BAC Information

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BAC

Clone NameB6Ng01-061N02
Chromosome17 (Build37)18 (Build37)
Map Location 39,984,943 - 39,985,2833,005,421 - 3,006,660
singlet/doubletsingletsinglet
Overlap geneLOC672857
Upstream geneLOC100043297, LOC100043300, EG668200, LOC627695
Downstream geneLOC634967, Pgk2, Crisp3, Crisp1, LOC668229, LOC100043756, EG433107, EG619517, Crisp2, Rhag
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-061N02.bB6Ng01-061N02.g
ACCDH882394DH882395
length3681,149
definitionDH882394|Mus musculus domesticus DNA, BAC clone: B6Ng01-061N02, 5' end.DH882395|Mus musculus domesticus DNA, BAC clone: B6Ng01-061N02, 3' end.
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(39,984,943 - 39,985,283)(3,005,421 - 3,006,660)
sequence
gaattcccagtaagtgcgggtcataagcttgcgttgattaagtccctgcc
ctttgtacacaccgcccgtcgctactaccgattggatggtttagtgaggc
cctcggatcggccccgccggggtcggcccacggccctggcggagcgctga
gaagacggtcgaacttgactatctagaggaagtaaaagtcgtaacaaggt
ttccgtaggtgaacctgcggaaggatcattaacgggagactgtggaggag
cggcggcgtggctcgctctccctgtcttgtgtgtatcctcgccgggaggc
gcgtgcgtcccgggtcccgtcgcccgcgtgtggagcgaggtgtctggagt
gaggtgagagaaggggtg
gaattcaaggccaccatggccatggtcggcaaagtgagttccagaacagc
cagggctatagggagaaaccctgtctggaaaaaaaaaaaacaaaataaat
aaaataaaataaaataaaataaaataaaataaaataaaataagaaataga
aatgaaaaagaattagaaaaaagattacagaaataaaacataagcccact
agattgcaggttaccccaatcacagcagaagtatcaaacacacacacaca
cacacacacacacacacacacacatgcacacacactctgtcataaaatcc
aatgtgccaggacagccagggctatacagagaaaccctgtctcgaaaaac
caaaacaagcaaaaaaacaaaaaacaaaaatccaatgtgccttcatgatc
aaaattcgatagtcaatagtactagaagaatcatatgtctgaaaatcctt
ccttccttcctttctttctttctttctttctttctttctttctttctttc
tttctccctttctttctttctttctttctttctttctttctttctttctt
tctttcttattacaaatagttttcaatgtaagtgtgtgtttgtgctttat
ctgctgcgtatatacctgcatgccaggagagggcaacagaacctaggaga
aaccaccatgcagctcctgagaataaatgaaaaaacaacaaaaaaggaaa
ttctaatcacatagaatgtagatatatgcaaggctgtcagagtgcttttt
aaggcttagtgtaagtaatgaaaaatgttgtgtgtcttttatccaaacac
agaaggcagatggttcgcctgcatgtctgttgtctgcatgtctactttct
tgttctgtcactcggttgcactttgacctcaccaagctgaaagacaacat
gtgcatggcagccatcttgtctgctaactgaactcccgcacaacaagatg
gaggtggctgggtctcatgtgacctattgattcaggtcgctttggtttct
ctctcaccgggttttatggcccggtttgcagtgcgaaatggtggaggagg
gcttcctaagcagcctcgaccatccacgacagccctcacgtttccctcta
ctttttccttatgctttaagcgggaagctctgattggtgagtctaaatt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr17_39984943_39985283
seq2: B6Ng01-061N02.b_44_411

seq1  GAATTCCCAGTAAGTGCGGGCCATAAGCTTGCGTTGATTAAGTCCCTGCC  50
      |||||||||||||||||||| |||||||||||||||||||||||||||||
seq2  GAATTCCCAGTAAGTGCGGGTCATAAGCTTGCGTTGATTAAGTCCCTGCC  50

seq1  CTTTGTACACACCGCCCGTCGCTACTACCGATTGGATGGTTTAGTGA---  97
      |||||||||||||||||||||||||||||||||||||||||||||||   
seq2  CTTTGTACACACCGCCCGTCGCTACTACCGATTGGATGGTTTAGTGAGGC  100

seq1  ------------------------GGCCCACGGCCCTGGTGGAGCGCTGA  123
                              ||||||||||||||| ||||||||||
seq2  CCTCGGATCGGCCCCGCCGGGGTCGGCCCACGGCCCTGGCGGAGCGCTGA  150

