BAC Information

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BAC

Clone NameB6Ng01-057G04
Chromosome17 (Build37)
Map Location 49,364,720 - 49,499,626
singlet/doubletdoublet
Overlap genenone
Upstream geneTrem1, Trem3, Treml4, Treml2, B430306N03Rik, Trem2, Treml1, Nfya, AI314976, Apobec2, Bzrpl1, Unc5cl, Lrfn2, 1700008K24Rik, LOC672972
Downstream geneMocs1, Daam2, Kif6, EG668470, Rftn1, EG668475, EG628747, LOC100043818, Dazl
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-057G04.bB6Ng01-057G04.g
ACCDH879270DH879271
length1,065970
definitionDH879270|Mus musculus domesticus DNA, BAC clone: B6Ng01-057G04, 5' end.DH879271|Mus musculus domesticus DNA, BAC clone: B6Ng01-057G04, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(49,498,563 - 49,499,626)(49,364,720 - 49,365,690)
sequence
gaattctcctgacaaatggagattctccagatacttaaaagttacactca
tataagaatttagcaaggcctaagagataggggggttgtgatattgcatt
attcatgaggtctgctaagagcagaaccccctggtgctaggcttcacaag
gttcaaaggtataacactagagtgtgaaatccttacctgtcactaagctg
gccctaggcaggactgctttatctttactgtaaacatctacctggttcct
gtaaatccttttgaagtaattcctttgttttctatcaggtaacttcaatg
tattttgcctgctaccctttgtattttctgtactatataagattgatgtt
cactttgtgacattacattcagattctacacaatcttgcgcattggtctg
tctgtcacccgcccacactttgcccacctgccccagagacccgttccacg
cagacaaagggacccagagggtcagcggcaggtgtcttatcatggcagta
gagaaataagacacagatcatgactgtctttctcttcaacatagaacttc
agtttgcttggagagaaaacaggagtgtcagtatcagaaaaggctagggt
atagagggctgaaagggttattttttcaggatattcaaaattaatatcct
ctaaacttttgtcaatgccctatttttaatatttctttttaacttagata
tggttttgaaaagtattgaaaaattattgaaaagcattgaaatttagaaa
attatccagtttatcacttatttatatttaaaaatttttaatgataaaag
gctcagctcttaagagtacttgctgctcttgcagagtttctagtatccac
atggtggctcacaaccatcttgtaactccagcttcagaggatgccctctc
aggcctctgtgggtactgcatgcatgtggtgcatatacttgcatcacact
atacacaggtaaagtggaatgctcattcagatcttaatttcattgcctaa
acttaagttaattaaataatccagattccccatttgagaaaacaggaatg
ccaaaattacttatt
gaattctgccctgcagtctgaatgttgcaccatgtaaagacatgcagaaa
cagagcagctccagtggaaatttccattgaagttggcagaggttgttctt
cctaggaaattctcttggacaagaggatgtaaatatttttgttcacgtag
aatcttaaagagaacactgcagttagaaatagcccggggactccactttc
tctggaaagttctacaggtttggaagatttcgttggctgtttctttttct
taagctcatctggaattcactatgaacttggtgatgaccttgtatttata
ttctcctgcccccacttcctaacttgtaggattgcaggcctatgccacca
tttatgttgtgctgagatacaaaccagggcttggtgagtacttggcaaga
attgcaactgaggttccgcctacacaaacggctcctggacgccagctctt
ggacagacttcctgaatgtaactactgctctgtagacagaggcatgtttc
catttcacgaaactgaaatatcacccaggggatatgagctgctctcaagc
acttccaacttttcagtgctgcttgaaggtgacctacggccacagcagat
ttgaaggacacaagcatcttctagtgactctgcttgctgctgacttgttc
ccattcggctgggtaagagttttctccaccccacagctctgttaaaatgc
gttgagtggcgtcaatacaagcagcacatgtattgacgtcacacgccact
actccagtcatctttagaactttctcagattgccactggacatgttcctg
gactgctgccctgagattccctactgactcttcgagcgttcccaccccat
tgggaggcagcttcagagaggggcatctttgttgtgtatgcacatattca
agtagatgcacatgtgtgtgccatacttccacattttttgtgtgtggttg
tggggtaagtggatcatgcc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr17_49498563_49499626
seq2: B6Ng01-057G04.b_49_1105 (reverse)

seq1  ATTTTGGCTTCACTGGTTTTCTC-AATGGGGAATACTTGA-TATTTCTAA  48
      |||||||| |  || |||||||| |||||||||| || || |||||   |
seq2  ATTTTGGCATTCCT-GTTTTCTCAAATGGGGAAT-CTGGATTATTT---A  45

seq1  ATTAACTTAAGTTCTAGGCAATAGAATTAAAGATCATGAATGAGCAATCC  98
      ||||||||||||| |||||||| ||| | |||||| |||||||||| |||
seq2  ATTAACTTAAGTT-TAGGCAAT-GAAATTAAGATC-TGAATGAGCATTCC  92

