BAC Information

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BAC

Clone NameB6Ng01-060F11
Chromosome17 (Build37)18 (Build37)
Map Location 89,927,465 - 89,928,66645,551,761 - 45,552,175
singlet/doubletsingletsinglet
Overlap genenone
Upstream geneCcdc128, LOC668866, Gtf2a1lf, Lhcgr, LOC668867, Fshr, LOC100043904
Downstream geneLOC100043906, Nrxn1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-060F11.bB6Ng01-060F11.g
ACCDH881340DH881341
length1,162985
definitionDH881340|Mus musculus domesticus DNA, BAC clone: B6Ng01-060F11, 5' end.DH881341|Mus musculus domesticus DNA, BAC clone: B6Ng01-060F11, 3' end.
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(89,927,465 - 89,928,666)(45,551,761 - 45,552,175)
sequence
gaattcactgtaaaggctgatgttataaacaagataatcaggagttgcat
ggaattaaatttcaatgtggtgccagcactggggaatcacttcaaatata
tacagtatttctaaaaacctggcttgtgtagttataaatattaaatccaa
accaccagcatgtgtctaatacttggaatttttccatgaaattatgaggt
tttcactgattattattagtctagaataactttttcttcattgcacagct
ttctgcatgctgttaggaaatatttgctttagggagagaaattaactctt
tcacttaccatatttaaaccaatggcactcttcctgatctctttggataa
aattccttttcctatgtactagtgtgaccagctacattagtgcccaggcc
caactgctaacaaacatgttgacatccccacctcaggatccttgacttcc
tcagtcactattgccacatcaatacattattcttctttgtctcagcttct
taatattccctctagttaaaaagacactcattttaatctactgacaatga
agttgttgatgttaacaatgagatatttcacctatttttctcattattat
atattatcattacaataatgttacataataaattactgtatgaaacagtt
ggctttttaaagaagtgtttatatttttccagatatgagtagccactgag
atgtttgaagtcacaggagagactagattctggtcacacttaggtacaat
ttcatataacttctttctggtcttagactaaagcagaggttctcaatctg
taggtcttgacccatttcagggtagaatattcctcatcagaaaacacaga
tatttatattacaatccataacagtagggaaattatagttacgaggtagc
aacaaaaataatttcatagttgaagatcaccataataagatgaactgtat
atagggtcaaagcaacaggagggttgagactcccgggctaagatttgctg
tgcaacactcacagcatcacagaacaaagatgagacaaacattatcttgt
tcaactcaatcagtgaggcagagagggttggtctcaataccagaccaata
gcagaaaaagaaagctgggagtctactcttaggaacagactatcaatctt
actcgggttcac
gaattccttgggatctttcgcccctgagattctctcttctatctcttgta
ttttgttggtgatacctgtatctatgactcctgatctctttcctaggttt
tctatcttcagagttgtctctttttgtggtttctttattgttctattttc
atttttagatcctgagtggttttgttcagttccttcccctctttgattgt
tttgcctataattctttaagtgatttttgtctttcctctttaagggcttc
taacgttttacctgtgtcctcctatatttctttaggggagtttttttatg
tccttcttaaagttctctatcatcacatgagaagtgatttttacatctga
atcttgcttttccggtgtgttggggtgtccagaacttgctgtggttcatg
aactgggttctgatgatgccaagtagccttggtttatgacccttaggttt
gtgtgtttgtctttcaccatcaggttatctctggagttatttggtgttgc
attctctgactggagcttgtcccttctgtggttcttaagcctgtggcttt
aggtatgtcagcattctttgggagaccagctctctcctggaaaaatttgt
gtgtggagggatgtaggacagtcttggatatagagtgcagatggagcccg
caaggatcctggccccagttgctctgctgtttctgtgccctgtgtgctcc
tggcacgtaggtgttgtacaattatttaggtgaaagtggtgatctcacct
ctgagctttgaagtgagtgcactgcttggagaccagctctctcctggcag
gatttgtgcatggagggctctgggacaaccttaggtctggagtttcagta
gagataggaaggaccctatccccagttgctctgctgttcctatgccctgt
gcattgagtatctttttttctgtctgttctttattctaacccactgacat
tggaaagttattagcccagttcagaattatggctg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr17_89927465_89928666
seq2: B6Ng01-060F11.b_48_1209

seq1  GAATTCACTGTAAAGGCTGATGTTATAAACAAGATAATCAGGAGTTGCAT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCACTGTAAAGGCTGATGTTATAAACAAGATAATCAGGAGTTGCAT  50

