BAC Information

Click to search

BAC

Clone NameB6Ng01-059P18
Chromosome11 (Build37)17 (Build37)
Map Location 101,608,307 - 101,609,41557,892,626 - 57,893,062
singlet/doubletsingletsinglet
Overlap geneDhx8
Upstream geneLOC380728, Hcrt, Ghdc, Stat5b, Stat5a, Stat3, Ptrf, Atp6v0a1, Naglu, Hsd17b1, Coasy, Mlx, Psmc3ip, 1300010M03Rik, Tubg1, Tubg2, Plekhh3, Ccr10, Cntnap1, Ezh1, Ramp2, Vps25, Wnk4, Ccdc56, Cntd1, Becn1, Psme3, Aoc2, Aoc3, LOC629949, G6pc, Aarsd1, 1700113I22Rik, Rundc1, Rpl27, Ifi35, Vat1, Rnd2, Brca1, Nbr1, Tmem106a, LOC667306, Rdm1, Arl4d, LOC100038842
Downstream geneEtv4, Meox1, LOC194960, Sost, Dusp3, 1700006E09Rik, Mpp3, Cd300lg, Mpp2, Ppy, Pyy, LOC100040687, LOC666411, Nags, Tmem101, Lsm12, G6pc3, Hdac5, BC030867, Asb16, 2010008E23Rik, Ubtf, Slc4a1, Rap2ip, Slc25a39, Grn, BC025575, Itga2b, Mdk-ps1, LOC100040792, Fzd2, 2810433D01Rik, Psmb5-ps, Gm1564, LOC100042456, Ccdc43
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-059P18.bB6Ng01-059P18.g
ACCDH881101DH881102
length1,101810
definitionDH881101|Mus musculus domesticus DNA, BAC clone: B6Ng01-059P18, 5' end.DH881102|Mus musculus domesticus DNA, BAC clone: B6Ng01-059P18, 3' end.
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(101,608,307 - 101,609,415)(57,892,626 - 57,893,062)
sequence
gaattctgggaacttttcagagggtacccgatagggtagggttggttttg
ttttgttaatagctgtactcgaaagaaattagactcaaggatctcaatct
cccctccctgccctttgtcctctcctatctagctagccataggggatgaa
acaggagataaaagatgagaaacagaagaacccacgaagtagcaaagacc
agcaacacccctctgctgagcattcctgatacctcatctgagatgtcttc
tgtctgcctgaaacacaggtccagtcacactttccccacacacctgttcc
tcagctgtcccttacccaaaggcaccatcactctgctgctcataggacac
ctggaagctagctttggccactgctacttcctatatttaatatatccaat
attcaacaatctacacatctcaaatattttctcttctctgataacaccat
gtccaggccatgatcctctcctcttgctatcataaaagcctgccgatcca
cctgaagcatctactcttgcccttcccaactcctcccagagacctctgat
gatgccatacccatgcttagaacacttttacattccatgatgcacttaag
ataagcctgatacctgataccatccacaaagccctgacctgccaatcctg
ccccatccctgggcacccagcataacacacagacttccaaaggtcttgtc
tactgtaaagctgttaacacagttcattccccacctgctgccacatactc
tctaaacctctttgaaagactaggttctagccagtcatggcagctcacac
ccgccatcccagcacataggaggctgaagcagaggactgttccaagttta
ggattagcctaagctacacagttagtttaaagtcacccagaactacataa
tgagacccatctaaacaaacatacaaaaggggatagagagatacccagtg
gttaacgggcactgactgctctacagaggacccaaactatatggtgtatc
tatatggtggcctcaatctctgcactctattctcaggggatctaatgcct
ccttctgacctccatgagcacaggcacaccaaggttaaccagagataaca
t
gaattctctctgtagatcaggctggctttgaactcaaatcctcttgcctc
tacctctctggtgctggcattaaaggggtgtgccaccaataacttttaaa
gcttaatatttactatgcttggaactgaagaggtggctcagcagtcactg
gctgctcttctagagctcctgagttcgattcccagcaaccacacgtctgt
aatgagatcagatgccctcttctgtaatgcaggtgtatatgcagataaaa
tattcatataaataacaaatatatctttaagaaagtactctgctgagctg
ggtatggtggggcaccccttctggtaaggaggacgcgtgctccactatgt
tcatagcagccttatttataatagccagaatctggaaagaacccagatgc
ccctcaacagaggaatggataccgaaaatgtggtacatttacacaatgga
gtactacttagcttttaaaaagaatgaatttatgaaattcctaggcaaat
ggatggacctggagggcatcctcctgagtgaggtaacccaatcacaaagg
aactcacacaatatgtactcactgataagtggatattagcccaaaactta
ggatacccaagatataagatacaattttgctaaatgcatgaaactcaaga
agaatgaagaccaaagtggggacactgtgccccttcttagaattgggacc
aaaacacccatggaaggagttacagagacaaagtttggagctgtgacaaa
ggatagaccatctagagactgccatatccagagatccaccccataatcgc
ttcaaatgct
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr11_101608307_101609415
seq2: B6Ng01-059P18.b_44_1144 (reverse)

