BAC Information

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BAC

Clone NameB6Ng01-057E10
Chromosome17 (Build37)
Map Location 27,214,732 - 27,304,933
singlet/doubletdoublet
Overlap geneItpr3, 2900010M23Rik, Ihpk3
Upstream geneDecr2, Nme4, EG666609, Tmem8, Mrpl28, Axin1, Pdia2, Arhgdig, Rgs11, Itfg3, LOC100042643, Luc7l, EG383229, EG240055, C230078M08Rik, Dusp1, EG666668, Ergic1, Atp6v0e, A930001N09Rik, Bnip1, Nkx2-5, Kifc1, Phf1, Cuta, Syngap1, Zbtb9, Bak1, Ggnbp1
Downstream geneLemd2, LOC100042713, ENSMUSG00000073430, Grm4, LOC677010, Hmga1, AI413582, Nudt3, Rps10, Pacsin1, Spdef, LOC100042744, D17Wsu92e, EG666682, Snrpc, F830021D11Rik, Taf11, Anks1, Tcp11, 4930526A20Rik, Scube3
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-057E10.bB6Ng01-057E10.g
ACCDH879194DH879195
length969656
definitionDH879194|Mus musculus domesticus DNA, BAC clone: B6Ng01-057E10, 5' end.DH879195|Mus musculus domesticus DNA, BAC clone: B6Ng01-057E10, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(27,214,732 - 27,215,705)(27,304,278 - 27,304,933)
sequence
gaattccacggctgcatagctgcttgcctgacatttgtgagaccctgggt
tcaactcctacaagttcatcctctcctcttaaatatttactttattacta
ctgttattggcttatttacttaatttttatgagacagaatctcattatgt
agtcttggctggcctggaactttctatgtaaaccaggctggctttaactc
acagagagccacgggcctctcctgccacgtgctgggatttaagtgtgtgc
ttctatggctttgcttttgtctatgaggcaaaactccatgcatgtctgtg
cactatgtgtgtgcagtccccttggaggccagaagagggcgccagagcac
ccggagctggagttccagattgagactcagtcctagagtccccgcaagag
cagccagagctcataactgccgagccatctctccaggctctgttttctct
ttttcatttaaaaattcctttttaaaaatgtgtcccatatcttggaaaat
gatgtgaatattagtgttttttaaaattccatggttttaattatttagaa
aaaattacttatttttaattgtggtgaaatatacttaacaaaacactctt
cctcgctggggttggagagacggctatgcagttaagagcactggctgctc
tacaaagggccggatttggctttctagcacccacactggggagtcaacat
ggtgtgatttcagctccaggggcctgcaagtctctcctagcctctgaagg
cacccacggtcttgtgcacaggtccataccacgattaacagtaaaaaaac
aaatctcttaaagaaaaagaaagatccccccctctctctctcactcacac
acacacacacacacacacacactgagaaggtcagggtggccttgaactcc
cgacctttcatcccactgtcctcacgtatccagcgttcactctgtggtgg
tctgaggtgcttgggcagc
gaattctctttcctaccttctcctactcccccaaattttccccttcttcc
tagtccctgcccaccttcctcgtctttcctctctcctctttcccctccct
cccagacccctggccccactccagagctgtggataccagctgacagctgg
gcattcaggcctagagggtcaggtggtttcccttacccaggccactgaca
gcctagatctggacgggaaactccacccgggccccagcgggagaactgag
ctgggccagaccttttcctgtgcttgcagacagaggagggcactgagaga
caagagcccctactgcacactccctgataccccccagaaagaggctctgg
tgagtgcaaccttgatgtaggatggggaagaaccatcttactgagccctg
gatggttccagggtgagggacagagggtgtcaaggccataggccagctcc
catggtggggtagcttccctacagactggttgggagtcataggggatata
ggcctgttggaggtgcctgtgacttggaatttacctgtgcgtgcgtgtgt
gtgtgtgtgtgtgtgtgtgtgtgcatgcttgtgcagctggggtgtgcagg
ggctgggacaggcagcaatttagagatatgggcatatgtccatggtccca
tttctt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr17_27214732_27215705
seq2: B6Ng01-057E10.b_48_1016