seq1  ACTTTAACTGTGTGTATGTGTGTATGCAAGTATATGCACCACATGCATGC  148
      |||||| |||||| || ||||| |||||||||||||||||||||||||||
seq2  ACTTTACCTGTGTATA-GTGTG-ATGCAAGTATATGCACCACATGCATGC  140

seq1  AGTACCCACAGAGGCCTGAAGAGGGCATCCTCTGAAGCTGGAGTTAC-AG  197
      |||||||||||||||||| |||||||||||||||||||||||||||| ||
seq2  AGTACCCACAGAGGCCTG-AGAGGGCATCCTCTGAAGCTGGAGTTACAAG  189

seq1  ATGGTTGTGAGCCACCATGTGGATACTAGGAACTCTGCAAGAGCAGCAAG  247
      ||||||||||||||||||||||||||||| ||||||||||||||||||||
seq2  ATGGTTGTGAGCCACCATGTGGATACTAGAAACTCTGCAAGAGCAGCAAG  239

seq1  TACTCTTAAGAGCTGAGCC-TTTATCATTAAAAATTTTTAAATATAAATA  296
      ||||||||||||||||||| ||||||||||||||||||||||||||||||
seq2  TACTCTTAAGAGCTGAGCCTTTTATCATTAAAAATTTTTAAATATAAATA  289

seq1  AGTGATAAACTGGATAATTTTCTAAATTTCAATGCTTTTCAATAATTTTT  346
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTGATAAACTGGATAATTTTCTAAATTTCAATGCTTTTCAATAATTTTT  339

seq1  CAATACTTTTCAAAACCATATCTAAGTTAAAAAGAAATATTAAAAATAGG  396
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAATACTTTTCAAAACCATATCTAAGTTAAAAAGAAATATTAAAAATAGG  389

seq1  GCATTGACAAAAGTTTAGAGGATATTAATTTTGAATATCCTGAAAAAATA  446
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCATTGACAAAAGTTTAGAGGATATTAATTTTGAATATCCTGAAAAAATA  439

seq1  ACCCTTTCAGCCCTCTATACCCTAGCCTTTTCTGATACTGACACTCCTGT  496
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCCTTTCAGCCCTCTATACCCTAGCCTTTTCTGATACTGACACTCCTGT  489

seq1  TTTCTCTCCAAGCAAACTGAAGTTCTATGTTGAAGAGAAAGACAGTCATG  546
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCTCTCCAAGCAAACTGAAGTTCTATGTTGAAGAGAAAGACAGTCATG  539

seq1  ATCTGTGTCTTATTTCTCTACTGCCATGATAAGACACCTGCCGCTGACCC  596
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTGTGTCTTATTTCTCTACTGCCATGATAAGACACCTGCCGCTGACCC  589

seq1  TCTGGGTCCCTTTGTCTGCGTGGAACGGGTCTCTGGGGCAGGTGGGCAAA  646
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGGGTCCCTTTGTCTGCGTGGAACGGGTCTCTGGGGCAGGTGGGCAAA  639

seq1  GTGTGGGCGGGTGACAGACAGACCAATGCGCAAGATTGTGTAGAATCTGA  696
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTGGGCGGGTGACAGACAGACCAATGCGCAAGATTGTGTAGAATCTGA  689

seq1  ATGTAATGTCACAAAGTGAACATCAATCTTATATAGTACAGAAAATACAA  746
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTAATGTCACAAAGTGAACATCAATCTTATATAGTACAGAAAATACAA  739

seq1  AGGGTAGCAGGCAAAATACATTGAAGTTACCTGATAGAAAACAAAGGAAT  796
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGGTAGCAGGCAAAATACATTGAAGTTACCTGATAGAAAACAAAGGAAT  789

seq1  TACTTCAAAAGGATTTACAGGAACCAGGTAGATGTTTACAGTAAAGATAA  846
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACTTCAAAAGGATTTACAGGAACCAGGTAGATGTTTACAGTAAAGATAA  839

seq1  AGCAGTCCTGCCTAGGGCCAGCTTAGTGACAGGTAAGGATTTCACACTCT  896
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCAGTCCTGCCTAGGGCCAGCTTAGTGACAGGTAAGGATTTCACACTCT  889

seq1  AGTGTTATACCTTTGAACCTTGTGAAGCCTAGCACCAGGGGGTTCTGCTC  946
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTGTTATACCTTTGAACCTTGTGAAGCCTAGCACCAGGGGGTTCTGCTC  939

seq1  TTAGCAGACCTCATGAATAATGCAATATCACAACCCCCCTATCTCTTAGG  996
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAGCAGACCTCATGAATAATGCAATATCACAACCCCCCTATCTCTTAGG  989

seq1  CCTTGCTAAATTCTTATATGAGTGTAACTTTTAAGTATCTGGAGAATCTC  1046
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTGCTAAATTCTTATATGAGTGTAACTTTTAAGTATCTGGAGAATCTC  1039