seq1  GAAGACGGTCGAACTTGACTATCTAGAGGAAGTAAAAGTCGTAACAAGGT  173
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGACGGTCGAACTTGACTATCTAGAGGAAGTAAAAGTCGTAACAAGGT  200

seq1  TTCCGTAGGTGAACCTGCGGAAGGATCATTAACGGGAGACTGTGGAGGAG  223
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCGTAGGTGAACCTGCGGAAGGATCATTAACGGGAGACTGTGGAGGAG  250

seq1  CGGCGGCGTGGCTCGCTCTCCCCGTCTTGTGTGTGTCCTCGCCGGGAGGC  273
      |||||||||||||||||||||| ||||||||||| |||||||||||||||
seq2  CGGCGGCGTGGCTCGCTCTCCCTGTCTTGTGTGTATCCTCGCCGGGAGGC  300

seq1  GCGTGCGTCCCGGGTCCCGTCGCCCGCGTGTGGAGCGAGGTGTCTGGAGT  323
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCGTGCGTCCCGGGTCCCGTCGCCCGCGTGTGGAGCGAGGTGTCTGGAGT  350

seq1  GAGGTGAGAGAAGGGGTG  341
      ||||||||||||||||||
seq2  GAGGTGAGAGAAGGGGTG  368

seq1: chr18_3005421_3006660
seq2: B6Ng01-061N02.g_70_1218 (reverse)

seq1  AATTTAGACTGACCAATTCAGAGTCTGCCATTTAAAAGCATAAGGAAAAA  50
      |||||||||| ||||| |||||| || ||   | ||||||||||||||||
seq2  AATTTAGACTCACCAA-TCAGAG-CTTCCCGCTTAAAGCATAAGGAAAAA  48

seq1  GTAGGAGAAAACGTGA-GGCTGTCTGTGGATGGTCGAGGCTGCTTTAGGG  99
      ||||  | |||||||| ||||||| |||||||||||||||||| ||||| 
seq2  GTAGAGGGAAACGTGAGGGCTGTC-GTGGATGGTCGAGGCTGC-TTAGGA  96

seq1  A-ACCTCCT-CACCATTCTGCACTTGCAAACCGGGCCACTAGAACCTGGT  147
      |  |||||| |||||||  |||| |||||||||||||| || |||| |||
seq2  AGCCCTCCTCCACCATTTCGCAC-TGCAAACCGGGCCA-TAAAACCCGGT  144

seq1  GAAGGGAGAAACCAAAGTGACCTGAAACAATAGGTCACATGAAGGCCAGC  197
      | || |||||||||||| |||||||| |||||||||||||||   |||||
seq2  G-AGAGAGAAACCAAAGCGACCTGAATCAATAGGTCACATGAGACCCAGC  193

seq1  CA---CCATCTTGTTGTGCAGGTGGTCAGTTAGCAGACAAGATAGCTGAC  244
      ||   |||||||||||||| || | |||||||||||||||||| |||| |
seq2  CACCTCCATCTTGTTGTGCGGGAGTTCAGTTAGCAGACAAGATGGCTGCC  243

seq1  ATGCACATGTTGTCTTTCATCTTGGTGAGGTCAATGTGCAACCGAGTGAC  294
      ||||||||||||||||||| |||||||||||||| |||||||||||||||
seq2  ATGCACATGTTGTCTTTCAGCTTGGTGAGGTCAAAGTGCAACCGAGTGAC  293

seq1  AGGACAAGGAAGTAGACATGCAGACAACAGACATGCAGGTGCACCACCTC  344
      || ||||| |||||||||||||||||||||||||||||| | |||| || 
seq2  AGAACAAGAAAGTAGACATGCAGACAACAGACATGCAGGCGAACCATCTG  343

seq1  CCTTCTGTGTTTGTATAAAACACACACAAAAATTTTCATTATTTACAGTA  394
      ||||||||||||| |||||| |||||||| | ||||||||| ||||| ||
seq2  CCTTCTGTGTTTGGATAAAAGACACACAACATTTTTCATTACTTACACTA  393

seq1  AGCCTTAAAAAGCACTCTGACAGCCTCGCATATATCTACATTCTATGTGA  444
      |||||||||||||||||||||||||| |||||||||||||||||||||||
seq2  AGCCTTAAAAAGCACTCTGACAGCCTTGCATATATCTACATTCTATGTGA  443

seq1  TTAGAATTTCCTTTTTTTGTTGTTTTTTAATTTATTCTCAAGAGCTGCAT  494
      ||||||||||| |||||||||||||||| ||||||||||| |||||||||
seq2  TTAGAATTTCC-TTTTTTGTTGTTTTTTCATTTATTCTCAGGAGCTGCAT  492