seq1  GGAATTAAATTTCAATGTGGTGCCAGCACTGGGGAATCACTTCAAATATA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAATTAAATTTCAATGTGGTGCCAGCACTGGGGAATCACTTCAAATATA  100

seq1  TACAGTATTTCTAAAAACCTGGCTTGTGTAGTTATAAATATTAAATCCAA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACAGTATTTCTAAAAACCTGGCTTGTGTAGTTATAAATATTAAATCCAA  150

seq1  ACCACCAGCATGTGTCTAATACTTGGAATTTTTCCATGAAATTATGAGGT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCACCAGCATGTGTCTAATACTTGGAATTTTTCCATGAAATTATGAGGT  200

seq1  TTTCACTGATTATTATTAGTCTAGAATAACTTTTTCTTCATTGCACAGCT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCACTGATTATTATTAGTCTAGAATAACTTTTTCTTCATTGCACAGCT  250

seq1  TTCTGCATGCTGTTAGGAAATATTTGCTTTAGGGAGAGAAATTAACTCTT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTGCATGCTGTTAGGAAATATTTGCTTTAGGGAGAGAAATTAACTCTT  300

seq1  TCACTTACCATATTTAAACCAATGGCACTCTTCCTGATCTCTTTGGATAA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCACTTACCATATTTAAACCAATGGCACTCTTCCTGATCTCTTTGGATAA  350

seq1  AATTCCTTTTCCTATGTACTAGTGTGACCAGCTACATTAGTGCCCAGGCC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTCCTTTTCCTATGTACTAGTGTGACCAGCTACATTAGTGCCCAGGCC  400

seq1  CAACTGCTAACAAACATGTTGACATCCCCACCTCAGGATCCTTGACTTCC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAACTGCTAACAAACATGTTGACATCCCCACCTCAGGATCCTTGACTTCC  450

seq1  TCAGTCACTATTGCCACATCAATACATTATTCTTCTTTGTCTCAGCTTCT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGTCACTATTGCCACATCAATACATTATTCTTCTTTGTCTCAGCTTCT  500

seq1  TAATATTCCCTCTAGTTAAAAAGACACTCATTTTAATCTACTGACAATGA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATATTCCCTCTAGTTAAAAAGACACTCATTTTAATCTACTGACAATGA  550

seq1  AGTTGTTGATGTTAACAATGAGATATTTCACCTATTTTTCTCATTATTAT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTGTTGATGTTAACAATGAGATATTTCACCTATTTTTCTCATTATTAT  600

seq1  ATATTATCATTACAATAATGTTACATAATAAATTACTGTATGAAACAGTT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATTATCATTACAATAATGTTACATAATAAATTACTGTATGAAACAGTT  650

seq1  GGCTTTTTAAAGAAGTGTTTATATTTTTCCAGATATGAGTAGCCACTGAG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCTTTTTAAAGAAGTGTTTATATTTTTCCAGATATGAGTAGCCACTGAG  700

seq1  ATGTTTGAAGTCACAGGAGAGACTAGATTCTGGTCACACTTAGGTACAAT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTTTGAAGTCACAGGAGAGACTAGATTCTGGTCACACTTAGGTACAAT  750

seq1  TTCATATAACTTCTTTCTGGTCTTAGACTAAAGCAGAGGTTCTCAATCTG  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCATATAACTTCTTTCTGGTCTTAGACTAAAGCAGAGGTTCTCAATCTG  800

seq1  TAGGTCTTGACCCATTTCAGGGTAGAATATTCCTCATCAGAAAACACAGA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGGTCTTGACCCATTTCAGGGTAGAATATTCCTCATCAGAAAACACAGA  850

seq1  TATTTATATTACAATCCATAACAGTAGGGAAATTATAGTTACGAGGTAGC  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTTATATTACAATCCATAACAGTAGGGAAATTATAGTTACGAGGTAGC  900

seq1  AACAAAAATAATTTCATAGTTGAAGATCACCATAATAAGATGAACTGTAT  950
      ||||||||||||||||||||||||||||||||||||||||||||||||| 
seq2  AACAAAAATAATTTCATAGTTGAAGATCACCATAATAAGATGAACTGTA-  949