seq1  ATGTTATCTCT-GTGTACCTTGTGTGTGCCTGGTGCTCATGGAGGTCAGA  49
      ||||||||||| ||  |||||| |||||||| ||||||||||||||||||
seq2  ATGTTATCTCTGGTTAACCTTG-GTGTGCCT-GTGCTCATGGAGGTCAGA  48

seq1  AGAGGGCATTAGATCCCCTGAGAATAGAGTTGCAGGAGATTGAGGGCCAC  99
      ||  ||||||||||||||||||||||||| |||| |||||||| ||||||
seq2  AGGAGGCATTAGATCCCCTGAGAATAGAG-TGCA-GAGATTGA-GGCCAC  95

seq1  CATATAGATACACCATATAGTTTGGGTCCTCTGTAAGAGCAGTCAGTGCC  149
      |||||||||||||||||||||||||||||||||| |||||||||||||||
seq2  CATATAGATACACCATATAGTTTGGGTCCTCTGT-AGAGCAGTCAGTGCC  144

seq1  CGTTAACCACTGGGTATCTCTCTATCCCCTTTTGTATGTTTGTTTAAGAT  199
      ||||||||||||||||||||||||||||||||||||||||||||| ||||
seq2  CGTTAACCACTGGGTATCTCTCTATCCCCTTTTGTATGTTTGTTT-AGAT  193

seq1  GGGGTCTCATTATGTAGTTCTGGGTGGCTTTAAACTAACTGTGTAGCTTA  249
       ||||||||||||||||||||||||| |||||||||||||||||||||||
seq2  -GGGTCTCATTATGTAGTTCTGGGTGACTTTAAACTAACTGTGTAGCTTA  242

seq1  GGCTAATCCTAAACTTGGAACAGTCCTCCTGCTTCAGCCTCCTATGTGCT  299
      ||||||||||||||||||||||||||| ||||||||||||||||||||||
seq2  GGCTAATCCTAAACTTGGAACAGTCCT-CTGCTTCAGCCTCCTATGTGCT  291

seq1  GGGATGGCGGGTGTGAGCTGCCATGACTGGCTAGAACCTAGTCTTTCAAA  349
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGATGGCGGGTGTGAGCTGCCATGACTGGCTAGAACCTAGTCTTTCAAA  341

seq1  GAGGTTTAGAGAGTATGTGGCAGCAGGTGGGGAATGAACTGTGTTAACAG  399
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGGTTTAGAGAGTATGTGGCAGCAGGTGGGGAATGAACTGTGTTAACAG  391

seq1  CTTTACAGTAGACAAGACCTTTGGAAGTCTGTGTGTTATGCTGGGTGCCC  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTACAGTAGACAAGACCTTTGGAAGTCTGTGTGTTATGCTGGGTGCCC  441

seq1  AGGGATGGGGCAGGATTGGCAGGTCAGGGCTTTGTGGATGGTATCAGGTA  499
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGGATGGGGCAGGATTGGCAGGTCAGGGCTTTGTGGATGGTATCAGGTA  491

seq1  TCAGGCTTATCTTAAGTGCATCATGGAATGTAAAAGTGTTCTAAGCATGG  549
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGGCTTATCTTAAGTGCATCATGGAATGTAAAAGTGTTCTAAGCATGG  541

seq1  GTATGGCATCATCAGAGGTCTCTGGGAGGAGTTGGGAAGGGCAAGAGTAG  599
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTATGGCATCATCAGAGGTCTCTGGGAGGAGTTGGGAAGGGCAAGAGTAG  591

seq1  ATGCTTCAGGTGGATCGGCAGGCTTTTATGATAGCAAGAGGAGAGGATCA  649
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGCTTCAGGTGGATCGGCAGGCTTTTATGATAGCAAGAGGAGAGGATCA  641

seq1  TGGCCTGGACATGGTGTTATCAGAGAAGAGAAAATATTTGAGATGTGTAG  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGCCTGGACATGGTGTTATCAGAGAAGAGAAAATATTTGAGATGTGTAG  691

seq1  ATTGTTGAATATTGGATATATTAAATATAGGAAGTAGCAGTGGCCAAAGC  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTGTTGAATATTGGATATATTAAATATAGGAAGTAGCAGTGGCCAAAGC  741

seq1  TAGCTTCCAGGTGTCCTATGAGCAGCAGAGTGATGGTGCCTTTGGGTAAG  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGCTTCCAGGTGTCCTATGAGCAGCAGAGTGATGGTGCCTTTGGGTAAG  791

