BAC Information

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BAC

Clone NameB6Ng01-065P09
Chromosome17 (Build37)
Map Location 31,166,705 - 31,207,513
singlet/doubletdoublet
Overlap geneAbcg1
Upstream geneZfand3, Btbd9, EG623169, Glo1, LOC666942, 1700097N02Rik, Dnahc8, Glp1r, Umodl1
Downstream geneTff3, Tff2, LOC100042904, Tff1, Tmprss3, Ubash3a, LOC100042906, Tsga2, EG667056, Slc37a1, Pde9a, Wdr4, 1500032D16Rik, Pknox1, Cbs, LOC623242, U2af1, Cryaa, Snf1lk, Hsf2bp, Rrp1b
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-065P09.bB6Ng01-065P09.g
ACCDH885283DH885284
length2501,021
definitionDH885283|Mus musculus domesticus DNA, BAC clone: B6Ng01-065P09, 5' end.DH885284|Mus musculus domesticus DNA, BAC clone: B6Ng01-065P09, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(31,207,264 - 31,207,513)(31,166,705 - 31,167,730)
sequence
ctgaaaggggcttatttaatggcagagtccactcatttttagccagcctg
taatgacaggccttgtgaaagggcggtggaaattaagagaaagcaaacct
taatttgagaagggtgttgggtgttcaatggccttttataacccagaagc
aagccaatacacataatctggcttggagctgatcaggctgcttaacgcct
tcctgttgttgttgttgttgttgttgttgttgttgttgttttggggggga

gaattcagctgtgtgcttggggtagtgtgagctggggccgagatcttatt
atgtcttccctgttgcgtgtagggttttgtttttttctttaaagatttat
ttatttattttatgtatatgagtacattgtagctgtacagatggttgtga
gccttcatgtagttgttgggaattgaatttataggacctctgctcgctct
ggtggcccctgctcgctccggtcaactctgatctctcaggcccaaagacg
caccagaagagggcatcagatctcattacaagtggttataagtgagtcac
catgtggttgctgggatttgaactcaggaccttcggaagagcagtcagtg
tttttacccactgagctgtcttgccagcccgcgtgtagtttttaaaacat
gctaccaccttgtccaggagctgttacattctggcccctccctggttccc
ttttgtcctgcctggcttggttgcaggatccatcgatcacaatcagcccc
aattcagcttccttttctaaccgcctttgctctggcttggctctgggatt
gactgcccccagccttgaccaggcatctcttcctcccaatttttgctcca
ggagtctactgctccttcagcccactcctgagacccttgctccgggaagg
gttgtattaccagacccacctgagatccttgaatcctcaaaaaaagaaca
cacacttggcttgtcactttacagcttgcctttcgtggcacattgctacg
tggagatacctcccgcctggaaaggcatgcccttatcaatttattatctc
tgtctctccttctgccctaagcttaatggcttgtccaaattagcccctgc
caaatatctttgacctcccgcccataggggaggcctcaggccttagctcc
caaaatcttacttgattgctgaatgcttctcatttaatacatggcagaaa
aaaagctcttctctcttccttgcatctccttttctcttgagacctggaaa
tcccatctgaccatctgccta
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr17_31207264_31207513
seq2: B6Ng01-065P09.b_53_302 (reverse)

seq1  TCCCCCCCAAAACAACAACAACAACAACAACAACAACAACAACAACAGGA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCCCCCCAAAACAACAACAACAACAACAACAACAACAACAACAACAGGA  50

seq1  AGGCGTTAAGCAGCCTGATCAGCTCCAAGCCAGATTATGTGTATTGGCTT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGCGTTAAGCAGCCTGATCAGCTCCAAGCCAGATTATGTGTATTGGCTT  100

seq1  GCTTCTGGGTTATAAAAGGCCATTGAACACCCAACACCCTTCTCAAATTA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTTCTGGGTTATAAAAGGCCATTGAACACCCAACACCCTTCTCAAATTA  150

seq1  AGGTTTGCTTTCTCTTAATTTCCACCGCCCTTTCACAAGGCCTGTCATTA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGTTTGCTTTCTCTTAATTTCCACCGCCCTTTCACAAGGCCTGTCATTA  200

seq1  CAGGCTGGCTAAAAATGAGTGGACTCTGCCATTAAATAAGCCCCTTTCAG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGCTGGCTAAAAATGAGTGGACTCTGCCATTAAATAAGCCCCTTTCAG  250

seq1: chr17_31166705_31167730
seq2: B6Ng01-065P09.g_68_1088

seq1  GAATTCAGCTGTGTGCTTGGGGTAGTGTGAGCTGGGGCCGAGATCTTATT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAGCTGTGTGCTTGGGGTAGTGTGAGCTGGGGCCGAGATCTTATT  50

seq1  ATGTCTTCCCTGTTGCGTGTAGGGTTTTGTTTTTTTCTTTAAAGATTTAT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTCTTCCCTGTTGCGTGTAGGGTTTTGTTTTTTTCTTTAAAGATTTAT  100

