BAC Information

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BAC

Clone NameB6Ng01-062N03
Chromosome17 (Build37)
Map Location 78,530,476 - 78,687,722
singlet/doubletdoublet
Overlap geneLOC383275, Crim1
Upstream geneLOC545234, LOC100043887, LOC668795
Downstream geneFez2, LOC100043888, Hdac1-ps, Vit, Strn, Heatr5b, 2310002B06Rik, EG625054, Eif2ak2, 2410078J06Rik, Cebpz, 2410091C18Rik, Prkcn, LOC675425, Qpct, LOC668812, LOC383277
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-062N03.bB6Ng01-062N03.g
ACCDH883094DH883095
length1,1381,146
definitionDH883094|Mus musculus domesticus DNA, BAC clone: B6Ng01-062N03, 5' end.DH883095|Mus musculus domesticus DNA, BAC clone: B6Ng01-062N03, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(78,530,476 - 78,531,626)(78,686,540 - 78,687,722)
sequence
gaattcttatacttagatatataatctaaagaaattgacctcattaaaaa
cagagcgatttggaattagcaaaagctaggtatggaaaataagataatca
aatatctataaatgtatctatagttattcttcagtaaaaccaaaacaaat
tggagatatgcctccaaaacttgggagaaaagagcaagcttagaaaaaaa
gaatcctaaagtctaacatctcagtaacattaaaaccatggcattaaaca
gaattgccaaaatggagtaacaagcccagaagccctactgcaggagagag
gggcaaaggagcagaaaattgggaaagaatacccagtggaaaaaaagaaa
ataattgataagctataaagaggaggcatttcaaagagaaggattgacta
tgccaagatggagtagggtaacttcttaccactgatatgtcaagcggaaa
attgtcagcttccttggtaagcactttgttttaaattgctctgtgcccga
tgttgaaaatgcctggaattataataaagactgtaataagacggatgact
ggttgctgagagttaggaaatagaatctgcagcaaaggagacttttagga
cctgccaccactctctaggacgctatgatgccttttcacatttgcccaat
tccatacatcaccaagaatgagccttaatgtaaactgtggcgtctgtgtg
gtaatgatgcattgttgattttaaacaactactcaatctggtggcaatac
tgataaaaaggaagatagtgagccgaggaggagagttatgtgagaaatgg
ctagacctttctctcaatgtctcctctaaatcttgtaaatattgaagtgt
tcttaatttgaatcaagccttctggaatgcctcagtaggtaaagcagaaa
gcataatgttcatcccttgaaatttacagtctaatatgtgtgtctttagt
ttgcttctttaattgtgtatagagatttgtaatccaacatgtattaagtt
ttcatgtaagagttgagacttcaaagaatttggattctttggcttttctc
ttctctacaaatgtgataaattacactaagaaaaaatggaacattttcat
tttatactgcatgtagtagtggaaggcgagtcaccatt
gaattcctaggtttcccttctgttttgttttgttttgttctcctaagaag
ttcctaacacgaatgtctggggtttcgtccaattgagaagattcggacaa
gtcgaggaacccagaggtgaaagcgacttctcagatcatgcaaccctttc
ctgcctttcttcctggctcagagcaagaatccgctcctttcaggcagagg
caggccttgactctagtgccccagttcatgtgacacagcgaatatacgcc
atctaccaaatgcactgtgcccaggcacacatctgctcacagatgacaat
cacagagggaaggtctggtctcctgagtggctgcactggggacactatgg
cggttgacagtgacttggctcacaggggacaaaccagccgggtggttcat
gctcagccaggcaggctctgttgctgttctaggcagggagcttggtgtcc
cacacactgtgcctgtgaggagggagcacggggtcgaacttgctaactgg
attgagctgcaagattcagcttctttccctcaacttttcttggacccttc
acgtggtaaacatacgctaagaactttttcttggcgaagcaaggagccac
acattaacattttcactcaggtaatctaaagattttttttttaattatct
tagagctgggaaaaaataatgaacttaaaaaattttgagttaaaaattaa
aaaacaagatttttgatgtagtgtctcaaaaaacacgaggtataaatgct
ctgggttttggttctggaagggagtcaggccctttggtcaagagagaggc
aggagccaaaagggagcttgggaacccggcatccacagcatacacaaccc
agaacaaagtctattttaagcttctgggtatcataacaatgacttaattt
atttcaaactcaaaatactggcttgcatttttttcttcataacttttagg
agacattatttataggtagaattgatacataatgttccgactaggagttt
agacactctcataaatttagatgatgactacccatacttatagtaatgga
tcgtcagtaacatccaaaatcaaggcatgatgctcttcataataggctga
ctcaggacgtaaggaatcctgcctcaattaacggtttgctgtctgc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr17_78530476_78531626
seq2: B6Ng01-062N03.b_46_1183