seq1  GGTGGTTTCTCCTAGGTTCTGTTGCTCTCTCCTGGCATGCAGGTATATAC  544
      ||||||||||||||||||||||||| ||||||||||||||||||||||||
seq2  GGTGGTTTCTCCTAGGTTCTGTTGCCCTCTCCTGGCATGCAGGTATATAC  542

seq1  ACAGCAGATAAAGCACAAACACACATTTACATTGAAAAATAATTGTAATA  594
       |||||||||||||||||||||||| |||||||||||| || ||||||||
seq2  GCAGCAGATAAAGCACAAACACACACTTACATTGAAAACTATTTGTAATA  592

seq1  AGAATGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAG  644
      |||| |||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAG  642

seq1  AAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGGAAGGAAGGAAGGAAGGA  694
        |||||||||||||||||||||||||||||| ||| ||| ||| |||||
seq2  GGAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGGA  692

seq1  AGAAACAAAGATCCTAACTTTGGCCCGGCTGTGTGGGTGGCAGAAGGAGG  744
      ||                                        |||||| |
seq2  AG----------------------------------------GAAGGAAG  702

seq1  CAGGCAGGTAGGCAGAGAGGACCTCTCTGAGTTTGAGGTTACCAAAGCCT  794
            | |   |||| |       | ||| | |     ||| |  |   
seq2  ------GATTTTCAGACA-------TATGATTCTTCTAGTACTATTG---  736

seq1  ACAAAGGAAGTTCCAGGCAGGGATGCCAGGGCTACACCGAGAGAAACCCT  844
      || |  ||| ||  |  || | | ||       |||              
seq2  ACTATCGAATTTTGA-TCATGAAGGC-------ACA--------------  764

seq1  ATCTTGGGGAAAAAGAAAACAAAAGCAGAAAAAGTTCTGGCTTTTACTTT  894
         ||||                         | || ||  ||||  |||
seq2  ---TTGG-------------------------ATTTTTGTTTTTTGTTTT  786

seq1  CAGAC---ATATGATTCTTCTAGTAC---TATTGACTATCTAATTTTGAT  938
          |    | || || ||| || ||     ||  || | ||    ||  
seq2  TTTGCTTGTTTTGGTTTTTCGAG-ACAGGGTTTCTCTGTATAGCCCTGGC  835

seq1  CATGAAGGCACATTGGATTTTATGACA------------------GTGTG  970
        |   |||||||||||||||||||||                  |||||
seq2  TGTCCTGGCACATTGGATTTTATGACAGAGTGTGTGTGCATGTGTGTGTG  885

seq1  TGTGTGTGTGTGTGTGTGTGTGTGTGTGTAATATTTCTACTGTGATTGTG  1020
      ||||||||||||||||||||||||||| | ||| |||| ||||||||| |
seq2  TGTGTGTGTGTGTGTGTGTGTGTGTGTTTGATACTTCTGCTGTGATTGGG  935

seq1  GTAACTTGCACCCTAGTGGGCTTATGTTTGATTTCTGTAATCTTTTTTCT  1070
      ||||| ||||  ||||||||||||||||| ||||||||||||||||||||
seq2  GTAACCTGCAATCTAGTGGGCTTATGTTTTATTTCTGTAATCTTTTTTCT  985

seq1  AATTCTTTTTCATTTATATTT-TTATTTTATTTTATTTTGGGTTTTTTGT  1119
      ||||||||||||||| ||||| ||||||||||||||||    | |||| |
seq2  AATTCTTTTTCATTTCTATTTCTTATTTTATTTTATTT----TATTTTAT  1031

seq1  TTGTTTGTTTGTTTTGTTTTGTTTTTGTTTGTTTGTTTGTTTTTGAGACA  1169
      |  ||  ||| |||| |||| ||| | ||||||| ||| ||||  |||||
seq2  T--TTATTTTATTTTATTTTATTTAT-TTTGTTTTTTTTTTTTCCAGACA  1078

seq1  GGGTTTCTCCATATAGCCCTGGCTGTCCTGGAACTCACTGTGCTGACCAT  1219
      |||||||||| ||||||||||||||| |||||||||||| ||| ||||||
seq2  GGGTTTCTCCCTATAGCCCTGGCTGTTCTGGAACTCACTTTGCCGACCAT  1128

seq1  GACCATGATGGCCTTGAATTC  1240
      | ||||| |||||||||||||
seq2  GGCCATGGTGGCCTTGAATTC  1149