BAC Information

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BAC

Clone NameB6Ng01-066F02
Chromosome17 (Build37)
Map Location 41,176,646 - 41,339,216
singlet/doubletdoublet
Overlap geneLdha-ps3
Upstream geneLOC634967, Pgk2, Crisp3, Crisp1, LOC668229, LOC100043756, EG433107, EG619517, Crisp2, Rhag, 9130008F23Rik, EG435528, Cenpq, Mut
Downstream geneLOC627577
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-066F02.bB6Ng01-066F02.g
ACCDH885527DH885528
length1,177947
definitionDH885527|Mus musculus domesticus DNA, BAC clone: B6Ng01-066F02, 5' end.DH885528|Mus musculus domesticus DNA, BAC clone: B6Ng01-066F02, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(41,338,012 - 41,339,216)(41,176,646 - 41,177,594)
sequence
gaattcctaattacaatttatcttttcactaatgcatgccagaaatcgtt
tagaaacaaataacacaaagtcaaaggaaaataaaaattaataaatattt
aattcatacatcagggatgaacacagttattcatcgtacagttttctctt
aataaactttctctatgtttatcacagtgcatgtgtcctttttcaaatcc
tttgtttgtagaaactagaaccctgaaaaatctctgtggggtactgtcca
aatccagttctacacctatgacagtgagtctcattcagagacagccttaa
cataattttcaacaaaattattagtaagtgctgaccaaacttcctctgaa
attttattacttaagtagggtatttctaggacttttgccaacctctgttc
ttcagaaacacaaggaagcatcattcagatgatctctttacttgtagaac
tgtattaatgatgtagggaactgctgggctacagaggtaggccttcagag
ccccctttctggaccttcatggaggaaagggaggaaatgcaggactacaa
gggatcaaacttcttcctgccacccttttattttattttttttataaagg
cattaatctattctatgcactaagggcagagtcctcctcacctaaaaata
tcccatcaggtcttatctcccatacctgtagccctaaagggtagattttc
aacacaagaattctaacattactatcataccaagaacatttgcataatgc
ttttatgataaaataatagatattctcttgatcaaatcaactgcaagttg
tgcaagggaataatgaagggtgccctgcatgcccaaaggcatgagtgctg
cttcactggtagacaggaacagttgtaagccttacttccagctgtctctt
cagcttcattctcctgctccatggtagcgccgatcacagaagtactgact
aggcaaggagagaattgtgtgtaccatgtgaaaatgccttcatgtttagt
gatgtacctgtagcagcaactctgagctgtcatacatcagtgaacacgct
tggatctctagggagtctaatagtgacgagctaactgaatcttctagacc
aaggagatgacgctgttaatcttggtaaccctgaacagactttcctattg
tgcaaatgcaactttgcagaagctgtt
gaattcctatcttggaaacaaagtgtcaaataatcatgccttagtggagt
acttcatgtctaaaccagaactgctatacaaataatgcgtctacaatatc
tatggcaaagatatctaggtgagacataaaaaataagggtgaagagtgtg
aataaataagtgcatctaataacttgatttattatagttatatgggactc
aaccttgagagagtcaaccttgaatataattgatctagtagttcaaaaac
gatattcttacctataaattgacttttaacattgagatttcatggaaaca
cataagcagaataggcaaatattggaaatgttggaaatgttacataaaat
tatgtaaaatgtaatcagatatatttgtttcatctgactgataatgcatg
tacccaactctttggaaagttgacccacttgccctttaactattattgcc
aaacaaccaagtgctcagaatgtcttgggaagcatttagatcattaacat
caggaaagaatatttcagagcttctgaggtctggattgttgtcatatatg
atttaaaatagatttgcgggctggtgagatggctcagtgggtaagagcac
ccgactgctcttccgaaggtctggagttcaaatcccagcaaccacatggt
ggctcacaaccatctgtaacaagatctgactccctcttctggagtgtctg
aagacagctacagtgtacttacatataataaataaataaatctttaaaaa
aaatagatttgcaatacatgaaatataaagaaaacattgaaccatagtcc
aaaagagacataaagaggaaggaagaatcaaaaaatatagagaagtctta
attacactaaagtatttaaaattttacccctcaagagaataagctgtatt
cttaagcttaagtctctttgaacttaaattatgtcatgtaactgtta
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr17_41338012_41339216
seq2: B6Ng01-066F02.b_45_1221 (reverse)

seq1  AACAGCTTTCTCTGCAAAGTTGCCATTTGGCACAAATAGAGAAGTCCTGC  50
      |||||||   |||||||||||| ||||| |||| |||||  |||| ||| 
seq2  AACAGCT---TCTGCAAAGTTG-CATTT-GCAC-AATAGGAAAGT-CTG-  42