seq1  TATAGGGTCAAAGCAACAGGAGGGTTGAGAACCCCCGGGCTAAAGATTTG  1000
      ||||||||||||||||||||||||||||| || |||||||| ||||||||
seq2  TATAGGGTCAAAGCAACAGGAGGGTTGAG-ACTCCCGGGCT-AAGATTTG  997

seq1  CTGTGGCAAACACTCACAAGGCAATCACAGAAACAAAAGATGAGACAAAC  1050
      |||||   ||||||||||  || |||||||||   |||||||||||||||
seq2  CTGTG--CAACACTCACA--GC-ATCACAGAA--CAAAGATGAGACAAAC  1040

seq1  ATTTATCTTTGTTCAACCCAAATCAGTGAAGGCAGAGAGGGTTTGGTCTC  1100
      | ||||| ||||||||| | |||||||| |||||||||||| ||||||||
seq2  A-TTATC-TTGTTCAACTC-AATCAGTG-AGGCAGAGAGGG-TTGGTCTC  1085

seq1  ACATACCAAGACCACATAGCAGGAAAAAAGAAAAGGTTTGAGAGTCTACA  1150
      | ||||| |||||| |||||||  |||||||||     || |||||||  
seq2  A-ATACC-AGACCA-ATAGCAG--AAAAAGAAA---GCTGGGAGTCTA--  1125

seq1  TCTCTTTAAGGAAACAGACTTATTCTATTTTTTTTTTTTTTTTCGGGTTC  1200
       |||||  ||| ||||||||   || |         | ||  ||||||||
seq2  -CTCTT--AGG-AACAGACT--ATCAA---------TCTTACTCGGGTTC  1160

seq1  AC  1202
      ||
seq2  AC  1162

seq1: chr18_45551761_45552175
seq2: B6Ng01-060F11.g_90_485 (reverse)

seq1  CATCATCAGAACCCAGCACTCCCACTTTGCCCAGTCCAGGGCACCCCAAC  50
      ||||||||||||||||  |    ||     | ||| | || |||||||||
seq2  CATCATCAGAACCCAGTTCATGAACCACAGCAAGTTCTGGACACCCCAAC  50

seq1  GCACCCAAAAACCTAGAGCTAGAT-TTAAAAGCATATCTCATGATGATGG  99
       ||||  |||| | |||   |||| | |||| ||  ||||||| ||||| 
seq2  ACACCGGAAAAGCAAGATTCAGATGTAAAAATCACTTCTCATG-TGATGA  99

seq1  TAGAGGACATCAAGAAGGACTTTAATAAA-TCACTTAAAGAAATACAGGT  148
      ||||| || | ||||||||| | || ||| || | |||||||||| ||| 
seq2  TAGAGAACTTTAAGAAGGACATAAAAAAACTCCCCTAAAGAAATATAGGA  149

seq1  GAACACTGCTAAAGAGTTACAAGTCCTTAAAGAAAAACAGGAAAACACAA  198
      | |||| | ||||  |||| ||| |||||||||       | ||| ||||
seq2  GGACACAGGTAAAACGTTAGAAGCCCTTAAAGA-------GGAAAGACAA  192

seq1  TCAAACAGGTAGAAGTC-CTTACAGAAAAAGAGGAAAAAACATACAAACA  247
                  || || |||| ||||  | |||  ||||||  |||| |
seq2  ------------AAATCACTTAAAGAATTATAGG-CAAAACAATCAAAGA  229

seq1  GGTGATGGAAATGAACAAAACCATACTAGACCTAAAAAGGGAAGTAGACA  297
      || || |||| ||||||||||||  |  || ||||||| | || |||| |
seq2  GGGGAAGGAACTGAACAAAACCACTCAGGATCTAAAAATGAAAATAGA-A  278

seq1  CAATAAAGAAAACTCAAAGTGAGGCAACACTGGAGATAGAAACCCTAGGA  347
      ||||||||||| | ||||  ||| |||| ||| ||||||||| |||||||
seq2  CAATAAAGAAACCACAAAAAGAGACAACTCTGAAGATAGAAAACCTAGGA  328

seq1  AAGAAATCTGGAACCATAAATTTGAGCATCAGCAACAGAATACAAGAGAT  397
      |||| ||| |||  |||| ||    | |||| ||||| ||||||||||||
seq2  AAGAGATCAGGAGTCATAGATACAGGTATCACCAACAAAATACAAGAGAT  378

seq1  GGAAGAGAGAATCTCAGG  415
       |||||||||||||||||
seq2  AGAAGAGAGAATCTCAGG  396