seq1  TTATTTATTTTATGTATATGAGTACATTGTAGCTGTACAGATGGTTGTGA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATTTATTTTATGTATATGAGTACATTGTAGCTGTACAGATGGTTGTGA  150

seq1  GCCTTCATGTAGTTGTTGGGAATTGAATTTATAGGACCTCTGCTCGCTCT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCTTCATGTAGTTGTTGGGAATTGAATTTATAGGACCTCTGCTCGCTCT  200

seq1  GGTGGCCCCTGCTCGCTCCGGTCAACTCTGATCTCTCAGGCCCAAAGACG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTGGCCCCTGCTCGCTCCGGTCAACTCTGATCTCTCAGGCCCAAAGACG  250

seq1  CACCAGAAGAGGGCATCAGATCTCATTACAAGTGGTTATAAGTGAGTCAC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACCAGAAGAGGGCATCAGATCTCATTACAAGTGGTTATAAGTGAGTCAC  300

seq1  CATGTGGTTGCTGGGATTTGAACTCAGGACCTTCGGAAGAGCAGTCAGTG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATGTGGTTGCTGGGATTTGAACTCAGGACCTTCGGAAGAGCAGTCAGTG  350

seq1  TTTTTACCCACTGAGCTGTCTTGCCAGCCCGCGTGTAGTTTTTAAAACAT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTACCCACTGAGCTGTCTTGCCAGCCCGCGTGTAGTTTTTAAAACAT  400

seq1  GCTACCACCTTGTCCAGGAGCTGTTACATTCTGGCCCCTCCCTGGTTCCC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTACCACCTTGTCCAGGAGCTGTTACATTCTGGCCCCTCCCTGGTTCCC  450

seq1  TTTTGTCCTGCCTGGCTTGGTTGCAGGATCCATCGATCACAATCAGCCCC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTGTCCTGCCTGGCTTGGTTGCAGGATCCATCGATCACAATCAGCCCC  500

seq1  AATTCAGCTTCCTTTTCTAACCGCCTTTGCTCTGGCTTGGCTCTGGGATT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTCAGCTTCCTTTTCTAACCGCCTTTGCTCTGGCTTGGCTCTGGGATT  550

seq1  GACTGCCCCCAGCCTTGACCAGGCATCTCTTCCTCCCAATTTTTGCTCCA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACTGCCCCCAGCCTTGACCAGGCATCTCTTCCTCCCAATTTTTGCTCCA  600

seq1  GGAGTCTACTGCTCCTTCAGCCCACTCCTGAGACCCTTGCTCCGGGAAGG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAGTCTACTGCTCCTTCAGCCCACTCCTGAGACCCTTGCTCCGGGAAGG  650

seq1  GTTGTATTACCAGACCCACCTGAGATCCTTGAATCCTCAAAAAAAGAACA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTGTATTACCAGACCCACCTGAGATCCTTGAATCCTCAAAAAAAGAACA  700

seq1  CACACTTGGCTTGTCACTTTACAGCTTGCCTTTCGTGGCACAATTGCTAC  750
      ||||||||||||||||||||||||||||||||||||||||| ||||||||
seq2  CACACTTGGCTTGTCACTTTACAGCTTGCCTTTCGTGGCAC-ATTGCTAC  749

seq1  GTGGAGATACCTCCCGCCTGGAAAGGCATGCCCTTATCAATTTATTATCT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGGAGATACCTCCCGCCTGGAAAGGCATGCCCTTATCAATTTATTATCT  799

seq1  CTGTCTCTCCTTCTGCCCTAAGCTTAATGGCTTGTCCAAATTAGCCCCTG  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTCTCTCCTTCTGCCCTAAGCTTAATGGCTTGTCCAAATTAGCCCCTG  849

seq1  CCAAATATCTTTGACCTCCCGCCCATAGGGGAGGCCTCAGGCCTTAGCTC  900
      ||||||||||||||||||||||||||||||||||||||||||||||||| 
seq2  CCAAATATCTTTGACCTCCCGCCCATAGGGGAGGCCTCAGGCCTTAGCT-  898

seq1  CCCAAAATCTTACATGATTGCTGAATGCTTCTCATTTTAAAACATGGCAG  950
      ||||||||||||| |||||||||||||||||||| ||||| |||||||||
seq2  CCCAAAATCTTACTTGATTGCTGAATGCTTCTCA-TTTAATACATGGCAG  947

seq1  AAAAAAGCCTCTCTCTCT-TTCCTTGCATCTCCTTTTTCTCTTGGAACCT  999
      ||||||  |||| ||||| |||||||||||||| ||||||||||  ||||
seq2  AAAAAAAGCTCT-TCTCTCTTCCTTGCATCTCC-TTTTCTCTTGAGACCT  995

seq1  GGAAATCCCATCTGTACCATCTGCCTA  1026
      |||||||||||||| ||||||||||||
seq2  GGAAATCCCATCTG-ACCATCTGCCTA  1021