BAC Information

Click to search

BAC

Clone NameB6Ng01-061O09
Chromosome17 (Build37)
Map Location 15,879,254 - 16,004,589
singlet/doubletdoublet
Overlap geneChd1, Rgmb, LOC100041365, Eif3s6-ps3
Upstream geneWdr27, LOC664893, 1600012H06Rik, Phf10, LOC100041586, LOC100041574, LOC100041289, LOC100041639, LOC100041621, LOC100041301, 9030025P20Rik, Tcte3, C330048F19, LOC664953, Dll1, LOC100041314, 4932442K08Rik, Psmb1, Tbp, Pdcd2, LOC636398, Prdm9, EG626573, LOC665017, LOC100041775, 5830433I10Rik
Downstream geneLOC100041383, LOC100041394, LOC213781, LOC100041407, LOC665072, EG383211, LOC626785
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-061O09.bB6Ng01-061O09.g
ACCDH882454DH882455
length1,082935
definitionDH882454|Mus musculus domesticus DNA, BAC clone: B6Ng01-061O09, 5' end.DH882455|Mus musculus domesticus DNA, BAC clone: B6Ng01-061O09, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(15,879,254 - 15,880,354)(16,003,655 - 16,004,589)
sequence
gaattctataataaacaggaggccttacaagtaagactttttaactattt
ctattgctaaagcagaattctaagaatatgtatttcagttttaggataaa
aatagtagagtaatataatatattcatgtcaagttctctttggttaatgt
ttcatttaagtgatggtgttattatttgtatttatgaaagcttttaaaat
tataatttataaacatagtctttcaaaccagtgagttgtttctatttatc
agacaaaatctattagtgtcttagagattgtgatatggctaaatctgact
gtaaatagtagcctaaaggagggctttccttcatagatgttacccctctg
ttactgttgagaggcagttcagacgtgaagacacacttggaattcagtca
cagtagttcattgaggagtgagcatccctgaattagaaaagaatatgttt
gcttgctctgtgtttgtttagttgcttttttttttttttttaatgtatgt
ttgttttggctaaatcttagagaagtagtgtaagagctggcaagtagaat
gatacagcagaaataatagtcttgttatgcctggttagggcaggtttgat
gtacgtaatagaggaagatgggaaaagctctagacagttttgaaagccaa
agtaacttttctcttcagcattctgaaaagcttaaactctaaactggata
gagtagaaacaactgcagtattccgtggggctctggactgtttcctgctt
taccacgttgtaataggtgtactctgctgtttccttagcacttaatccgt
agtagcggaaaactcatcctttttggacaagctgttgattcgcctaagag
aaagaggccaccgagtgctcattttctctcagatggtgcggatgtagaca
tactcgcagagtatttgaagtaccgccagttcctctttcaggaagcattc
ttggttctatttttcattgtattcttgggctatttatgagtcactttaga
ttattttgcaataagtataattctctagactatggagagaacatgttact
tttttaagtttcatttatttctctaattattt
gaattctttgtctagtatttttcatctgaattgttctcagtgtgactatt
accaaggaattgatatgaagacctttgaaggttacatgttgactttgttt
ttcatgttgcctatatatttggaattgaatacctttgttagctgtgactt
tgggtgtgagcttctgacccatttcctgcaaatggctatatgggtggtct
ctacttgttgttacccttattggacttagaatcaacttagtgatgcttgc
agctcttttaggagcaggtggatgttgcaaaccggtactaaaatgctgga
aattggggagcagggttagaacagcctgaactgaaggtaagaaatatgtg
ccacacagatccagacacacagatggtgggagtgtgtcatgcgatctgga
caataagcaggtactgaggtgctaggaatcaggatactagaaaacaaaag
atgcagcttcagacctggggaggaatctctgctctagacctaagatgtca
gcattagggtgtcaaagggtgagagatatagtctctgactgggaagacaa
ttccatttgggtcctgaggcactgcagagtgagattcctgtgagatatga
gattcatatcagggttggggtgctagagggaagagtatacggcctctgac
ctagatcaagttgtgagatcctgaggtgttaggtagggttaggtgccaga
gtgcaggagacatggcctctgatctgagaagtgggccgcacttgggctca
aagacactgactggggtgctggagtggatgtgaaccctaacctagggagt
aagctccacagggggggtccctgcaattactgggggcttaggtatcaaag
tgtggctgatgttgacctctgactttggaatgaggtctgcggggatcatg
aggctcattttcaaaggtcaagaatgcagagatac
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr17_15879254_15880354
seq2: B6Ng01-061O09.b_46_1127

seq1  GAATTCTATAATAAACAGGAGGCCTTACAAGTAAGACTTTTTAACTATTT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTATAATAAACAGGAGGCCTTACAAGTAAGACTTTTTAACTATTT  50

seq1  CTATTGCTAAAGCAGAATTCTAAGAATATGTATTTCAGTTTTAGGATAAA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTATTGCTAAAGCAGAATTCTAAGAATATGTATTTCAGTTTTAGGATAAA  100

