BAC Information

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BAC

Clone NameB6Ng01-057C10
Chromosome17 (Build37)
Map Location 53,451,192 - 53,560,899
singlet/doubletdoublet
Overlap geneEG629036, LOC668512, Efhb
Upstream geneLOC672987, EG328839, Kcnh8, LOC668506
Downstream geneLOC668513, Rab5a, 4921523A10Rik, Pcaf, EG628822, Sgol1, EG629065, 4932415M13Rik, Ck-ps1, EG637939, Sult1c2, LOC100043826, LOC100043471, EG668523, LOC629121, Gm324, Sult1c1, LOC100043829, EG435531, Slc5a7, LOC668529, 1700025K24Rik, Trp53-ps
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-057C10.bB6Ng01-057C10.g
ACCDH879106DH879107
length1,057955
definitionDH879106|Mus musculus domesticus DNA, BAC clone: B6Ng01-057C10, 5' end.DH879107|Mus musculus domesticus DNA, BAC clone: B6Ng01-057C10, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(53,451,192 - 53,452,265)(53,559,940 - 53,560,899)
sequence
gaattctttacttaagtgcaatgagggatttcagaacagagttggagttt
aatttaacaaagatttcataggattaatagaaagagaagcacttaagaaa
gaataagacccacacaaagtatatgaacttctcaagaaaatcagtcagtt
gccttcccaatagatatcttatattttaggtggaatctgaacttctatgt
ttaaagacttgctaagaaatttaggagaggacatagggcattccctgcta
tagatgggataggtgataaggtaataccctagattatagaggttgcaaag
aaagtctgaatgttttcatagtaaacaacattgatagtcttgtttgtgag
atttctggaaagtatctgagagagaaataaggccatactcacatgcacat
acacatagaagtcagaagaggggatctgcagatgtcctggatatggagac
atagtcagttgtgagccacctgactgactaggtgctgggaactgaactca
ggtcctctggaactacccttaaacactgagctgcatttccagccctatct
taacattcttcactgaaaacatccaaatacactgggcacccagtgtatct
gcacccaggagctgatgaagttccaaagccatctgtgcataggacctgcc
aggagagaggtgttctcccaggagtgctctcactcctaggctcagaggta
agatagccactttcactccaataactgtccggagtagggccggctaggag
aatgcaggacacagaaagaatggagaagctgggacaggatccttcctgtc
accatctgcatgtagaacctggactgttcacagccctgtgtacataagtt
ccctcagtgggagatggcctcccaggagtgctgacatagacttacagacc
acggaggacagcttcagccagagacagcaagaccatgtaacaccaaagtt
accagatgatgaaatgcaagcctagactttctacagaacaaggctcatgg
cttcatcagaaccaagttctccacacagcaagtcctgaatatctaaccac
ctggaaa
gaattcattcatagaatgctattgccttggagagtgggggctagtatcta
tctaaaaggtgcaaaatcagttggtacctatctatctatctatctatcta
tctatctatctatctatctatctatctatttagagatagggtcttttgta
gtctaggcaggctccccacccactgcgtagcactttctgtcctttgcttc
ttcctctcaaatgccaggattaaaggcctgtgccacatatcttggttctt
ggaatctagccactggctttgtgtgtactacccaaacatcgtgtcaattg
aactgcacctctaggccaagctcaattaatttttaaactactgtaaatat
aatttattcatttagttttggtgttggggattgaacccaggaatttatac
atgatgtcctctgagctgcacccccatttctttctttctttttttttgtt
gttgttgtttttttttttttttttttttgagacagggtttctctgtgtag
tcctggctgtcctggaactcactctgtagtacaggctgaccttgaactca
gaaatccacctgcctctgcctctgcctcccaagtgctgggattaaaggca
tgtgccatcactgcctagcacacccccagttccttgaatgtgcaattttt
gccctcctctctaggaagctcagagcccattgaataatttcagtgtcgac
ttcttgagcatttaaattttttccattattactttgctttgattttcctc
tactcccttttatgcctcagtgtacctggtttctaggcagtttagaaacc
atttaaagtgtatttaaaatgatggttattcttgtaagatctaggggttg
aactcagcaccagtctggcaagagagttctttactcacagagcttttgga
tagacctaccaaccatttaagagggatttaatatcaatacattgctcaga
aagtg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr17_53451192_53452265
seq2: B6Ng01-057C10.b_46_1102

seq1  GAATTCTTTACTTAAGTGCAATGAGGGATTTCAGAACAGAGTTGGAGTTT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTTTACTTAAGTGCAATGAGGGATTTCAGAACAGAGTTGGAGTTT  50

seq1  AATTTAACAAAGATTTCATAGGATTAATAGAAAGAGAAGCACTTAAGAAA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTTAACAAAGATTTCATAGGATTAATAGAAAGAGAAGCACTTAAGAAA  100

seq1  GAATAAGACCCACACAAAGTATATGAACTTCTCAAGAAAATCAGTCAGTT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATAAGACCCACACAAAGTATATGAACTTCTCAAGAAAATCAGTCAGTT  150

