BAC Information

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BAC

Clone NameB6Ng01-058J15
Chromosome17 (Build37)
Map Location 47,025,597 - 47,139,245
singlet/doubletdoublet
Overlap geneA330017A19Rik, Tbcc, Prph2, Ubr2
Upstream geneVegfa, Mrps18a, 1700027N10Rik, Mad2l1bp, Gtpbp2, Polh, Xpo5, Rpo1-1, Yipf3, Gm88, Tjap1, Egfl9, Abcc10, BC040756, Zfp318, LOC677168, Crip3, Slc22a7, EG328825, Ttbk1, BC048355, Parc, Srf, Ptk7, Klc4, Mrpl2, Cul7, BC011248, Klhdc3, Mea1, Ppp2r5d, Pex6, Gnmt, Tnrc5, Ptcra, 2310039H08Rik, Rpl7l1, BC032203
Downstream geneLOC100043385, EG240110, Trerf1, Mrps10, Guca1b, Guca1a, EG545208, 1700001C19Rik, AI661453, Tbn, Ccnd3, Bysl, Trfp, LOC668463, Usp49, 1110002E23Rik, Frs3, Pgc, LOC100043405, Tcfeb, Mdfi, Foxp4, LOC383250
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-058J15.bB6Ng01-058J15.g
ACCDH880135DH880136
length1,102868
definitionDH880135|Mus musculus domesticus DNA, BAC clone: B6Ng01-058J15, 5' end.DH880136|Mus musculus domesticus DNA, BAC clone: B6Ng01-058J15, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(47,025,597 - 47,026,719)(47,138,591 - 47,139,245)
sequence
gaattccttccacccacagagcagccacaactacctgtctactccagttc
cagtgatctgacgccctcttctggtctccagaaacaccgcatactgcatc
gtggagcacatgcatcgaccgcacaggaaatactcatatacataaaagac
aaataaataaatctaaaaaaaaaaaaatctatctttcaggaaagaaagcg
gctcttacattcctttcggggacctgaacaaagtcatcagctgtgtttca
agagtccaaaattcatacttttgtgaaataaaagtgctttcaaaaagtag
aaaacaagagcctcatctagcttgcccaggaaacaaaactgacgaaaata
aggagcctgcataagtgaccaccgaccgcccccctcatcggcgctctgtt
acagcaggtatacagacaagaacacagtaacatgtgatctcccactccaa
ccctccacctaggaaagaatttgccacccagtgacacttgtctttgattc
tgtagtgtaatgctttctcttcaatcaagattttgtgcttgaggtttgga
ttttttttttttttttatggttaggaaaggaggcaaatgggacgtgaggc
ttgcaactcaagtcttaatgccaacttaattgaatggctctcgtttcctc
ccatctttatctgcaggaaaacgcaggcatattggtaaattttcaaatga
gtattttgggcagttaaaaaaatcccaattaaaagaacaaaaatggaggt
tggcaacaagggcggagatggggctgaaaccgagaactgtatgggccacc
gagtccagaaagcacggtggctgaaggcagcacgcgaggatgccacccga
gtcctcggcggccgccgccttgggcttctgccagggactgcacggtcttg
gctgcccactcgcacctcgggtggtctggactttagctagctcgttcact
tccgggacaaatccctcccaccacctctagaaaaatgtaccgtttcccat
cgccttctaagaccgccgccctataggagaagcaagcgctcggctgaggg
tcttagtctccgcggcacggttgccagctgccaggagtgctgcaccgtca
gg
gaattcttggtcttcctgcttctacccctggtgttctgggattacaggca
cacatcaaccaggcctggcttgactaggagtctttttcttttcttttttt
tcaagatttatttaatatatatatgagtacactgtcactgtcttcagaca
ctccagaagagggcattggatcccattacagatggttgttgtgagccacc
atgtggttgctgtgaattcaactcaggacctctggaagagcagtcagtgc
tcttaaccactgagccatctctccagccctcttttttggttttttaagac
agggtttcctgtgtagccttggctgtcctgcaactcactctgtagaccag
gctggcctcaaaatcagatccacctgcctctgcttctcaagttcttggac
taaagttgtgcaccaccactgcccagcaaatagtcttttagcaagactga
ttgcaacctaagtaaatgctgggtctgagagttgtgttagcagttcaggt
aacggtgttttagtagagtgggtcatttaatctcacgttttgaggttcat
aatccttttcctggcttagaggcaacatgacagacacaaagacatttaag
agaacaatgaacacatgggcggagggcaggcatgcgggacaggaggcagg
gaaaggagtgggtttagagttagagtcttacctgacccgctgcaggccta
aagcccccccacacacactttctttctgtgtataagtacaatgggattgt
agacctattttgcagtcattcactggtgctcagtgttttaaacctgacaa
gagggaaaggagttggggaaatggatctagaatatatcttgcaagaggcc
aagcaaatgcacttggag
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr17_47025597_47026719
seq2: B6Ng01-058J15.b_47_1148