seq1  CATTTGTCAGGAGAATTC  1064
      ||||||||||||||||||
seq2  CATTTGTCAGGAGAATTC  1057

seq1: chr17_49364720_49365690
seq2: B6Ng01-057G04.g_71_1040

seq1  GAATTCTGCCCTGCAGTCTGAATGTTGCACCATGTAAAGACATGCAGAAA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTGCCCTGCAGTCTGAATGTTGCACCATGTAAAGACATGCAGAAA  50

seq1  CAGAGCAGCTCCAGTGGAAATTTCCATTGAAGTTGGCAGAGGTTGTTCTT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGAGCAGCTCCAGTGGAAATTTCCATTGAAGTTGGCAGAGGTTGTTCTT  100

seq1  CCTAGGAAATTCTCTTGGACAAGAGGATGTAAATATTTTTGTTCACGTAG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTAGGAAATTCTCTTGGACAAGAGGATGTAAATATTTTTGTTCACGTAG  150

seq1  AATCTTAAAGAGAACACTGCAGTTAGAAATAGCCCGGGGACTCCACTTTC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATCTTAAAGAGAACACTGCAGTTAGAAATAGCCCGGGGACTCCACTTTC  200

seq1  TCTGGAAAGTTCTACAGGTTTGGAAGATTTCGTTGGCTGTTTCTTTTTCT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGGAAAGTTCTACAGGTTTGGAAGATTTCGTTGGCTGTTTCTTTTTCT  250

seq1  TAAGCTCATCTGGAATTCACTATGAACTTGGTGATGACCTTGTATTTATA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAGCTCATCTGGAATTCACTATGAACTTGGTGATGACCTTGTATTTATA  300

seq1  TTCTCCTGCCCCCACTTCCTAACTTGTAGGATTGCAGGCCTATGCCACCA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTCCTGCCCCCACTTCCTAACTTGTAGGATTGCAGGCCTATGCCACCA  350

seq1  TTTATGTTGTGCTGAGATACAAACCAGGGCTTGGTGAGTACTTGGCAAGA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTATGTTGTGCTGAGATACAAACCAGGGCTTGGTGAGTACTTGGCAAGA  400

seq1  ATTGCAACTGAGGTTCCGCCTACACAAACGGCTCCTGGACGCCAGCTCTT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTGCAACTGAGGTTCCGCCTACACAAACGGCTCCTGGACGCCAGCTCTT  450

seq1  GGACAGACTTCCTGAATGTAACTACTGCTCTGTAGACAGAGGCATGTTTC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGACAGACTTCCTGAATGTAACTACTGCTCTGTAGACAGAGGCATGTTTC  500

seq1  CATTTCACGAAACTGAAATATCACCCAGGGGATATGAGCTGCTCTCAAGC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTTCACGAAACTGAAATATCACCCAGGGGATATGAGCTGCTCTCAAGC  550

seq1  ACTTCCAACTTTTCAGTGCTGCTTGAAGGTGACCTACGGCCACAGCAGAT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTCCAACTTTTCAGTGCTGCTTGAAGGTGACCTACGGCCACAGCAGAT  600

seq1  TTGAAGGACACAAGCATCTTCTAGTGACTCTGCTTGCTGCTGACTTGTTC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGAAGGACACAAGCATCTTCTAGTGACTCTGCTTGCTGCTGACTTGTTC  650

seq1  CCATTCGGCTGGGTAAGAGTTTTCTCCACCCCACAGCTCTGTTAAAATGC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCATTCGGCTGGGTAAGAGTTTTCTCCACCCCACAGCTCTGTTAAAATGC  700

seq1  GTTGAGTGGCGTCAATACAAGCAGCACATGTATTGACGTCACAGGCCACT  750
      ||||||||||||||||||||||||||||||||||||||||||| ||||||
seq2  GTTGAGTGGCGTCAATACAAGCAGCACATGTATTGACGTCACACGCCACT  750

seq1  ACTCCAGTCATCTTTAGAACTTTCTCAGATTGCCACTGGACATGTTCCTG  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTCCAGTCATCTTTAGAACTTTCTCAGATTGCCACTGGACATGTTCCTG  800

seq1  GACTGCTGCCCTGAGATTTCCTACTGACTCTTCGAGCGTTCCCACCCCAT  850
      |||||||||||||||||| |||||||||||||||||||||||||||||||
seq2  GACTGCTGCCCTGAGATTCCCTACTGACTCTTCGAGCGTTCCCACCCCAT  850

seq1  TGGGAGGCAGCTTCAGAGAGGGGCATCTTTGTTGTGTATGCACATATTCA  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGGAGGCAGCTTCAGAGAGGGGCATCTTTGTTGTGTATGCACATATTCA  900

seq1  AGTAGATGCACATGTGTGTGCCATACCTCCACATTTTTATGTGTGTGGTT  950
      |||||||||||||||||||||||||| ||||||||||| |||||||||||
seq2  AGTAGATGCACATGTGTGTGCCATACTTCCACATTTTT-TGTGTGTGGTT  949

seq1  GTGGGGTAAGTGGATCATGCC  971
      |||||||||||||||||||||
seq2  GTGGGGTAAGTGGATCATGCC  970