seq1  AATAGTAGAGTAATATAATATATTCATGTCAAGTTCTCTTTGGTTAATGT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATAGTAGAGTAATATAATATATTCATGTCAAGTTCTCTTTGGTTAATGT  150

seq1  TTCATTTAAGTGATGGTGTTATTATTTGTATTTATGAAAGCTTTTAAAAT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCATTTAAGTGATGGTGTTATTATTTGTATTTATGAAAGCTTTTAAAAT  200

seq1  TATAATTTATAAACATAGTCTTTCAAACCAGTGAGTTGTTTCTATTTATC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATAATTTATAAACATAGTCTTTCAAACCAGTGAGTTGTTTCTATTTATC  250

seq1  AGACAAAATCTATTAGTGTCTTAGAGATTGTGATATGGCTAAATCTGACT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGACAAAATCTATTAGTGTCTTAGAGATTGTGATATGGCTAAATCTGACT  300

seq1  GTAAATAGTAGCCTAAAGGAGGGCTTTCCTTCATAGATGTTACCCCTCTG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAAATAGTAGCCTAAAGGAGGGCTTTCCTTCATAGATGTTACCCCTCTG  350

seq1  TTACTGTTGAGAGGCAGTTCAGACGTGAAGACACACTTGGAATTCAGTCA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTACTGTTGAGAGGCAGTTCAGACGTGAAGACACACTTGGAATTCAGTCA  400

seq1  CAGTAGTTCATTGAGGAGTGAGCATCCCTGAATTAGAAAAGAATATGTTT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGTAGTTCATTGAGGAGTGAGCATCCCTGAATTAGAAAAGAATATGTTT  450

seq1  GCTTGCTCTGTGTTTGTTTAGTTGCTTTTTTTTTTTTTTTTAATGTATGT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTTGCTCTGTGTTTGTTTAGTTGCTTTTTTTTTTTTTTTTAATGTATGT  500

seq1  TTGTTTTGGCTAAATCTTAGAGAAGTAGTGTAAGAGCTGGCAAGTAGAAT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTTTTGGCTAAATCTTAGAGAAGTAGTGTAAGAGCTGGCAAGTAGAAT  550

seq1  GATACAGCAGAAATAATAGTCTTGTTATGCCTGGTTAGGGCAGGTTTGAT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATACAGCAGAAATAATAGTCTTGTTATGCCTGGTTAGGGCAGGTTTGAT  600

seq1  GTACGTAATAGAGGAAGATGGGAAAAGCTCTAGACAGTTTTGAAAGCCAA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTACGTAATAGAGGAAGATGGGAAAAGCTCTAGACAGTTTTGAAAGCCAA  650

seq1  AGTAACTTTTCTCTTCAGCATTCTGAAAAGCTTAAACTCTAAACTGGATA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTAACTTTTCTCTTCAGCATTCTGAAAAGCTTAAACTCTAAACTGGATA  700

seq1  GAGTAGAAACAACTGCAGTATTCCGTGGGGCTCTGGACTGTTTCCTGCTT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGTAGAAACAACTGCAGTATTCCGTGGGGCTCTGGACTGTTTCCTGCTT  750

seq1  TACCACGTTGTAATAGGTGTACTCTGCTGTTTCCTTAGCACTTAATCCGT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACCACGTTGTAATAGGTGTACTCTGCTGTTTCCTTAGCACTTAATCCGT  800

seq1  AGTAGCGGAAAACTCATCC-TTCTCGACAAGCTGTTGATTCGCCTAAGAG  849
      ||||||||||||||||||| || | |||||||||||||||||||||||||
seq2  AGTAGCGGAAAACTCATCCTTTTTGGACAAGCTGTTGATTCGCCTAAGAG  850

seq1  AAAGAGGCAACCGAGTGCTCATTTTCTCTCAGATGGTGCGGATGTTAGAC  899
      |||||||| ||||||||||||||||||||||||||||||||||| |||||
seq2  AAAGAGGCCACCGAGTGCTCATTTTCTCTCAGATGGTGCGGATG-TAGAC  899

seq1  ATACTCGCAGAGTATTTGAAGTACCGCCAGTTCCCCTTTCAAGTAAGCAT  949
      |||||||||||||||||||||||||||||||||| ||||| || ||||| 
seq2  ATACTCGCAGAGTATTTGAAGTACCGCCAGTTCCTCTTTC-AGGAAGCA-  947

seq1  TTCTTGGTTTCTATTTTTCATTGTATTCTTGGGCTTATTTTATTGAGTCA  999
      ||||||| |||||||||||||||||||||||||| |||||   |||||||
seq2  TTCTTGG-TTCTATTTTTCATTGTATTCTTGGGC-TATTT--ATGAGTCA  993

seq1  CTTTTTAGATTATTTTGCATATAAATTATATTTCTCTTAAACATACTGAG  1049
      |  |||||||||||||||| || || |||| ||||| || || ||  |||
seq2  C--TTTAGATTATTTTGCA-AT-AAGTATAATTCTC-TAGAC-TATGGAG  1037

seq1  AGAATCATTTGTTACTTTTCTAAGTTTCATTTTTTTTCTCTAAATTTTAT  1099
      |||| ||  |||||||||| ||||||||| ||| |||||||||   ||||
seq2  AGAA-CA--TGTTACTTTTTTAAGTTTCA-TTTATTTCTCTAA---TTAT  1080

