BAC Information

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BAC

Clone NameB6Ng01-064O21
Chromosome17 (Build37)
Map Location 15,798,077 - 15,848,167
singlet/doubletdoublet
Overlap gene5830433I10Rik, Chd1
Upstream geneThbs2, LOC100041236, Wdr27, LOC664893, 1600012H06Rik, Phf10, LOC100041586, LOC100041574, LOC100041289, LOC100041639, LOC100041621, LOC100041301, 9030025P20Rik, Tcte3, C330048F19, LOC664953, Dll1, LOC100041314, 4932442K08Rik, Psmb1, Tbp, Pdcd2, LOC636398, Prdm9, EG626573, LOC665017, LOC100041775
Downstream geneRgmb, LOC100041365, Eif3s6-ps3, LOC100041383, LOC100041394, LOC213781, LOC100041407, LOC665072
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-064O21.bB6Ng01-064O21.g
ACCDH884571DH884572
length9891,062
definitionDH884571|Mus musculus domesticus DNA, BAC clone: B6Ng01-064O21, 5' end.DH884572|Mus musculus domesticus DNA, BAC clone: B6Ng01-064O21, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(15,798,077 - 15,799,065)(15,847,095 - 15,848,167)
sequence
gaattctgtggtgaatccagctggccctagcctttttttttttagttgag
ggatctttaaattatttttttaaaagatttattttttttttaacttatat
gagtacaccgcagctgtcttcagacacactagaagagtgcattggattcc
attacagatggttgtgagccaccatgtggttgctgggaattgaactcagg
acctcttagaagagcagtcagtgctcttaatcactgcaccatctctccag
cctgagggatcttaaaattttaggtgcactgtgtgtctgtgtgcagtgct
ggaactggggttttgtgtggttgtgaaccaccatgtggctgctgggaatt
gaaacagagtccactgccagagcaacaactactcttaagtacttaaccat
ctctctgaccttgcatcaaatttcttcttaggatgccttgattgtgttcc
acagttttgggtatgttgtgttttttttttttttttctttttctttttct
tttttttttaatttatttattacatgtaagtatactgtagctgtcttcag
acacaccagaagagagcgtcagatctcattacagatggttgtgaaccacc
atgtggttgctgggatttgaactctagaccttcggaagagcagtcgggtg
ctcttacccactgagccatctcaccagcccatgttgtgtttttattttca
tttgattaaatgaaatttaattcttcttgatttctttcttgacccaatta
ttgtgtgttgcttaatttctgggtgcttgtgtacttctgtagtttctatt
tcttggtgatatccagttttattccatggggtcagatagaatgaaagatg
ttattcttaactttccattctttgggactagcttattgtcccatatgtga
cccatttcagaggcagcagcggaaatcagcaggggtattattgacccttg
gaaactggtcagactggcaaacagtagctgagctcaaaa
gaattcaattaagtacagactatgtgagactattaaagcatattaccaat
atctcccactatgtaagaactattcaagggcataacatatagttatgtgg
tggctctccacctcggggtctaatggccccttcacagggacccatcaggt
attctgcagaccagctatttactcagtgattcagagctaccagaattaca
gttatgaagtagaaacaaaaataattttatggctggggatcagcaaaagc
ataaggagctgtataaagtgactgaactcagcatttggaaggctgagaac
aaccgattgactaaggcgccacatttgtaagccttacatgacaaaattgc
taaaaattgaacctaacaagcatctatcaattatccaaaaaacaagcaaa
atatgattgcaagtttcaaatatttgcccttgaatccattactaggttaa
accattcttcgaaataccattaggatgaaaatctgcggggtagctcaggg
gtagaactactgaccacgtgaacccttcatgtgcaggaataggaaaagaa
tgagtgagcacaatcttttaaaatgtttaagcagagtctgaagaatctgc
acacaccaagtccacacaggtggcctgatggctggggcctcgaagcacag
tggtgagagagcctgtcagtgacagaaccctctgttcaaccgaaccgcat
acaggtatgtatgcgtattaaaaactgtatgcgtagtataaaagtgcatg
catagtattaaaaactaaagacttactctagaaacacaaacacataattt
gctttattttttaatttattttatttactgggttttgtccaacccgctat
cctgggacaccctctataggtagcaaggctggccttgaatccagagctct
gcctctgcttctgagtgctaggatcataagacatgggccatagaatatca
tcttcatacaactatctgatacgtttcctctactaactcctccagagctt
tccgcttacccaactcatgcccttctcagggtggaaaggaaggtgagaag
ggagggagggag
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr17_15798077_15799065
seq2: B6Ng01-064O21.b_47_1035