seq1  GAATTCCACGGCTGCATAGCTGCTTGCCTGACATTTGTGAGACCCTGGGT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCACGGCTGCATAGCTGCTTGCCTGACATTTGTGAGACCCTGGGT  50

seq1  TCAACTCCTACAAGTTCATCCTCTCCTCTTAAATATTTACTTTATTACTA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAACTCCTACAAGTTCATCCTCTCCTCTTAAATATTTACTTTATTACTA  100

seq1  CTGTTATTGGCTTATTTACTTAATTTTTATGAGACAGAATCTCATTATGT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTTATTGGCTTATTTACTTAATTTTTATGAGACAGAATCTCATTATGT  150

seq1  AGTCTTGGCTGGCCTGGAACTTTCTATGTAAACCAGGCTGGCTTTAACTC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTCTTGGCTGGCCTGGAACTTTCTATGTAAACCAGGCTGGCTTTAACTC  200

seq1  ACAGAGAGCCACGGGCCTCTCCTGCCACGTGCTGGGATTTAAGTGTGTGC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGAGAGCCACGGGCCTCTCCTGCCACGTGCTGGGATTTAAGTGTGTGC  250

seq1  TTCTATGGCTTTGCTTTTGTCTATGAGGCAAAACTCCATGCATGTCTGTG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTATGGCTTTGCTTTTGTCTATGAGGCAAAACTCCATGCATGTCTGTG  300

seq1  CACTATGTGTGTGCAGTCCCCTTGGAGGCCAGAAGAGGGCGCCAGAGCAC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACTATGTGTGTGCAGTCCCCTTGGAGGCCAGAAGAGGGCGCCAGAGCAC  350

seq1  CCGGAGCTGGAGTTCCAGATTGAGACTCAGTCCTAGAGTCCCCGCAAGAG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCGGAGCTGGAGTTCCAGATTGAGACTCAGTCCTAGAGTCCCCGCAAGAG  400

seq1  CAGCCAGAGCTCATAACTGCCGAGCCATCTCTCCAGGCTCTGTTTTCTCT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGCCAGAGCTCATAACTGCCGAGCCATCTCTCCAGGCTCTGTTTTCTCT  450

seq1  TTTTCATTTAAAAATTCCTTTTTAAAAATGTGTCCCATATCTTGGAAAAT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTCATTTAAAAATTCCTTTTTAAAAATGTGTCCCATATCTTGGAAAAT  500

seq1  GATGTGAATATTAGTGTTTTTTAAAATTCCATGGTTTTAATTATTTAGAA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATGTGAATATTAGTGTTTTTTAAAATTCCATGGTTTTAATTATTTAGAA  550

seq1  AAAATTACTTATTTTTAATTGTGGTGAAATATACTTAACAAAACACTCTT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAATTACTTATTTTTAATTGTGGTGAAATATACTTAACAAAACACTCTT  600

seq1  CCTCGCTGGGGTTGGAGAGACGGCTATGCAGTTAAGAGCACTGGCTGCTC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTCGCTGGGGTTGGAGAGACGGCTATGCAGTTAAGAGCACTGGCTGCTC  650

seq1  TACAAAGGGCCGGATTTGGCTTTCTAGCACCCACACTGGGGAGTCAACAT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACAAAGGGCCGGATTTGGCTTTCTAGCACCCACACTGGGGAGTCAACAT  700

seq1  GGTGTGATTTCAGCTCCAGGGGCCTGCAAGTCTCTCCTAGCCTCTGAAGG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTGTGATTTCAGCTCCAGGGGCCTGCAAGTCTCTCCTAGCCTCTGAAGG  750

seq1  CACCCACGGTCTTGTGCACAGGTCCATACCACGATTAACAGTAAAAAAAC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACCCACGGTCTTGTGCACAGGTCCATACCACGATTAACAGTAAAAAAAC  800

seq1  AAATCTCTTAAAGAAAAAGAAAGATCCCCCCCTCTCTCTCTCACTCACAC  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATCTCTTAAAGAAAAAGAAAGATCCCCCCCTCTCTCTCTCACTCACAC  850

seq1  ACACACACACACACACACACACTGAGAAGGTCAGGGTGGCCTTGAACTCC  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACACACACACACACACACACTGAGAAGGTCAGGGTGGCCTTGAACTCC  900