seq1  GAATTCTTATACTTAGATATATAATCTAAAGAAATTGACCTCATTAAAAA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTTATACTTAGATATATAATCTAAAGAAATTGACCTCATTAAAAA  50

seq1  CAGAGCGATTTGGAATTAGCAAAAGCTAGGTATGGAAAATAAGATAATCA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGAGCGATTTGGAATTAGCAAAAGCTAGGTATGGAAAATAAGATAATCA  100

seq1  AATATCTATAAATGTATCTATAGTTATTCTTCAGTAAAACCAAAACAAAT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATATCTATAAATGTATCTATAGTTATTCTTCAGTAAAACCAAAACAAAT  150

seq1  TGGAGATATGCCTCCAAAACTTGGGAGAAAAGAGCAAGCTTAGAAAAAAA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGAGATATGCCTCCAAAACTTGGGAGAAAAGAGCAAGCTTAGAAAAAAA  200

seq1  GAATCCTAAAGTCTAACATCTCAGTAACATTAAAACCATGGCATTAAACA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATCCTAAAGTCTAACATCTCAGTAACATTAAAACCATGGCATTAAACA  250

seq1  GAATTGCCAAAATGGAGTAACAAGCCCAGAAGCCCTACTGCAGGAGAGAG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTGCCAAAATGGAGTAACAAGCCCAGAAGCCCTACTGCAGGAGAGAG  300

seq1  GGGCAAAGGAGCAGAAAATTGGGAAAGAATACCCAGTGGAAAAAAAGAAA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGCAAAGGAGCAGAAAATTGGGAAAGAATACCCAGTGGAAAAAAAGAAA  350

seq1  ATAATTGATAAGCTATAAAGAGGAGGCATTTCAAAGAGAAGGATTGACTA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAATTGATAAGCTATAAAGAGGAGGCATTTCAAAGAGAAGGATTGACTA  400

seq1  TGCCAAGATGGAGTAGGGTAACTTCTTACCACTGATATGTCAAGCGGAAA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCCAAGATGGAGTAGGGTAACTTCTTACCACTGATATGTCAAGCGGAAA  450

seq1  ATTGTCAGCTTCCTTGGTAAGCACTTTGTTTTAAATTGCTCTGTGCCCGA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTGTCAGCTTCCTTGGTAAGCACTTTGTTTTAAATTGCTCTGTGCCCGA  500

seq1  TGTTGAAAATGCCTGGAATTATAATAAAGACTGTAATAAGACGGATGACT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTGAAAATGCCTGGAATTATAATAAAGACTGTAATAAGACGGATGACT  550

seq1  GGTTGCTGAGAGTTAGGAAATAGAATCTGCAGCAAAGGAGACTTTTAGGA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTTGCTGAGAGTTAGGAAATAGAATCTGCAGCAAAGGAGACTTTTAGGA  600

seq1  CCTGCCACCACTCTCTAGGACGCTATGATGCCTTTTCACATTTGCCCAAT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGCCACCACTCTCTAGGACGCTATGATGCCTTTTCACATTTGCCCAAT  650

seq1  TCCATACATCACCAAGAATGAGCCTTAATGTAAACTGTGGCGTCTGTGTG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCATACATCACCAAGAATGAGCCTTAATGTAAACTGTGGCGTCTGTGTG  700

seq1  GTAATGATGCATTGTTGATTTTAAACAACTACTCAATCTGGTGGCAATAC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAATGATGCATTGTTGATTTTAAACAACTACTCAATCTGGTGGCAATAC  750

seq1  TGATAAAAAGGAAGATAGTGAGCCGAGGAGGAGAGTTATGTGAGAAATGG  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGATAAAAAGGAAGATAGTGAGCCGAGGAGGAGAGTTATGTGAGAAATGG  800

