTAATGCAACAGTAA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTGATTTTTAAAATTCATAAACAATTGAAGACTTTAATGCAACAGTAA  200

seq1  AATTACAACAATTGTAGTAATATATTTTCTTGCTCTGACTATTCAGTGGT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTACAACAATTGTAGTAATATATTTTCTTGCTCTGACTATTCAGTGGT  250

seq1  TTTTGAACTTTGATGTTTTGATTAAAAGTAGATACCATGTTTTGAGAGAT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTGAACTTTGATGTTTTGATTAAAAGTAGATACCATGTTTTGAGAGAT  300

seq1  TACATAGAATACAATACTGGATACTCTTCCAAAGAATGAAGAGAATTGTA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACATAGAATACAATACTGGATACTCTTCCAAAGAATGAAGAGAATTGTA  350

seq1  AAGGAAACACAGTGAAGAACTTATGTTGGTAATCAGAATTTCCTTTATTC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGAAACACAGTGAAGAACTTATGTTGGTAATCAGAATTTCCTTTATTC  400

seq1  TGGGACTCTTTAGATATGTCAGAGTGTGTATATAAGCAAATAGGAGGTAA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGGACTCTTTAGATATGTCAGAGTGTGTATATAAGCAAATAGGAGGTAA  450

seq1  ATTCAAAGAATGAGTCAGGAATTCTACAAGAAGAGTGTTCTTACCCACAA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTCAAAGAATGAGTCAGGAATTCTACAAGAAGAGTGTTCTTACCCACAA  500

seq1  AAAACAGATTATTGTAATTCTCCAACATCACATCCATGTACAATGCCTGC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAACAGATTATTGTAATTCTCCAACATCACATCCATGTACAATGCCTGC  550

seq1  TGAGCACAGTCAAGACATTGCCATTCCTCCTGTGAGAAGTCCACAGCCAC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGCACAGTCAAGACATTGCCATTCCTCCTGTGAGAAGTCCACAGCCAC  600

seq1  ATCCTTGAACGTTAACTGACCCTGTAATAGAAAATTACCTGTTCATCATA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCCTTGAACGTTAACTGACCCTGTAATAGAAAATTACCTGTTCATCATA  650

seq1  TGCTCCTGGACAAAAGTGTTTTCCTGGATAAAAATGGCCAAAAGAATAAG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTCCTGGACAAAAGTGTTTTCCTGGATAAAAATGGCCAAAAGAATAAG  700

seq1  AGGCACAATGTGATAAAAATGAGTCATGGGAAATATTTAAGGACAAACAA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGCACAATGTGATAAAAATGAGTCATGGGAAATATTTAAGGACAAACAA  750

seq1  CATCTTCTAGAAGTGCTATATAAATGTATCAGAAGTTAAGCATTGTTGCT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATCTTCTAGAAGTGCTATATAAATGTATCAGAAGTTAAGCATTGTTGCT  800

seq1  TTATGAGACAATGCATAGGATGACATACTATACTGAGGCCATTCCTAAGG  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATGAGACAATGCATAGGATGACATACTATACTGAGGCCATTCCTAAGG  850

seq1  TCTTTCTCCTTCATGAATTTTCTGGTGTTTTCTAAGAACTTAGCAACAGC  900
      ||||||||||||||||||||||||||| |||||||||| |||||||||||
seq2  TCTTTCTCCTTCATGAATTTTCTGGTG-TTTCTAAGAA-TTAGCAACAGC  898

seq1  CACTATCACTTCATTTGGAAATTTGTTTGTTTCTATAATTGTAAATTGCT  950
      |||||||||||||||||  || |||||||||||||||||   ||||||||
seq2  CACTATCACTTCATTTG--AAATTGTTTGTTTCTATAAT--GAAATTGCT  944

seq1  TCCAAGCAGACACATGAACTATACAGCAAACTTTTATTTCTAATCCTTCA  1000
      ||||||||||||||||||||||||||||||||||||||||||||||||| 
seq2  TCCAAGCAGACACATGAACTATACAGCAAACTTTTATTTCTAATCCTTC-  993

seq1  AAAACTAATACTGTCTTCTGAACTCAACAGGATGTAGTAAAATATAGCAA  1050
      ||||||||||||| ||||||||||| ||||||||| ||||||||||||||
seq2  AAAACTAATACTGGCTTCTGAACTC-ACAGGATGT-GTAAAATATAGCAA  1041

seq1  CATATGCATACATCAGGCAAATGTACCAACATACATAAAAGAAAACTGAA  1100
      | ||||||||||| ||||||||||  | || ||| |||||| ||||||||
seq2  CTTATGCATACATTAGGCAAATGT--CCACTTACTTAAAAG-AAACTGAA  1088

seq1  ATTTAATTTTTATAAAGGATGTTACTTAAAA  1131
        |||||||||    | || |||||||||||
seq2  --TTAATTTTT----AAGAGGTTACTTAAAA  1113

seq1: chr17_22510147_22511240
seq2: B6Ng01-057A14.g_71_1152 (reverse)

seq1  CTGCATTTATGTGTATGTGCACTGTATTCCTCCGGCCTGTAGAGTTCAGA  50
      ||||| ||||| ||||||||   ||||||||||||| |||| ||| ||||
seq2  CTGCA-TTATGAGTATGTGCCACGTATTCCTCCGGCATGTAAAGTCCAGA  49