seq1  GAATTCTGTGGTGAATCCAGCTGGCCCTAGCCTTTTTTTTTTTAGTTGAG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTGTGGTGAATCCAGCTGGCCCTAGCCTTTTTTTTTTTAGTTGAG  50

seq1  GGATCTTTAAATTATTTTTTTAAAAGATTTATTTTTTTTTTAACTTATAT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGATCTTTAAATTATTTTTTTAAAAGATTTATTTTTTTTTTAACTTATAT  100

seq1  GAGTACACCGCAGCTGTCTTCAGACACACTAGAAGAGTGCATTGGATTCC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGTACACCGCAGCTGTCTTCAGACACACTAGAAGAGTGCATTGGATTCC  150

seq1  ATTACAGATGGTTGTGAGCCACCATGTGGTTGCTGGGAATTGAACTCAGG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTACAGATGGTTGTGAGCCACCATGTGGTTGCTGGGAATTGAACTCAGG  200

seq1  ACCTCTTAGAAGAGCAGTCAGTGCTCTTAATCACTGCACCATCTCTCCAG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCTCTTAGAAGAGCAGTCAGTGCTCTTAATCACTGCACCATCTCTCCAG  250

seq1  CCTGAGGGATCTTAAAATTTTAGGTGCACTGTGTGTCTGTGTGCAGTGCT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGAGGGATCTTAAAATTTTAGGTGCACTGTGTGTCTGTGTGCAGTGCT  300

seq1  GGAACTGGGGTTTTGTGTGGTTGTGAACCACCATGTGGCTGCTGGGAATT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAACTGGGGTTTTGTGTGGTTGTGAACCACCATGTGGCTGCTGGGAATT  350

seq1  GAAACAGAGTCCACTGCCAGAGCAACAACTACTCTTAAGTACTTAACCAT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAACAGAGTCCACTGCCAGAGCAACAACTACTCTTAAGTACTTAACCAT  400

seq1  CTCTCTGACCTTGCATCAAATTTCTTCTTAGGATGCCTTGATTGTGTTCC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTCTGACCTTGCATCAAATTTCTTCTTAGGATGCCTTGATTGTGTTCC  450

seq1  ACAGTTTTGGGTATGTTGTGTTTTTTTTTTTTTTTTCTTTTTCTTTTTCT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGTTTTGGGTATGTTGTGTTTTTTTTTTTTTTTTCTTTTTCTTTTTCT  500

seq1  TTTTTTTTTAATTTATTTATTACATGTAAGTATACTGTAGCTGTCTTCAG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTTTTTAATTTATTTATTACATGTAAGTATACTGTAGCTGTCTTCAG  550

seq1  ACACACCAGAAGAGAGCGTCAGATCTCATTACAGATGGTTGTGAACCACC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACACCAGAAGAGAGCGTCAGATCTCATTACAGATGGTTGTGAACCACC  600

seq1  ATGTGGTTGCTGGGATTTGAACTCTAGACCTTCGGAAGAGCAGTCGGGTG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTGGTTGCTGGGATTTGAACTCTAGACCTTCGGAAGAGCAGTCGGGTG  650

seq1  CTCTTACCCACTGAGCCATCTCACCAGCCCATGTTGTGTTTTTATTTTCA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTTACCCACTGAGCCATCTCACCAGCCCATGTTGTGTTTTTATTTTCA  700