seq1  GGACAGCTGAGGAACAGGTGTGTGGGGAAAGTGTGACTGGACCTGTGTTT  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGACAGCTGAGGAACAGGTGTGTGGGGAAAGTGTGACTGGACCTGTGTTT  841

seq1  CAGGCAGACAGAAGACATCTCAGATGAGGTATCAGGAATGCTCAGCAGAG  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGCAGACAGAAGACATCTCAGATGAGGTATCAGGAATGCTCAGCAGAG  891

seq1  GGGTGTTGCTGGTCTTTGCTACTTCGTGGGTTCTTCTGTTTCTCATCTTT  949
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGTGTTGCTGGTCTTTGCTACTTCGTGGGTTCTTCTGTTTCTCATCTTT  941

seq1  TATCTCCTGTTTCATCCCCTATGGCTAGCTAGATAGGAGAGGACAAAGGG  999
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATCTCCTGTTTCATCCCCTATGGCTAGCTAGATAGGAGAGGACAAAGGG  991

seq1  CAGGGAGGGGAGATTGAGATCCTTGAGTCTAATTTCTTTCGAGTACAGCT  1049
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGGAGGGGAGATTGAGATCCTTGAGTCTAATTTCTTTCGAGTACAGCT  1041

seq1  ATTAACAAAACAAAACCAACCCTACCCTCTCGGGTACCCTCTGAAAAGTT  1099
      |||||||||||||||||||||||||||| |||||||||||||||||||||
seq2  ATTAACAAAACAAAACCAACCCTACCCTATCGGGTACCCTCTGAAAAGTT  1091

seq1  CCCAGAATTC  1109
      ||||||||||
seq2  CCCAGAATTC  1101

seq1: chr17_57892626_57893062
seq2: B6Ng01-059P18.g_405_840 (reverse)

seq1  GGCAGTCTCTAGATGGCCCATCCTTTCGTCACAGCTCCAAACTTTGTCTC  50
      |||||||||||||||| | ||||||| |||||||||||||||||||||||
seq2  GGCAGTCTCTAGATGGTCTATCCTTT-GTCACAGCTCCAAACTTTGTCTC  49

seq1  TGTAACTCCTTCCATGGGTGTTTTGTTCCCAATTCTAAGAAGGGGCAAAG  100
      ||||||||||||||||||||||||| ||||||||||||||||||||| ||
seq2  TGTAACTCCTTCCATGGGTGTTTTGGTCCCAATTCTAAGAAGGGGCACAG  99

seq1  TGTCCACACTTTGGCCTTCATTTTTCTTGAGTTTCATGCGTTTAGC-AAA  149
      ||||| |||||||| ||||||| |||||||||||||||| |||||| |||
seq2  TGTCCCCACTTTGGTCTTCATTCTTCTTGAGTTTCATGCATTTAGCAAAA  149

seq1  TTGTATCTTATATCTTGGGTATCCTAAGTTTCTGGGCTAATATCCACTTA  199
      ||||||||||||||||||||||||||||||| ||||||||||||||||||
seq2  TTGTATCTTATATCTTGGGTATCCTAAGTTT-TGGGCTAATATCCACTTA  198

seq1  TCAGTGAGTACATATTGTGTGAGTTCCTTTGTGATTGGGTTACCTCACTC  249
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGTGAGTACATATTGTGTGAGTTCCTTTGTGATTGGGTTACCTCACTC  248

seq1  AGGATGATGCCCTCCAGGTCCAACCATTTGCCTAGGAATTTCATAAATTC  299
      |||| ||||||||||||||||| |||||||||||||||||||||||||||
seq2  AGGAGGATGCCCTCCAGGTCCATCCATTTGCCTAGGAATTTCATAAATTC  298

seq1  ATTCTTTTTAATAGCTGAGTAGTACTCCATTGTGTAAATGTACCACATTT  349
      ||||||||||| |||| |||||||||||||||||||||||||||||||||
seq2  ATTCTTTTTAAAAGCTAAGTAGTACTCCATTGTGTAAATGTACCACATTT  348

seq1  TCTGTATCCATTCCTCTGTTGAGGGGCATCTGGGTTCTTTCCAGCTTCTG  399
      || ||||||||||||||||||||||||||||||||||||||||| |||||
seq2  TCGGTATCCATTCCTCTGTTGAGGGGCATCTGGGTTCTTTCCAGATTCTG  398

seq1  GCTATTATAAATAAGGCTGCTATGAACATAGTGGAGCA  437
      ||||||||||||||||||||||||||||||||||||||
seq2  GCTATTATAAATAAGGCTGCTATGAACATAGTGGAGCA  436