seq1  AGAGAGCATTGGGTTTCAAAGAATTGGATTAAAAATCTGTTATGTAGTTC  100
      ||  |||| |||||||  ||||| | |||  |||||||||||||||||||
seq2  AGGAAGCAATGGGTTTTCAAGAAATAGAT--AAAATCTGTTATGTAGTTC  97

seq1  CATGTGGGTGTTAGGAAGCAACTGTGGACTATAGAATTCAAACTAGAGAC  150
      ||||||||||||| ||||||||||||||||||||||||| ||||||||||
seq2  CATGTGGGTGTTA-GAAGCAACTGTGGACTATAGAATTC-AACTAGAGAC  145

seq1  AAATTATCAAATGAAGTGATGGTAGCAAATCCTTTATCTGTTCTTAAGTC  200
      ||| |||||||||||||||||||||||||||||||||||| |||||||||
seq2  AAA-TATCAAATGAAGTGATGGTAGCAAATCCTTTATCTG-TCTTAAGTC  193

seq1  TTAAAAATAATCAGAAAATTCATGAAGAGGAGAGACATTATGAATATAAC  250
      |||||||| ||||| |||||||||||||||||||||||||||||||| ||
seq2  TTAAAAAT-ATCAG-AAATTCATGAAGAGGAGAGACATTATGAATAT-AC  240

seq1  CAACATAGTATGCTATTCTATACATTGTCTAATAAGAGCAGCAATGCTTA  300
      ||||||||||||||||||||||||||||||||| ||||||||||||| ||
seq2  CAACATAGTATGCTATTCTATACATTGTCTAAT-AGAGCAGCAATGC-TA  288

seq1  ACTTCTGACATATTTCTATTGCACTGTAGAAGATGTTTGTTCTTGAATAT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTCTGACATATTTCTATTGCACTGTAGAAGATGTTTGTTCTTGAATAT  338

seq1  TTGCCATGACTCATCTTTATCACAAATTACCTCTTATTTTTTAGGTCTTT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGCCATGACTCATCTTTATCACAAATTACCTCTTATTTTTTAGGTCTTT  388

seq1  TTTTTTTACCTAGCAAAACACTTGTTTAGAAGCACATGATAAACAGTTAT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTTTACCTAGCAAAACACTTGTTTAGAAGCACATGATAAACAGTTAT  438

seq1  CTTTCCATTACAGGGTCTGTTAACATTCAAGGATGTGGCAGTGGACTTCT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTCCATTACAGGGTCTGTTAACATTCAAGGATGTGGCAGTGGACTTCT  488

seq1  CACAGGAGGAATGGGAATGTCTTGACTGTGCTCAGAGGGCATTGTACATG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACAGGAGGAATGGGAATGTCTTGACTGTGCTCAGAGGGCATTGTACATG  538

seq1  GATGTTATGTTGGAGAATTACAACAATCTATTTTTTGTGGGTAAGAATAC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATGTTATGTTGGAGAATTACAACAATCTATTTTTTGTGGGTAAGAATAC  588

seq1  TCTTCTTGTAGAATTCCTTATTCATTCATTGAATTAAGCTCCTGTGTGTA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTCTTGTAGAATTCCTTATTCATTCATTGAATTAAGCTCCTGTGTGTA  638

seq1  TATATAAACTCTCTGACATGTCTAGAGACTCCCAGAATAAGGAAAAATCT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATATAAACTCTCTGACATGTCTAGAGACTCCCAGAATAAGGAAAAATCT  688

seq1  GGTTACTAACATATCTTCTTCATTGTGTTTCCTTTATATTTCTTTCCATT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTTACTAACATATCTTCTTCATTGTGTTTCCTTTATATTTCTTTCCATT  738

seq1  TGTTACATGACGAACCATTGTTACATTCTGTGTAAACTCTCTAAATATTG  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTACATGACGAACCATTGTTACATTCTGTGTAAACTCTCTAAATATTG  788

seq1  TATCTACTTTTAATTAAAACTTCTAAGTTCAAACAAATTTGAATATTCAG  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATCTACTTTTAATTAAAACTTCTAAGTTCAAACAAATTTGAATATTCAG  838

seq1  AGCAAGAAAATATATTGCCATACATTTAATAATTGGAATATTTTAATTTT  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCAAGAAAATATATTGCCATACATTTAATAATTGGAATATTTTAATTTT  888

seq1  ACCATTACATTAAAGTACTCACTTGTTTGTGAATTTAAAAAGGCAGAAAG  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCATTACATTAAAGTACTCACTTGTTTGTGAATTTAAAAAGGCAGAAAG  938

seq1  TTCTAAATAGAGAAAGAGCTGTTGGTTGTGAGAATTTTGGTTCTGCTTAT  1000
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTAAATAGAGAAAGAGCTGTTGGTTGTGAGAATTTTGGTTCTGCTTAT  988

seq1  TTATTTATTCACCTGTGGTCTCTATGTTTATTACTGGTACAGTATGGCCT  1050
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATTTATTCACCTGTGGTCTCTATGTTTATTACTGGTACAGTATGGCCT  1038

seq1  TTATATCGTGAGTTCCATGCTAATGTGGTTTGCTTAATGAATTC  1094
      ||||||||||||||||||||||||||||||||| ||||||||||
seq2  TTATATCGTGAGTTCCATGCTAATGTGGTTTGCATAATGAATTC  1082