seq1  TTTGATTAAATGAAATTTAATTCTTCTTGATTTCTTCCTTGACCCAATTA  750
      |||||||||||||||||||||||||||||||||||| |||||||||||||
seq2  TTTGATTAAATGAAATTTAATTCTTCTTGATTTCTTTCTTGACCCAATTA  750

seq1  TTGTGTGTTGCTTAATTTCTGGGTGCTTGTGTACTTTCTGTAGTTTCTAT  800
      |||||||||||||||||||||||||||||||||| |||||||||||||||
seq2  TTGTGTGTTGCTTAATTTCTGGGTGCTTGTGTAC-TTCTGTAGTTTCTAT  799

seq1  TTCTTGGTGATATCCAGTTTTATTCCATGGGGTCAGATAGAATGAAGGAT  850
      |||||||||||||||||||||||||||||||||||||||||||||| |||
seq2  TTCTTGGTGATATCCAGTTTTATTCCATGGGGTCAGATAGAATGAAAGAT  849

seq1  GTTA-TCTTAACTTTCCATTCTTTGAGACTAGCTTAATGTCCCATATGTG  899
      |||| |||||||||||||||||||| |||||||||| |||||||||||||
seq2  GTTATTCTTAACTTTCCATTCTTTGGGACTAGCTTATTGTCCCATATGTG  899

seq1  ACCCATTTCAGAGGCAGCAGCGGAGATCAGCAAGGGGTA-TATTGACCCT  948
      |||||||||||||||||||||||| |||||| ||||||| ||||||||||
seq2  ACCCATTTCAGAGGCAGCAGCGGAAATCAGC-AGGGGTATTATTGACCCT  948

seq1  TGGAAACTGTTCAGACAGGCAAACAGTAGCTGAGCTCAAAA  989
      ||||||||| |||||| ||||||||||||||||||||||||
seq2  TGGAAACTGGTCAGACTGGCAAACAGTAGCTGAGCTCAAAA  989

seq1: chr17_15847095_15848167
seq2: B6Ng01-064O21.g_66_1127 (reverse)

seq1  CTCCCTCCCTCCCTTCTCACCTTCCTTTCCACCCTGAGAGAGGGCATGGA  50
      ||||||||||||||||||||||||||||||||||||||| ||||||| ||
seq2  CTCCCTCCCTCCCTTCTCACCTTCCTTTCCACCCTGAGA-AGGGCAT-GA  48

seq1  GTTGGGTAAGCGGGAAAGCTCTGGGAGGAGTTAGTAGAGGGAAACGTATC  100
      ||||||||||| |||||||||| ||||||||||||||| |||||||||||
seq2  GTTGGGTAAGC-GGAAAGCTCT-GGAGGAGTTAGTAGA-GGAAACGTATC  95

seq1  AGATAGGTTGTATGAAGATGATATTTCTATGGCCCATGTCTTATGATCCT  150
      ||||| ||||||||||||||||| ||||||||||||||||||||||||||
seq2  AGATA-GTTGTATGAAGATGATA-TTCTATGGCCCATGTCTTATGATCCT  143

seq1  AGCACTCAAGAGGCAGAGGCAGAGCTCTGGATTCAAGGCCAGCCTTGCCT  200
      ||||||| ||| ||||||||||||||||||||||||||||||||||| ||
seq2  AGCACTC-AGAAGCAGAGGCAGAGCTCTGGATTCAAGGCCAGCCTTG-CT  191

seq1  ACCTATAGAGGGTGTCCCAGGATAGCGGGTTGGACAAAAACCCAGTAAAT  250
      ||||||||||||||||||||||||||||||||||| ||||||||||||||
seq2  ACCTATAGAGGGTGTCCCAGGATAGCGGGTTGGAC-AAAACCCAGTAAAT  240