seq1  TTCAGGGGTTACATAGATTAAAACAGCTGTTCATCTCCTGTGGGTCTAGA  100
      |||| |||||||  |||||  ||||||   ||||||||  | ||||||||
seq2  TTCA-GGGTTACCAAGATT--AACAGC--GTCATCTCC--TTGGTCTAGA  85

seq1  AGATTCAGTTTAGCTCGTCAACTATTAGACTTCCCCTAGGAGATTCCAAG  150
      |||||||| |||||||||| |||||||||||  ||||| |||| ||||||
seq2  AGATTCAG-TTAGCTCGTC-ACTATTAGACT--CCCTA-GAGA-TCCAAG  129

seq1  CGTGTTCACTGATGTATGACAGCCTTCAGAGGTTTGCTGCTACAGGTACA  200
      |||||||||||||||||||||||  ||||||  |||||||||||||||||
seq2  CGTGTTCACTGATGTATGACAGC--TCAGAG--TTGCTGCTACAGGTACA  175

seq1  TCACTAAACATGAAGGCATTTTTCACATGGTAACACACAATTCTTCTCCT  250
      |||||||||||||||||| |||||||||||| ||||||||||| ||||||
seq2  TCACTAAACATGAAGGCA-TTTTCACATGGT-ACACACAATTC-TCTCCT  222

seq1  TGCCTAGTCAGTACTTCTGTGATCGGCGCTACCATGGAGCAGGAGAATGA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCCTAGTCAGTACTTCTGTGATCGGCGCTACCATGGAGCAGGAGAATGA  272

seq1  AGCTGAAGAGACAGCTGGAAGTAAGGCTTACAACTGTTCCTGTCTACCAG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCTGAAGAGACAGCTGGAAGTAAGGCTTACAACTGTTCCTGTCTACCAG  322

seq1  TGAAGCAGCACTCATGCCTTTGGGCATGCAGGGCACCCTTCATTATTCCC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAAGCAGCACTCATGCCTTTGGGCATGCAGGGCACCCTTCATTATTCCC  372

seq1  TTGCACAACTTGCAGTTGATTTGATCAAGAGAATATCTATTATTTTATCA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGCACAACTTGCAGTTGATTTGATCAAGAGAATATCTATTATTTTATCA  422

seq1  TAAAAGCATTATGCAAATGTTCTTGGTATGATAGTAATGTTAGAATTCTT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAAAGCATTATGCAAATGTTCTTGGTATGATAGTAATGTTAGAATTCTT  472

seq1  GTGTTGAAAATCTACCCTTTAGGGCTACAGGTATGGGAGATAAGACCTGA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTTGAAAATCTACCCTTTAGGGCTACAGGTATGGGAGATAAGACCTGA  522

seq1  TGGGATATTTTTAGGTGAGGAGGACTCTGCCCTTAGTGCATAGAATAGAT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGGATATTTTTAGGTGAGGAGGACTCTGCCCTTAGTGCATAGAATAGAT  572

seq1  TAATGCCTTTATAAAAAAAATAAAATAAAAGGGTGGCAGGAAGAAGTTTG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATGCCTTTATAAAAAAAATAAAATAAAAGGGTGGCAGGAAGAAGTTTG  622

seq1  ATCCCTTGTAGTCCTGCATTTCCTCCCTTTCCTCCATGAAGGTCCAGAAA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCCCTTGTAGTCCTGCATTTCCTCCCTTTCCTCCATGAAGGTCCAGAAA  672

seq1  GGGGGCTCTGAAGGCCTACCTCTGTAGCCCAGCAGTTCCCTACATCATTA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGGGCTCTGAAGGCCTACCTCTGTAGCCCAGCAGTTCCCTACATCATTA  722

seq1  ATACAGTTCTACAAGTAAAGAGATCATCTGAATGATGCTTCCTTGTGTTT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATACAGTTCTACAAGTAAAGAGATCATCTGAATGATGCTTCCTTGTGTTT  772

seq1  CTGAAGAACAGAGGTTGGCAAAAGTCCTAGAAATACCCTACTTAAGTAAT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGAAGAACAGAGGTTGGCAAAAGTCCTAGAAATACCCTACTTAAGTAAT  822

seq1  AAAATTTCAGAGGAAGTTTGGTCAGCACTTACTAATAATTTTGTTGAAAA  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAATTTCAGAGGAAGTTTGGTCAGCACTTACTAATAATTTTGTTGAAAA  872

seq1  TTATGTTAAGGCTGTCTCTGAATGAGACTCACTGTCATAGGTGTAGAACT  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATGTTAAGGCTGTCTCTGAATGAGACTCACTGTCATAGGTGTAGAACT  922

seq1  GGATTTGGACAGTACCCCACAGAGATTTTTCAGGGTTCTAGTTTCTACAA  1000
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGATTTGGACAGTACCCCACAGAGATTTTTCAGGGTTCTAGTTTCTACAA  972