seq1  GCCTTCCCAATAGATATCTTATATTTTAGGTGGAATCTGAACTTCTATGT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCTTCCCAATAGATATCTTATATTTTAGGTGGAATCTGAACTTCTATGT  200

seq1  TTAAAGACTTGCTAAGAAATTTAGGAGAGGACATAGGGCATTCCCTGCTA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAAAGACTTGCTAAGAAATTTAGGAGAGGACATAGGGCATTCCCTGCTA  250

seq1  TAGATGGGATAGGTGATAAGGTAATACCCTAGATTATAGAGGTTGCAAAG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGATGGGATAGGTGATAAGGTAATACCCTAGATTATAGAGGTTGCAAAG  300

seq1  AAAGTCTGAATGTTTTCATAGTAAACAACATTGATAGTCTTGTTTGTGAG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGTCTGAATGTTTTCATAGTAAACAACATTGATAGTCTTGTTTGTGAG  350

seq1  ATTTCTGGAAAGTATCTGAGAGAGAAATAAGGCCATACTCACATGCACAT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTCTGGAAAGTATCTGAGAGAGAAATAAGGCCATACTCACATGCACAT  400

seq1  ACACATAGAAGTCAGAAGAGGGGATCTGCAGATGTCCTGGATATGGAGAC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACATAGAAGTCAGAAGAGGGGATCTGCAGATGTCCTGGATATGGAGAC  450

seq1  ATAGTCAGTTGTGAGCCACCTGACTGACTAGGTGCTGGGAACTGAACTCA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAGTCAGTTGTGAGCCACCTGACTGACTAGGTGCTGGGAACTGAACTCA  500

seq1  GGTCCTCTGGAACTACCCTTAAACACTGAGCTGCATTTCCAGCCCTATCT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTCCTCTGGAACTACCCTTAAACACTGAGCTGCATTTCCAGCCCTATCT  550

seq1  TAACATTCTTCACTGAAAACATCCAAATACACTGGGCACCCAGTGTATCT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAACATTCTTCACTGAAAACATCCAAATACACTGGGCACCCAGTGTATCT  600

seq1  GCACCCAGGAGCTGATGAAGTTCCAAAGCCATCTGTGCATAGGACCTGCC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCACCCAGGAGCTGATGAAGTTCCAAAGCCATCTGTGCATAGGACCTGCC  650

seq1  AGGAGAGAGGTGTTCTCCCAGGAGTGCTCTCACTCCTAGGCTCAGAGGTA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGAGAGAGGTGTTCTCCCAGGAGTGCTCTCACTCCTAGGCTCAGAGGTA  700

seq1  AGATAGCCACTTTCACTCCAATAACTGTCCGGAGTAGGGCCGGCTAGGAG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATAGCCACTTTCACTCCAATAACTGTCCGGAGTAGGGCCGGCTAGGAG  750

seq1  AATGCAGGACACAGAAAGAATGGAGAAGCTGGGACAGGATCCTTCCTGTC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGCAGGACACAGAAAGAATGGAGAAGCTGGGACAGGATCCTTCCTGTC  800

seq1  ACCATCTGCATGTAGAACCTGGACTGTTCCACAGCCCTGTGTACATAAGT  850
      |||||||||||||||||||||||||||| |||||||||||||||||||||
seq2  ACCATCTGCATGTAGAACCTGGACTGTT-CACAGCCCTGTGTACATAAGT  849

seq1  TCCCTCAGGTGGGAGATGGCCTCCCAGGAGTGCTGACATAGACTTACAGA  900
      ||||||| ||||||||||||||||||||||||||||||||||||||||||
seq2  TCCCTCA-GTGGGAGATGGCCTCCCAGGAGTGCTGACATAGACTTACAGA  898

seq1  CCCACGGGAGGGACCAGCTCCAGCCAGAGACAGCAAGACCATGTAACACC  950
       |||| |||||   ||||| ||||||||||||||||||||||||||||||
seq2  -CCAC-GGAGG--ACAGCTTCAGCCAGAGACAGCAAGACCATGTAACACC  944

seq1  AAAGATAACCAGATGATGAAAGGCAAGCCCAAGAACTTTACCAACAGAAA  1000
      |||| | |||||||||||||| ||||||| |   |||||  | |||||| 
seq2  AAAG-TTACCAGATGATGAAATGCAAGCCTA--GACTTT--CTACAGAA-  988

seq1  CCAAGGCTACATGGCATCATCAGAACCCAGTTCTCCCACCACAGCAAGTC  1050
       ||||||| |||||| ||||||||||| ||||||||   |||||||||||
seq2  -CAAGGCT-CATGGCTTCATCAGAACCAAGTTCTCC--ACACAGCAAGTC  1034

seq1  CTGAATATCCTAACACACTGGAAA  1074
      |||||||| |||||   |||||||
seq2  CTGAATAT-CTAACCACCTGGAAA  1057

seq1: chr17_53559940_53560899
seq2: B6Ng01-057C10.g_70_1024 (reverse)

