BAC Information

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BAC

Clone NameB6Ng01-063O15
Chromosome17 (Build37)
Map Location 19,317,522 - 19,318,712
singlet/doubletsinglet
Overlap geneLOC665344
Upstream geneVmn2r92, EG665227, EG627132, LOC100041612, Vmn2r95, Vmn2r-ps114, EG433070, Vmn2r-ps115, Vmn2r-ps117, LOC100042183, EG627367, EG224552
Downstream geneLOC627466, LOC627476, EG665371, EG665376, EG627537, EG627576, EG224572, EG627618, EG627636, LOC100042273, LOC210465, LOC670534, EG627664, V2r7, LOC100041856, EG545190, Fpr-rs7
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-063O15.bB6Ng01-063O15.g
ACCDH883863DH883864
length1,1831,242
definitionDH883863|Mus musculus domesticus DNA, BAC clone: B6Ng01-063O15, 5' end.DH883864|Mus musculus domesticus DNA, BAC clone: B6Ng01-063O15, 3' end.
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
gaattcaatagaacctatagtaaggtcctgactgtgaaagactagaaatt
gagttccattcaaagaaaccatatgagcatataaggagtaacttgtgggt
atatagttgtttactggcctctatatttttgacacatgcatacacccaca
ctgttgtactatggacacttatataagaatattatgtgacttaggttgaa
aaattttgcctccacttcaattacttttcttaagaaattatgtaacatct
gtctacaagcaaactgttaagtgtaccttctagatttccttcttgtcttt
cctgaaagttctgatcactgtttctcagtgactctccagatgtctgacat
ggccataagtgttatgtggcaagtcaatgtcattttgttctccagagatt
tctcacaggctactcaaagctttaataaaaatcttcaattgatcctgccc
attttaccagttcttttctagctttggttgttttaagaatagtatggatt
ctgaaaacaattttccaacatctgagtgaggtggtccctgttctcttaaa
tacttcttcaatagtatatctgtttctgaaatacatcttctaaagggtcc
atgtagctcagagtcccaaatagagatttaagcctcctccttaagtaccc
ctttccagacaggactccccaaacatttactagctagtaaaaccatatgc
tccttttctgagcccactctaatttatacttatgagatacagatttctac
ccttttgggagtctgttccttttccccaaagttaaagtttcacactactc
aaaactgtgcctgtggacatcaggaaatttgttattaacacagtttcaat
gagagaccttgtctcaaaattcacacgaacagctacattttccacatttt
aggattaatcaaaaacataacttgacaccaatactctttgctcaagaatc
attgacaaaactattcacatgcctgcagaattatattactggcatatctt
tcaacaagtacatagctaattcaaattaaattaggagatactcactgcat
gtctgaaaatttattattcatgaaaaaaaaaaaaaaaaatggcatatact
taaccttcaaataccaccctctggaaaaagattttaaccacactatgtga
agtgatcttccaaacccaataaggaattcttaa
gaattcagttaacacagttggtgttttctactctctgaaacatcttttta
cctgtttaattatacggtttgttgaaaaataccctttactctgaaaggct
caaaatccacacttacaaaatagtcttacttaatgtacctgttaaagtgg
atcactgaaaaaaaatgtcactaatttttcattatataatttttcttatc
ccccagtgctaaaaatttatggcaaaagctgtggaaagtaactaagaacc
agaggttaacaataaccttagggaaaaaaatgaattctccagacaagtgg
gaaattttatttaagatctcagcctaaatataataacatataatgatctg
tgaatgttcaagtgaatcaaaacaagcgaggaaaattgaggtcagcatga
agtccaaaccatatctaagtgggaattcttagtgagtgatttattgctat
aaggagacataatgaccatggctattctcataaaggaaaacaatttactg
gggctagcttacaatttcatagttttagtctattattgtcatggtgggaa
ccatgactgtattcctgcagaaatggtcttcaaaattcaagtgacagttt
tatatccaaatccacaggcacctaaagtagaaactagagcacactgacta
gactagttcttctcagaactgtaactctaccaaaaaagtgatagacttcc
tttaacaagtccatgcctactccaacaaagacacatatcctaatagtgcc
acacagcatggtcaaacatctaaacagaatagtgtatggagccattcctg
tacaaaccactacattctattccttgacaatgatagtcttgtagccataa
aatagtgcaaaatagatttagttcattttaatttcccataatctaaaaca
gcctcaagtttgtttgaagtccaaagttcaaagtttcctctgaaatatgt
gtaacatgcaatataatcacttgaaaataaaaataaaatgtagattacat
actccacaattaatggaacataatatcatttaaattggagaaaaagggat
tttagtcagaaataatgtaccaagcaaatcaatacaagctggagcaaacc
tcaaattgcagcccaatcggatataaatttctttaccctccaatccttca
ttcattggacttctaaacctcttcctgggcttttcatcccggtcataagc
gcgtggggcaaattacccaagcctgtcgtatcatctcacaga
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr17_19317522_19318712
seq2: B6Ng01-063O15.b_49_1231

seq1  GAATTCAATAGAACCTATAGTAAGGTCCTGACTGTGAAAGACTAGAAATT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAATAGAACCTATAGTAAGGTCCTGACTGTGAAAGACTAGAAATT  50

seq1  GAGTTCCATTCAAAGAAACCATATGAGCATATAAGGAGTAACTTGTGGGT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGTTCCATTCAAAGAAACCATATGAGCATATAAGGAGTAACTTGTGGGT  100