seq1  GAATTCCTTCCACCCACAGAGCAGCCACAACTACCTGTCTACTCCAGTTC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCTTCCACCCACAGAGCAGCCACAACTACCTGTCTACTCCAGTTC  50

seq1  CAGTGATCTGACGCCCTCTTCTGGTCTCCAGAAACACCGCATACTGCATC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGTGATCTGACGCCCTCTTCTGGTCTCCAGAAACACCGCATACTGCATC  100

seq1  GTGGAGCACATGCATCGACCGCACAGGAAATACTCATATACATAAAAGAC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGGAGCACATGCATCGACCGCACAGGAAATACTCATATACATAAAAGAC  150

seq1  AAATAAATAAATCTAAAAAAAAAAAAATCTATCTTTCAGGAAAGAAAGCG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATAAATAAATCTAAAAAAAAAAAAATCTATCTTTCAGGAAAGAAAGCG  200

seq1  GCTCTTACATTCCTTTCGGGGACCTGAACAAAGTCATCAGCTGTGTTTCA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTCTTACATTCCTTTCGGGGACCTGAACAAAGTCATCAGCTGTGTTTCA  250

seq1  AGAGTCCAAAATTCATACTTTTGTGAAATAAAAGTGCTTTCAAAAAGTAG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGTCCAAAATTCATACTTTTGTGAAATAAAAGTGCTTTCAAAAAGTAG  300

seq1  AAAACAAGAGCCTCATCTAGCTTGCCCAGGAAACAAAACTGACGAAAATA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAACAAGAGCCTCATCTAGCTTGCCCAGGAAACAAAACTGACGAAAATA  350

seq1  AGGAGCCTGCATAAGTGACCACCGACCGCCCCCCTCATCGGCGCTCTGTT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGAGCCTGCATAAGTGACCACCGACCGCCCCCCTCATCGGCGCTCTGTT  400

seq1  ACAGCAGGTATACAGACAAGAACACAGTAACATGTGATCTCCCACTCCAA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGCAGGTATACAGACAAGAACACAGTAACATGTGATCTCCCACTCCAA  450

seq1  CCCTCCACCTAGGAAAGAATTTGCCACCCAGTGACACTTGTCTTTGATTC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCTCCACCTAGGAAAGAATTTGCCACCCAGTGACACTTGTCTTTGATTC  500

seq1  TGTAGTGTAATGCTTTCTCTTCAATCAAGATTTTGTGCTTGAGGTTTGGA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTAGTGTAATGCTTTCTCTTCAATCAAGATTTTGTGCTTGAGGTTTGGA  550

seq1  TTTTTTTTTTTTTTTTATGGTTAGGAAAGGAGGCAAATGGGACGTGAGGC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTTTTTTTTTTTTATGGTTAGGAAAGGAGGCAAATGGGACGTGAGGC  600

seq1  TTGCAACTCAAGTCTTAATGCCAACTTAATTGAATGGCTCTCGTTTCCTC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGCAACTCAAGTCTTAATGCCAACTTAATTGAATGGCTCTCGTTTCCTC  650

seq1  CCATCTTTATCTGCAGGAAAACGCAGGCATATTGGTAAATTTTCAAATGA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCATCTTTATCTGCAGGAAAACGCAGGCATATTGGTAAATTTTCAAATGA  700

seq1  GTATTTTGGGCAGTTAAAAAAATCCCAATTAAAAGAACAAAAATGGAGGT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTATTTTGGGCAGTTAAAAAAATCCCAATTAAAAGAACAAAAATGGAGGT  750

seq1  TGGCAACAAGGGCGGAGATGGGGCTGAAACCGAGAACTGTATGGGCCACC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGCAACAAGGGCGGAGATGGGGCTGAAACCGAGAACTGTATGGGCCACC  800

seq1  GAGTCCAGAAGGCACGGTGGCTGAAGGCAGCACGCGAGGATGCCACCCGA  850
      |||||||||| |||||||||||||||||||||||||||||||||||||||
seq2  GAGTCCAGAAAGCACGGTGGCTGAAGGCAGCACGCGAGGATGCCACCCGA  850

seq1  GTCCTCGGCGGCCGCCGCCTTGGGCTTCTGCCAGGGACTGCACGGTCTTG  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCCTCGGCGGCCGCCGCCTTGGGCTTCTGCCAGGGACTGCACGGTCTTG  900

seq1  GCTGCCCACTCGCACCTCGGGTTGGTCTGGACTTTAGGCTAGGCTCGTTC  950
      ||||||||||||||||||||| |||||||||||||| |||| ||||||||
seq2  GCTGCCCACTCGCACCTCGGG-TGGTCTGGACTTTA-GCTA-GCTCGTTC  947