seq1  CTAGACCTTTCTCTCAATGTCTCCTCTAAATCTTGTAAATATTGAAGTGT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAGACCTTTCTCTCAATGTCTCCTCTAAATCTTGTAAATATTGAAGTGT  850

seq1  TCTTAATTTGAATCAAGCCTTCTGGAAATGCCTCAGTAGGTAAAGCAGAA  900
      ||||||||||||||||||||||||| ||||||||||||||||||||||||
seq2  TCTTAATTTGAATCAAGCCTTCTGG-AATGCCTCAGTAGGTAAAGCAGAA  899

seq1  AGCATAATGTTCATCCCTTGAAATTTACAGTCTAATATGTGTGTCTTTAG  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCATAATGTTCATCCCTTGAAATTTACAGTCTAATATGTGTGTCTTTAG  949

seq1  TTTGCTTCTTTAATTGTGTATAGAGATTTGTAATCCAACATGTAATTAAG  1000
      ||||||||||||||||||||||||||||||||||||||||||| ||||||
seq2  TTTGCTTCTTTAATTGTGTATAGAGATTTGTAATCCAACATGT-ATTAAG  998

seq1  TTTTCAATGTAAAGAGTTGAGAACTTCAAAAGAAATTTGAATTCTTTGGC  1050
      ||||| |||| |||||||||| ||||||||   |||||| ||||||||||
seq2  TTTTC-ATGT-AAGAGTTGAG-ACTTCAAA--GAATTTGGATTCTTTGGC  1043

seq1  -TTTCTCTCCTCTACAAAATGTGAATAAAATTACACTAAAGAAAAAAATG  1099
       ||||||| |||||| ||||||||   ||||||||||||   ||||||||
seq2  TTTTCTCTTCTCTAC-AAATGTGA--TAAATTACACTAA--GAAAAAATG  1088

seq1  AAACATTTTCATTTTAATACTGCATGTAGTAGTGGAAGGGCGAGTCACCA  1149
       |||||||||||||| ||||||||||||||||||||| ||||||||||||
seq2  GAACATTTTCATTTT-ATACTGCATGTAGTAGTGGAA-GGCGAGTCACCA  1136

seq1  TT  1151
      ||
seq2  TT  1138

seq1: chr17_78686540_78687722
seq2: B6Ng01-062N03.g_69_1214 (reverse)

seq1  GCAGACAGCAAACTGTTAAAATTTGGAGGCAGCGATACCACTACACGTCA  50
      ||||||||||||| |||||    | ||||||| ||| ||     ||||| 
seq2  GCAGACAGCAAACCGTTAA----TTGAGGCAG-GATTCC---TTACGTC-  41

seq1  CTGGAAGTCAGCCTAATTATGGAGAGCATTCCATGCCTTTTGGTATTTTT  100
      |||  ||||||||| |||||| |||||||  ||||||||        |||
seq2  CTG--AGTCAGCCT-ATTATGAAGAGCAT--CATGCCTT------GATTT  80

seq1  TGAATGTTACTGACGAATTCATTTACTATATAGTATGGGTAGTCATTCAT  150
      || |||||||||||||  ||  |||||||| |||||||||||||| ||| 
seq2  TGGATGTTACTGACGA--TCCATTACTATA-AGTATGGGTAGTCA-TCA-  125

seq1  TCTAAATTTAATGAGAGTTGTCTTAAACTCTTAAGTTCTGAAACATTATG  200
      ||||||||| ||||||| |||| ||||||| | |||   | |||||||||
seq2  TCTAAATTT-ATGAGAG-TGTC-TAAACTCCT-AGT--CGGAACATTATG  169

seq1  TTATCAATTTCTACCTATAAATAATGTCTTCCTTAAAAGTTATTGAAG-A  249
       |||||| |||||||||||||||||||||  | ||||||||| ||||| |
seq2  -TATCAA-TTCTACCTATAAATAATGTCT--CCTAAAAGTTA-TGAAGAA  214

seq1  AAAAATGCAAGCCAGTTATTTTGAGTTTGAAATAAATTAAGTCATTGTTT  299
      ||||||||||||||| ||||||||||||||||||||||||||||||| ||
seq2  AAAAATGCAAGCCAG-TATTTTGAGTTTGAAATAAATTAAGTCATTG-TT  262

seq1  ATGATACCCAGAAGCTTAAAATAGACTTTGTTCTGGGTTGTGTATGCTGT  349
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGATACCCAGAAGCTTAAAATAGACTTTGTTCTGGGTTGTGTATGCTGT  312