seq1  CACATTCTGAGC-ATGTATTGATATTAAATTCACTCTAAAATGGTTGGTA  49
      ||| |||||||| |||||||||||||||| || |||| ||||||||||||
seq2  CACTTTCTGAGCAATGTATTGATATTAAA-TCCCTCTTAAATGGTTGGTA  49

seq1  GGTCTATCCAAAGAGCTCTGTGAGTAAAGGAACTCTCTTGCCAGACCTGG  99
      |||||||||||| ||||||||||||||| |||||||||||||||| ||||
seq2  GGTCTATCCAAA-AGCTCTGTGAGTAAA-GAACTCTCTTGCCAGA-CTGG  96

seq1  TGCCTGAGTTCAATCCCTGGATCCTACAAGAATAACCATCATTTTAAATA  149
      || |||||||||| |||| |||| ||||||||||||||||||||||||||
seq2  TG-CTGAGTTCAACCCCTAGATCTTACAAGAATAACCATCATTTTAAATA  145

seq1  CACTTTAAATGGTTTCTAAACTGCCTAGAAAACCAGGTACACTGAGGCAT  199
      |||||||||||||||||||||||||||| |||||||||||||||||||||
seq2  CACTTTAAATGGTTTCTAAACTGCCTAG-AAACCAGGTACACTGAGGCAT  194

seq1  AAAAGGGAGTAGAGGAAAATCAAAGCAAAGTAATAATGGAAAAAATTTAA  249
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAGGGAGTAGAGGAAAATCAAAGCAAAGTAATAATGGAAAAAATTTAA  244

seq1  ATGCTCAAGAAGTCGACACTGAAATTATTCAATGGGCTCTGAGCTTCCTA  299
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGCTCAAGAAGTCGACACTGAAATTATTCAATGGGCTCTGAGCTTCCTA  294

seq1  GAGAGGAGGGCAAAAATTGCACATTCAAGGAACTGGGGGTGTGCTAGGCA  349
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGAGGAGGGCAAAAATTGCACATTCAAGGAACTGGGGGTGTGCTAGGCA  344

seq1  GTGATGGCACATGCCTTTAATCCCAGCACTTGGGAGGCAGAGGCAGAGGC  399
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGATGGCACATGCCTTTAATCCCAGCACTTGGGAGGCAGAGGCAGAGGC  394

seq1  AGGTGGATTTCTGAGTTCAAGGTCAGCCTGTACTACAGAGTGAGTTCCAG  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGTGGATTTCTGAGTTCAAGGTCAGCCTGTACTACAGAGTGAGTTCCAG  444

seq1  GACAGCCAGGACTACACAGAGAAACCCTGTCTCAAAAAAAAAAAAAAAAA  499
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACAGCCAGGACTACACAGAGAAACCCTGTCTCAAAAAAAAAAAAAAAAA  494

seq1  AAAACAACAACAACAAAAAAAAAGAAAGAAAGAAATGGGGGTGCAGCTCA  549
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAACAACAACAACAAAAAAAAAGAAAGAAAGAAATGGGGGTGCAGCTCA  544

seq1  GAGGACATCATGTATAAATTCCTGGGTTCAATCCCCAACACCAAAACTAA  599
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGGACATCATGTATAAATTCCTGGGTTCAATCCCCAACACCAAAACTAA  594

seq1  ATGAATAAATTATATTTACAGTAGTTTAAAAATTAATTGAGCTTGGCCTA  649
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGAATAAATTATATTTACAGTAGTTTAAAAATTAATTGAGCTTGGCCTA  644

seq1  GAGGTGCAGTTCAATTGACACGATGTTTGGGTAGTACACACAAAGCCAGT  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGGTGCAGTTCAATTGACACGATGTTTGGGTAGTACACACAAAGCCAGT  694

seq1  GGCTAGATTCCAAGAACCAAGATATGTGGCACAGGCCTTTAATCCTGGCA  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCTAGATTCCAAGAACCAAGATATGTGGCACAGGCCTTTAATCCTGGCA  744

seq1  TTTGAGAGGAAGAAGCAAAGGACAGAAAGTGCTACGCAGTGGGTGGGGAG  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGAGAGGAAGAAGCAAAGGACAGAAAGTGCTACGCAGTGGGTGGGGAG  794

seq1  CCTGCCTAGACTACAAAAGACCCTATCTCTAAATAGATAGATAGATAGAT  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGCCTAGACTACAAAAGACCCTATCTCTAAATAGATAGATAGATAGAT  844

seq1  AGATAGATAGATAGATAGATAGATAGATAGATAGGTACCAACTGATTTTG  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATAGATAGATAGATAGATAGATAGATAGATAGGTACCAACTGATTTTG  894

seq1  CACCTTTTAGATAGATACTAGCCCCCACTCTCCAAGGCAATAGCATTCTA  949
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACCTTTTAGATAGATACTAGCCCCCACTCTCCAAGGCAATAGCATTCTA  944

seq1  TGAATGAATTC  960
      |||||||||||
seq2  TGAATGAATTC  955