seq1  ATATAGTTGTTTACTGGCCTCTATATTTTTGACACATGCATACACCCACA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATAGTTGTTTACTGGCCTCTATATTTTTGACACATGCATACACCCACA  150

seq1  CTGTTGTACTATGGACACTTATATAAGAATATTATGTGACTTAGGTTGAA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTTGTACTATGGACACTTATATAAGAATATTATGTGACTTAGGTTGAA  200

seq1  AAATTTTGCCTCCACTTCAATTACTTTTCTTAAGAAATTATGTAACATCT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATTTTGCCTCCACTTCAATTACTTTTCTTAAGAAATTATGTAACATCT  250

seq1  GTCTACAAGCAAACTGTTAAGTGTACCTTCTAGATTTCCTTCTTGTCTTT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCTACAAGCAAACTGTTAAGTGTACCTTCTAGATTTCCTTCTTGTCTTT  300

seq1  CCTGAAAGTTCTGATCACTGTTTCTCAGTGACTCTCCAGATGTCTGACAT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGAAAGTTCTGATCACTGTTTCTCAGTGACTCTCCAGATGTCTGACAT  350

seq1  GGCCATAAGTGTTATGTGGCAAGTCAATGTCATTTTGTTCTCCAGAGATT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCCATAAGTGTTATGTGGCAAGTCAATGTCATTTTGTTCTCCAGAGATT  400

seq1  TCTCACAGGCTACTCAAAGCTTTAATAAAAATCTTCAATTGATCCTGCCC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCACAGGCTACTCAAAGCTTTAATAAAAATCTTCAATTGATCCTGCCC  450

seq1  ATTTTACCAGTTCTTTTCTAGCTTTGGTTGTTTTAAGAATAGTATGGATT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTTACCAGTTCTTTTCTAGCTTTGGTTGTTTTAAGAATAGTATGGATT  500

seq1  CTGAAAACAATTTTCCAACATCTGAGTGAGGTGGTCCCTGTTCTCTTAAA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGAAAACAATTTTCCAACATCTGAGTGAGGTGGTCCCTGTTCTCTTAAA  550

seq1  TACTTCTTCAATAGTATATCTGTTTCTGAAATACATCTTCTAAAGGGTCC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACTTCTTCAATAGTATATCTGTTTCTGAAATACATCTTCTAAAGGGTCC  600

seq1  ATGTAGCTCAGAGTCCCAAATAGAGATTTAAGCCTCCTCCTTAAGTACCC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTAGCTCAGAGTCCCAAATAGAGATTTAAGCCTCCTCCTTAAGTACCC  650

seq1  CTTTCCAGACAGGACTCCCCAAACATTTACTAGCTAGTAAAACCATATGC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTCCAGACAGGACTCCCCAAACATTTACTAGCTAGTAAAACCATATGC  700

seq1  TCCTTTTCTGAGCCCACTCTAATTTATACTTATGAGATACAGATTTCTAC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTTTTCTGAGCCCACTCTAATTTATACTTATGAGATACAGATTTCTAC  750

seq1  CCTTTTGGGAGTCTGTTCCTTTTCCCCAAAGTTAAAGTTTCACACTACTC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTTTGGGAGTCTGTTCCTTTTCCCCAAAGTTAAAGTTTCACACTACTC  800

seq1  AAAACTGTGCCTGTGGACATCAGGAAATTTGTTATTAACACAGTTTCAAT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAACTGTGCCTGTGGACATCAGGAAATTTGTTATTAACACAGTTTCAAT  850

seq1  GAGAGACCTTGTCTCAAAATTCACACGAACAGCTACATTTTCCACATTTT  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGAGACCTTGTCTCAAAATTCACACGAACAGCTACATTTTCCACATTTT  900

seq1  AGGAATAAATCAAAAACATAACTTGACACCAATACTCTTTGCTCAAGAAT  950
      ||| || |||||||||||||||||||||||||||||||||||||||||||
seq2  AGG-ATTAATCAAAAACATAACTTGACACCAATACTCTTTGCTCAAGAAT  949

seq1  CATTGACAAAACTATTCACATGCCTGCAGAATTATATTACTGGCATATCT  1000
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTGACAAAACTATTCACATGCCTGCAGAATTATATTACTGGCATATCT  999

seq1  TTCAACAAGTACATAGCTAAATTCAAATTAAATTA-GAGATACTCACTGC  1049
      |||||||||||||||||| |||||||||||||||| ||||||||||||||
seq2  TTCAACAAGTACATAGCT-AATTCAAATTAAATTAGGAGATACTCACTGC  1048

seq1  ATGTCTGAAACATTTAATTATCCATGAAAAAAAAAAAAAAACAAATGGCA  1099
      |||||||||| |||| ||||| ||||||||||||||||||  ||||||||
seq2  ATGTCTGAAA-ATTT-ATTATTCATGAAAAAAAAAAAAAA--AAATGGCA  1094

seq1  TATACTTAAACTTACAAATACAAACTCTCTGAAAAAAGATTTTAGC--AA  1147
      ||||||||| ||| |||||||  || ||||| |||||||||||| |   |
seq2  TATACTTAACCTT-CAAATAC-CACCCTCTGGAAAAAGATTTTAACCACA  1142

seq1  CTA-GTG-AGTGATCTTCAAAACACCAATAAATGAGAATTCATTAA  1191
      ||| ||| |||||||||| |||| |||||||    |||||| ||||
seq2  CTATGTGAAGTGATCTTCCAAAC-CCAATAA---GGAATTC-TTAA  1183