BAC Information

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BAC

Clone NameB6Ng01-065G15
Chromosome17 (Build37)5 (Build37)
Map Location 41,808,157 - 41,808,78479,357,611 - 79,357,744
singlet/doubletsingletsinglet
Overlap genenone
Upstream geneEG619517, Crisp2, Rhag, 9130008F23Rik, EG435528, Cenpq, Mut, Ldha-ps3, LOC627577
Downstream geneLOC627626, Opn5, Gpr115
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-065G15.bB6Ng01-065G15.g
ACCDH884896DH884897
length628910
definitionDH884896|Mus musculus domesticus DNA, BAC clone: B6Ng01-065G15, 5' end.DH884897|Mus musculus domesticus DNA, BAC clone: B6Ng01-065G15, 3' end.
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(41,808,157 - 41,808,784)(79,357,611 - 79,357,744)
sequence
gaattctactgttaaagtatccatgaaataaagtataagtgtttcttttt
atatctacgagatctatagtctcagcttattggatgtaagcacagctggt
ttgcaggcaggggagatggtttggtgaataaagtgcttaccacataagca
gatggaaggtagaacaatacccagaattgcataggtcagctagtcactca
aatgtagtatgctactgtaaacaataagaaactgtctcacaaaaagttga
atatgaagatcaatatctaaggtagttgtctgacctccacatgcaaaaca
taacatgtacattcatacacacacacacacacacacacacacacacaaac
cacacgcacatacatgcagagatgaaagagacagggagagagggagagag
ggagagagagagagagagagagagagagagagagagagagagagagattt
gttggtaccattctagaacgtatccactaacaagcctgataagggaaatg
aatatttaaaaaaaaccaaaaaacaaaaacaaaacaaacaaacaaacaaa
caaaactcacaaatttgagagagaccaaggagacatttattcttgttcac
ataatggcatgccagtgaaaagttacaa
gaattctgtgtatgatgtcgtttcaaggttaatattccttgaccacttat
aattgttatttatatttatgcatttatgttttatttttttgtttttagtg
ctctcctagatgttttaatttttaaaatttttaattagatattttcttca
tttacatttcaaatgctatcccaaaagtaacctataccctacccaccgac
ctgctccataacctacccactcctgcttcctggccctggcattccccttt
actggggcatataatcttcataagactaagggcctctccgcccaatgatg
gccaactagaccatcttctgctacatatgcaggtagagacacaagctctg
ggggtactggttagttcatattgttgttcctcctaaaggcttctgaaccc
cttcagctccttaggtactttctgcagcttctccattgggagctctgtgt
tccatccaatagctgactgtgagcatccacttctgtattttccaggcact
ggcagagcatcacaagagacagcaatatcagggtcctatcagcaaaatat
tgctggcatatgcaatagtgtctgagtttggtggctttttatgggatgga
tctccgggtggggcagtctctggatggtccttcctgccatatcagctcca
aactttgtctctataactccctccatggggtattttgttccccattccaa
ggagtaacaaagtatccatactttggtcttccttcttcttgagtttcata
tattttgaaaattctatcttgggtattctaagtttctgagctaatatcca
cttattgttgagtgcatatcatgtgagttatttgtgatggggtacctcac
tcagtatgatatgctccagatgcatccatttgcctaagatttcatgattc
aacattttta
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr17_41808157_41808784
seq2: B6Ng01-065G15.b_42_669

seq1  GAATTCTACTGTTAAAGTATCCATGAAATAAAGTATAAGTGTTTCTTTTT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTACTGTTAAAGTATCCATGAAATAAAGTATAAGTGTTTCTTTTT  50

seq1  ATATCTACGAGATCTATAGTCTCAGCTTATTGGATGTAAGCACAGCTGGT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATCTACGAGATCTATAGTCTCAGCTTATTGGATGTAAGCACAGCTGGT  100

seq1  TTGCAGGCAGGGGAGATGGTTTGGTGAATAAAGTGCTTACCACATAAGCA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGCAGGCAGGGGAGATGGTTTGGTGAATAAAGTGCTTACCACATAAGCA  150

seq1  GATGGAAGGTAGAACAATACCCAGAATTGCATAGGTCAGCTAGTCACTCA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATGGAAGGTAGAACAATACCCAGAATTGCATAGGTCAGCTAGTCACTCA  200

seq1  AATGTAGTATGCTACTGTAAACAATAAGAAACTGTCTCACAAAAAGTTGA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGTAGTATGCTACTGTAAACAATAAGAAACTGTCTCACAAAAAGTTGA  250

seq1  ATATGAAGATCAATATCTAAGGTAGTTGTCTGACCTCCACATGCAAAACA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATGAAGATCAATATCTAAGGTAGTTGTCTGACCTCCACATGCAAAACA  300

seq1  TAACATGTACATTCATACACACACACACACACACACACACACACACAAAC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAACATGTACATTCATACACACACACACACACACACACACACACACAAAC  350

seq1  CACACGCACATACATGCAGAGATGAAAGAGACAGGGAGAGAGGGAGAGAG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACACGCACATACATGCAGAGATGAAAGAGACAGGGAGAGAGGGAGAGAG  400

seq1  GGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGATTT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGATTT  450

seq1  GTTGGTACCATTCTAGAACGTATCCACTAACAAGCCTGATAAGGGAAATG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTGGTACCATTCTAGAACGTATCCACTAACAAGCCTGATAAGGGAAATG  500

seq1  AATATTTAAAAAAAACCAAAAAACAAAA--CAAACAAACAAACAAACAAA  548
      ||||||||||||||||||||||||||||   |||||||||||||||||||
seq2  AATATTTAAAAAAAACCAAAAAACAAAAACAAAACAAACAAACAAACAAA  550

seq1  CAAAAACTCACAAATTTGAGAGAGACCAAGGAGACATTTATTCTTGCTCA  598
      | |||||||||||||||||||||||||||||||||||||||||||| |||
seq2  C-AAAACTCACAAATTTGAGAGAGACCAAGGAGACATTTATTCTTGTTCA  599

seq1  CAATAATGGCATGCCAGTGAAAGGTTACAA  628
      | |||||||||||||||||||| |||||||
seq2  C-ATAATGGCATGCCAGTGAAAAGTTACAA  628

seq1: chr5_79357611_79357744
seq2: B6Ng01-065G15.g_196_330

seq1  TTTAATTAGATATTTTCTTTATATACATTTCAAATGCTATCCCAAAAGTT  50
      ||||||||||||||||||| || |||||||||||||||||||||||||| 
seq2  TTTAATTAGATATTTTCTTCATTTACATTTCAAATGCTATCCCAAAAGTA  50

seq1  CTCTATACCCT-CCCCCCGCCCTGCTCCCCTACCCACCCACTCCTGCTTC  99
        ||||||||| ||| ||| ||||||||   ||| |||||||||||||||
seq2  ACCTATACCCTACCCACCGACCTGCTCCATAACCTACCCACTCCTGCTTC  100

seq1  TTGGCCCTGGCATTCCCCTGTACTGGGGCATATAA  134
       |||||||||||||||||| |||||||||||||||
seq2  CTGGCCCTGGCATTCCCCTTTACTGGGGCATATAA  135