seq1  GGATGCCGGGTTCCCAAGCTCCCTTTTGGCTCCTGCCTCTCTCTTGACCA  399
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGATGCCGGGTTCCCAAGCTCCCTTTTGGCTCCTGCCTCTCTCTTGACCA  362

seq1  AAGGGCCTGACTCCCTTCCAGAACCAAAACCCAGAGCATTTATACCTCGT  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGGCCTGACTCCCTTCCAGAACCAAAACCCAGAGCATTTATACCTCGT  412

seq1  GTTTTTTGAGACACTACATCAAAAATCTTGTTTTTTAATTTTTAACTCAA  499
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTTTTGAGACACTACATCAAAAATCTTGTTTTTTAATTTTTAACTCAA  462

seq1  AATTTTTTAAGTTCATTATTTTTTCCCAGCTCTAAGATAATTAAAAAAAA  549
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTTTTTAAGTTCATTATTTTTTCCCAGCTCTAAGATAATTAAAAAAAA  512

seq1  AATCTTTAGATTACCTGAGTGAAAATGTTAATGTGTGGCTCCTTGCTTCG  599
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATCTTTAGATTACCTGAGTGAAAATGTTAATGTGTGGCTCCTTGCTTCG  562

seq1  CCAAGAAAAAGTTCTTAGCGTATGTTTACCACGTGAAGGGTCCAAGAAAA  649
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAAGAAAAAGTTCTTAGCGTATGTTTACCACGTGAAGGGTCCAAGAAAA  612

seq1  GTTGAGGGAAAGAAGCTGAATCTTGCAGCTCAATCCAGTTAGCAAGTTCG  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTGAGGGAAAGAAGCTGAATCTTGCAGCTCAATCCAGTTAGCAAGTTCG  662

seq1  ACCCCGTGCTCCCTCCTCACAGGCACAGTGTGTGGGACACCAAGCTCCCT  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCCCGTGCTCCCTCCTCACAGGCACAGTGTGTGGGACACCAAGCTCCCT  712

seq1  GCCTAGAACAGCAACAGAGCCTGCCTGGCTGAGCATGAACCACCCGGCTG  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCTAGAACAGCAACAGAGCCTGCCTGGCTGAGCATGAACCACCCGGCTG  762

seq1  GTTTGTCCCCTGTGAGCCAAGTCACTGTCAACCGCCATAGTGTCCCCAGT  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTGTCCCCTGTGAGCCAAGTCACTGTCAACCGCCATAGTGTCCCCAGT  812

seq1  GCAGCCACTCAGGAGACCAGACCTTCCCTCTGTGATTGTCATCTGTGAGC  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAGCCACTCAGGAGACCAGACCTTCCCTCTGTGATTGTCATCTGTGAGC  862

seq1  AGATGTGTGCCTGGGCACAGTGCATTTGGTAGATGGCGTATATTCGCTGT  949
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATGTGTGCCTGGGCACAGTGCATTTGGTAGATGGCGTATATTCGCTGT  912

seq1  GTCACATGAACTGGGGCACTAGAGTCAAGGCCTGCCTCTGCCTGAAAGGA  999
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCACATGAACTGGGGCACTAGAGTCAAGGCCTGCCTCTGCCTGAAAGGA  962

seq1  GCGGATTCTTGCTCTGAGCCAGGAAGAAAGGCAGGAAAGGGTTGCATGAT  1049
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCGGATTCTTGCTCTGAGCCAGGAAGAAAGGCAGGAAAGGGTTGCATGAT  1012

seq1  CTGAGAAGTCGCTTTCACCTCTGGGTTCCTCGACTTGTCCGAATCTTCTC  1099
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGAGAAGTCGCTTTCACCTCTGGGTTCCTCGACTTGTCCGAATCTTCTC  1062

seq1  AATTGGACGAAACCCCAGACATTCGTGTTAGGAACTTCTTAGGAGAACAA  1149
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTGGACGAAACCCCAGACATTCGTGTTAGGAACTTCTTAGGAGAACAA  1112

seq1  AACAAAACAAAACAGAAGGGAAACCTAGGAATTC  1183
      ||||||||||||||||||||||||||||||||||
seq2  AACAAAACAAAACAGAAGGGAAACCTAGGAATTC  1146