seq1  CGACCTTTCATTCCCACCTGTCCTCACCGTTATCCAGCGTTCATCTCTGT  950
      |||||||||| ||||| ||||||||||   ||||||||||||| ||||||
seq2  CGACCTTTCA-TCCCA-CTGTCCTCAC--GTATCCAGCGTTCA-CTCTGT  945

seq1  GGTGTTCTGAGGTCCTTGTGCAGC  974
      |||| |||||||| |||| |||||
seq2  GGTGGTCTGAGGTGCTTGGGCAGC  969

seq1: chr17_27304278_27304933
seq2: B6Ng01-057E10.g_67_722 (reverse)

seq1  AAGAAATGGGA-CATGGACATATGCCCATATCTCTAAATTGCTGCCTGTC  49
      ||||||||||| ||||||||||||||||||||||||||||||||||||||
seq2  AAGAAATGGGACCATGGACATATGCCCATATCTCTAAATTGCTGCCTGTC  50

seq1  CCAGCCCCTGCACACCCCAGCCTGCACAAGCATGCACACACACACACACA  99
      |||||||||||||||||||| |||||||||||||||||||||||||||||
seq2  CCAGCCCCTGCACACCCCAG-CTGCACAAGCATGCACACACACACACACA  99

seq1  CACACACACACACGCACGCACAGGTAAATTCCAAGTCACAGGCACCTCCA  149
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACACACACACACGCACGCACAGGTAAATTCCAAGTCACAGGCACCTCCA  149

seq1  ACAGGCCTATATCCCCTATGACTCCCAACCAGTCTGTAGGGAAGCTACCC  199
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGGCCTATATCCCCTATGACTCCCAACCAGTCTGTAGGGAAGCTACCC  199

seq1  CACCATGGGAGCTGGCCTATGGCCTTGACACCCTCTGTCCCTCACCCTGG  249
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACCATGGGAGCTGGCCTATGGCCTTGACACCCTCTGTCCCTCACCCTGG  249

seq1  AACCATCCAGGGCTCAGTAAGATGGTTCTTCCCCATCCTACATCAAGGTT  299
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACCATCCAGGGCTCAGTAAGATGGTTCTTCCCCATCCTACATCAAGGTT  299

seq1  GCACTCACCAGAGCCTCTTTCTGGGGGGTATCAGGGAGTGTGCAGTAGGG  349
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCACTCACCAGAGCCTCTTTCTGGGGGGTATCAGGGAGTGTGCAGTAGGG  349

seq1  GCTCTTGTCTCTCAGTGCCCTCCTCTGTCTGCAAGCACAGGAAAAGGTCT  399
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTCTTGTCTCTCAGTGCCCTCCTCTGTCTGCAAGCACAGGAAAAGGTCT  399

seq1  GGCCCAGCTCAGTTCTCCCGCTGGGGCCCGGGTGGAGTTTCCCGTCCAGA  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCCCAGCTCAGTTCTCCCGCTGGGGCCCGGGTGGAGTTTCCCGTCCAGA  449

seq1  TCTAGGCTGTCAGTGGCCTGGGTAAGGGAAACCACCTGACCCTCTAGGCC  499
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTAGGCTGTCAGTGGCCTGGGTAAGGGAAACCACCTGACCCTCTAGGCC  499

seq1  TGAATGCCCAGCTGTCAGCTGGTATCCACAGCTCTGGAGTGGGGCCAGGG  549
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAATGCCCAGCTGTCAGCTGGTATCCACAGCTCTGGAGTGGGGCCAGGG  549

seq1  GTCTGGGAGGGAGGGGAAAGAGGAGAGAGGAAAGACGAGGAAGGTGGGCA  599
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCTGGGAGGGAGGGGAAAGAGGAGAGAGGAAAGACGAGGAAGGTGGGCA  599

seq1  GGGACTAGGAAGAAGGGGAAAATTTGGGGGAGTAGGAGAAGGTAGGAAAG  649
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGACTAGGAAGAAGGGGAAAATTTGGGGGAGTAGGAGAAGGTAGGAAAG  649

seq1  AGAATTC  656
      |||||||
seq2  AGAATTC  656