seq1  ACTTCCGGTGACAAATCCCTCCCACCACCTCTAGAAATAATGTACCGTTT  1000
      |||||||| |||||||||||||||||||||||||||| ||||||||||||
seq2  ACTTCCGG-GACAAATCCCTCCCACCACCTCTAGAAA-AATGTACCGTTT  995

seq1  CCCCATCGCCTTCCTAAAGACCGCCGGCCCTATAGGGAGAAGCGAGGCGC  1050
       ||||||||||||   ||||||||| |||||||| |||||||| | ||||
seq2  -CCCATCGCCTTC--TAAGACCGCC-GCCCTATA-GGAGAAGC-AAGCGC  1039

seq1  TCCGGCTGAGGGTCTTAGCCCCGCGCGGCCAGCGGTTGCCAGCTGCGCAG  1100
      | |||||||||||||||| | | ||||||   |||||||||||||| || 
seq2  T-CGGCTGAGGGTCTTAGTCTC-CGCGGC--ACGGTTGCCAGCTGC-CA-  1083

seq1  GGAGTGGCTGCCACCGCGTCAGG  1123
      ||||| |||| |||  |||||||
seq2  GGAGT-GCTG-CAC--CGTCAGG  1102

seq1: chr17_47138591_47139245
seq2: B6Ng01-058J15.g_281_937 (reverse)

seq1  CTCCAAGTGCATTTGCTTGGCCTCTTGCAAGGTGTATTCTAGGTCCATTT  50
      ||||||||||||||||||||||||||||||| | |||||||| |||||||
seq2  CTCCAAGTGCATTTGCTTGGCCTCTTGCAAGATATATTCTAGATCCATTT  50

seq1  -CCCAACTCCTTTCCCCTCTTGTCAGGTTTAAAACACTGAGCACCAGTGA  99
       |||||||||||| ||||||||||||||||||||||||||||||||||||
seq2  CCCCAACTCCTTT-CCCTCTTGTCAGGTTTAAAACACTGAGCACCAGTGA  99

seq1  ATGACTGC-AAATAGGTCTACAATCCCATTGTACTTATACACAGAAAGAA  148
      |||||||| |||||||||||||||||||||||||||||||||||||||||
seq2  ATGACTGCAAAATAGGTCTACAATCCCATTGTACTTATACACAGAAAGAA  149

seq1  AGTGTGTGTGGGGGGGC-TTAGGCCTGCAGCGGGTCAGGTAAGACTCTAA  197
      ||||||||||||||||| ||||||||||||||||||||||||||||||||
seq2  AGTGTGTGTGGGGGGGCTTTAGGCCTGCAGCGGGTCAGGTAAGACTCTAA  199

seq1  CTCTAAACCCACTCCTTTCCCTGCCTCCTGTCCCGCATGCCTGCCCTCCG  247
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTAAACCCACTCCTTTCCCTGCCTCCTGTCCCGCATGCCTGCCCTCCG  249

seq1  CCCATGTGTTCATTGTTCTCTTAAATGTCTTTGTGTCTGTCATGTTGCCT  297
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCATGTGTTCATTGTTCTCTTAAATGTCTTTGTGTCTGTCATGTTGCCT  299

seq1  CTAAGCCAGGAAAAGGATTATGAACCTCAAAACGTGAGATTAAATGACCC  347
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAAGCCAGGAAAAGGATTATGAACCTCAAAACGTGAGATTAAATGACCC  349

seq1  ACTCTACTAAAACACCGTTACCTGAACTGCTAACACAACTCTCAGACCCA  397
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTCTACTAAAACACCGTTACCTGAACTGCTAACACAACTCTCAGACCCA  399

seq1  GCATTTACTTAGGTTGCAATCAGTCTTGCTAAAAGACTATTTGCTGGGCA  447
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCATTTACTTAGGTTGCAATCAGTCTTGCTAAAAGACTATTTGCTGGGCA  449

seq1  GTGGTGGTGCACAACTTTAGTCCAAGAACTTGAGAAGCAGAGGCAGGTGG  497
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGGTGGTGCACAACTTTAGTCCAAGAACTTGAGAAGCAGAGGCAGGTGG  499

seq1  ATCTGATTTTGAGGCCAGCCTGGTCTACAGAGTGAGTTGCAGGACAGCCA  547
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTGATTTTGAGGCCAGCCTGGTCTACAGAGTGAGTTGCAGGACAGCCA  549

seq1  AGGCTACACAGGAAACCCTGTCTTAAAAAACCAAAAAAGAGGGCTGGAGA  597
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGCTACACAGGAAACCCTGTCTTAAAAAACCAAAAAAGAGGGCTGGAGA  599

seq1  GATGGCTCAGTGGTTAAGAGCACTGACTGCTCTTCCAGAGGTCCTGAGTT  647
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATGGCTCAGTGGTTAAGAGCACTGACTGCTCTTCCAGAGGTCCTGAGTT  649

seq1  GAATTCAC  655
      ||||||||
seq2  GAATTCAC  657