seq1  TT  1101
      ||
seq2  TT  1082

seq1: chr17_16003655_16004589
seq2: B6Ng01-061O09.g_71_1005 (reverse)

seq1  GTATCTCTGCATCTTTGACCTTTG-AAATGAGCCTCATGATCCCCGCAGA  49
      ||||||||||||  |||||||||| |||||||||||||||||||||||||
seq2  GTATCTCTGCATTCTTGACCTTTGAAAATGAGCCTCATGATCCCCGCAGA  50

seq1  CCTCATTCCAAAGGTCAGAGGTC-ACATCAGCCACACTCTGATACCCTAG  98
      |||||||||||| |||||||||| |||||||||||||| ||||| |||| 
seq2  CCTCATTCCAAA-GTCAGAGGTCAACATCAGCCACACTTTGATA-CCTAA  98

seq1  GCCCCCAGTAATTGCAGGGACCCCCCCTGTGGAGCTTACTCCCTAGGTTA  148
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCCCCAGTAATTGCAGGGACCCCCCCTGTGGAGCTTACTCCCTAGGTTA  148

seq1  GGGTTCACATCCACTCCAGCACCCCAGTCAGTGTCTTTGAGCCCAAGTGC  198
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGTTCACATCCACTCCAGCACCCCAGTCAGTGTCTTTGAGCCCAAGTGC  198

seq1  GGCCCACTTCTCAGATCAGAGGCCATGTCTCCTGCACTCTGGCACCTAAC  248
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCCCACTTCTCAGATCAGAGGCCATGTCTCCTGCACTCTGGCACCTAAC  248

seq1  CCTACCTAACACCTCAGGATCTCACAACTTGATCTAGGTCAGAGGCCGTA  298
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTACCTAACACCTCAGGATCTCACAACTTGATCTAGGTCAGAGGCCGTA  298

seq1  TACTCTTCCCTCTAGCACCCCAACCCTGATATGAATCTCATATCTCACAG  348
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACTCTTCCCTCTAGCACCCCAACCCTGATATGAATCTCATATCTCACAG  348

seq1  GAATCTCACTCTGCAGTGCCTCAGGACCCAAATGGAATTGTCTTCCCAGT  398
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATCTCACTCTGCAGTGCCTCAGGACCCAAATGGAATTGTCTTCCCAGT  398

seq1  CAGAGACTATATCTCTCACCCTTTGACACCCTAATGCTGACATCTTAGGT  448
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGAGACTATATCTCTCACCCTTTGACACCCTAATGCTGACATCTTAGGT  448

seq1  CTAGAGCAGAGATTCCTCCCCAGGTCTGAAGCTGCATCTTTTGTTTTCTA  498
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAGAGCAGAGATTCCTCCCCAGGTCTGAAGCTGCATCTTTTGTTTTCTA  498

seq1  GTATCCTGATTCCTAGCACCTCAGTACCTGCTTATTGTCCAGATCGCATG  548
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTATCCTGATTCCTAGCACCTCAGTACCTGCTTATTGTCCAGATCGCATG  548

seq1  ACACACTCCCACCATCTGTGTGTCTGGATCTGTGTGGCACATATTTCTTA  598
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACACTCCCACCATCTGTGTGTCTGGATCTGTGTGGCACATATTTCTTA  598

seq1  CCTTCAGTTCAGGCTGTTCTAACCCTGCTCCCCAATTTCCAGCATTTTAG  648
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTCAGTTCAGGCTGTTCTAACCCTGCTCCCCAATTTCCAGCATTTTAG  648

seq1  TACCGGTTTGCAACATCCACCTGCTCCTAAAAGAGCTGCAAGCATCACTA  698
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACCGGTTTGCAACATCCACCTGCTCCTAAAAGAGCTGCAAGCATCACTA  698

seq1  AGTTGATTCTAAGTCCAATAAGGGTAACAACAAGTAGAGACCACCCATAT  748
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTGATTCTAAGTCCAATAAGGGTAACAACAAGTAGAGACCACCCATAT  748

seq1  AGCCATTTGCAGGAAATGGGTCAGAAGCTCACACCCAAAGTCACAGCTAA  798
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCCATTTGCAGGAAATGGGTCAGAAGCTCACACCCAAAGTCACAGCTAA  798

seq1  CAAAGGTATTCAATTCCAAATATATAGGCAACATGAAAAACAAAGTCAAC  848
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAAGGTATTCAATTCCAAATATATAGGCAACATGAAAAACAAAGTCAAC  848

seq1  ATGTAACCTTCAAAGGTCTTCATATCAATTCCTTGGTAATAGTCACACTG  898
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTAACCTTCAAAGGTCTTCATATCAATTCCTTGGTAATAGTCACACTG  898

seq1  AGAACAATTCAGATGAAAAATACTAGACAAAGAATTC  935
      |||||||||||||||||||||||||||||||||||||
seq2  AGAACAATTCAGATGAAAAATACTAGACAAAGAATTC  935