seq1  AAAATAAATTAAAAAATAAAGCAAAATTATGTGTTTGTGTTTCTAGAGTA  300
      |||||||||||||||||||||| |||||||||||||||||||||||||||
seq2  AAAATAAATTAAAAAATAAAGC-AAATTATGTGTTTGTGTTTCTAGAGTA  289

seq1  AGTCTTTAGTTTTTAATACTATGCATGCACTTTTATACTACGCATACAGT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTCTTTAGTTTTTAATACTATGCATGCACTTTTATACTACGCATACAGT  339

seq1  TTTTAATACGCATACATACCTGTATGCGGTTCGGTTGAACAGAGGGTTCT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTAATACGCATACATACCTGTATGCGGTTCGGTTGAACAGAGGGTTCT  389

seq1  GTCACTGACAGGCTCTCTCACCACTGTGCTTCGAGGCCCCAGCCATCAGG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCACTGACAGGCTCTCTCACCACTGTGCTTCGAGGCCCCAGCCATCAGG  439

seq1  CCACCTGTGTGGACTTGGTGTGTGCAGATTCTTCAGACTCTGCTTAAACA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCACCTGTGTGGACTTGGTGTGTGCAGATTCTTCAGACTCTGCTTAAACA  489

seq1  TTTTAAAAGATTGTGCTCACTCATTCTTTTCCTATTCCTGCACATGAAGG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTAAAAGATTGTGCTCACTCATTCTTTTCCTATTCCTGCACATGAAGG  539

seq1  GTTCACGTGGTCAGTAGTTCTACCCCTGAGCTACCCCGCAGATTTTCATC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTCACGTGGTCAGTAGTTCTACCCCTGAGCTACCCCGCAGATTTTCATC  589

seq1  CTAATGGTATTTCGAAGAATGGTTTAACCTAGTAATGGATTCAAGGGCAA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAATGGTATTTCGAAGAATGGTTTAACCTAGTAATGGATTCAAGGGCAA  639

seq1  ATATTTGAAACTTGCAATCATATTTTGCTTGTTTTTTGGATAATTGATAG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATTTGAAACTTGCAATCATATTTTGCTTGTTTTTTGGATAATTGATAG  689

seq1  ATGCTTGTTAGGTTCAATTTTTAGCAATTTTGTCATGTAAGGCTTACAAA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGCTTGTTAGGTTCAATTTTTAGCAATTTTGTCATGTAAGGCTTACAAA  739

seq1  TGTGGCGCCTTAGTCAATCGGTTGTTCTCAGCCTTCCAAATGCTGAGTTC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGGCGCCTTAGTCAATCGGTTGTTCTCAGCCTTCCAAATGCTGAGTTC  789

seq1  AGTCACTTTATACAGCTCCTTATGCTTTTGCTGATCCCCAGCCATAAAAT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTCACTTTATACAGCTCCTTATGCTTTTGCTGATCCCCAGCCATAAAAT  839

seq1  TATTTTTGTTTCTACTTCATAACTGTAATTCTGGTAGCTCTGAATCACTG  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTTTTGTTTCTACTTCATAACTGTAATTCTGGTAGCTCTGAATCACTG  889

seq1  AGTAAATAGCTGGTCTGCAGAATACCTGATGGGTCCCTGTGAAGGGGCCA  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTAAATAGCTGGTCTGCAGAATACCTGATGGGTCCCTGTGAAGGGGCCA  939

seq1  TTAGACCCCGAGGTGGAGAGCCACCACATAACTATATGTTATGCCCTTGA  1000
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAGACCCCGAGGTGGAGAGCCACCACATAACTATATGTTATGCCCTTGA  989

seq1  ATAGTTCTTACATAGTGGGAGATATTGGTAATATGCTTTAATAGTCTCAC  1050
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAGTTCTTACATAGTGGGAGATATTGGTAATATGCTTTAATAGTCTCAC  1039

seq1  ATAGTCTGTACTTAATTGAATTC  1073
      |||||||||||||||||||||||
seq2  ATAGTCTGTACTTAATTGAATTC  1062