seq1  ACAAAGGATTTGAAAAAGGACACATGCACTGTGATAAACATAGAGAAAGT  1050
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAAAGGATTTGAAAAAGGACACATGCACTGTGATAAACATAGAGAAAGT  1022

seq1  TTATTAAGAGAAAACTGTACGATGAATAACTGTGTTCATCCCTGATGTAT  1100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATTAAGAGAAAACTGTACGATGAATAACTGTGTTCATCCCTGATGTAT  1072

seq1  GAATTAAATATTTATTAATTTTTATTTTCCTTTGACTTTGTGTTATTTGT  1150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTAAATATTTATTAATTTTTATTTTCCTTTGACTTTGTGTTATTTGT  1122

seq1  TTCTAAACGATTTCTGGCATGCATTAGTGAAAAGATAAATTGTAATTAGG  1200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTAAACGATTTCTGGCATGCATTAGTGAAAAGATAAATTGTAATTAGG  1172

seq1  AATTC  1205
      |||||
seq2  AATTC  1177

seq1: chr17_41176646_41177594
seq2: B6Ng01-066F02.g_68_1014

seq1  GAATTCCTATCTTGGAAACAAAGTGTCAAATAATCATGCCTTAGTGGAGT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCTATCTTGGAAACAAAGTGTCAAATAATCATGCCTTAGTGGAGT  50

seq1  ACTTCATGTCTAAACCAGAACTGCTATACAAATAATGCGTCTACAATATC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTCATGTCTAAACCAGAACTGCTATACAAATAATGCGTCTACAATATC  100

seq1  TATGGCAAAGATATCTAGGTGAGACATAAAAAATAAGGGTGAAGAGTGTG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATGGCAAAGATATCTAGGTGAGACATAAAAAATAAGGGTGAAGAGTGTG  150

seq1  AATAAATAAGTGCATCTAATAACTTGATTTATTATAGTTATATGGGACTC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATAAATAAGTGCATCTAATAACTTGATTTATTATAGTTATATGGGACTC  200

seq1  AACCTTGAGAGAGTCAACCTTGAATATAATTGATCTAGTAGTTCAAAAAC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACCTTGAGAGAGTCAACCTTGAATATAATTGATCTAGTAGTTCAAAAAC  250

seq1  GATATTCTTACCTATAAATTGACTTTTAACATTGAGATTTCATGGAAACA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATATTCTTACCTATAAATTGACTTTTAACATTGAGATTTCATGGAAACA  300

seq1  CATAAGCAGAATAGGCAAATATTGGAAATGTTGGAAATGTTACATAAAAT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATAAGCAGAATAGGCAAATATTGGAAATGTTGGAAATGTTACATAAAAT  350

seq1  TATGTAAAATGTAATCAGATATATTTGTTTCATCTGACTGATAATGCATG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATGTAAAATGTAATCAGATATATTTGTTTCATCTGACTGATAATGCATG  400

seq1  TACCCAACTCTTTGGAAAGTTGACCCACTTGCCCTTTAACTATTATTGCC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACCCAACTCTTTGGAAAGTTGACCCACTTGCCCTTTAACTATTATTGCC  450

seq1  AAACAACCAAGTGCTCAGAATGTCTTGGGAAGCATTTAGATCATTAACAT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACAACCAAGTGCTCAGAATGTCTTGGGAAGCATTTAGATCATTAACAT  500

seq1  CAGGAAAGAATATTTCAGAGCTTCTGAGGTCTGGATTGTTGTCATATATG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGAAAGAATATTTCAGAGCTTCTGAGGTCTGGATTGTTGTCATATATG  550

seq1  ATTTAAAATAGATTTGCGGGCTGGTGAGATGGCTCAGTGGGTAAGAGCAC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTAAAATAGATTTGCGGGCTGGTGAGATGGCTCAGTGGGTAAGAGCAC  600

seq1  CCGACTGCTCTTCCGAAGGTCTGGAGTTCAAATCCCAGCAACCACATGGT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCGACTGCTCTTCCGAAGGTCTGGAGTTCAAATCCCAGCAACCACATGGT  650

seq1  GGCTCACAACCATCTGTAACAAGATCTGACTCCCTCTTCTGGAGTGTCTG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCTCACAACCATCTGTAACAAGATCTGACTCCCTCTTCTGGAGTGTCTG  700

seq1  AAGACAGCTACAGTGTACTTACATATAATAAATAAATAAATCTTTAAAAA  750
      ||||||||||||||||||||||||||||||||||||||||||||| ||||
seq2  AAGACAGCTACAGTGTACTTACATATAATAAATAAATAAATCTTT-AAAA  749

seq1  AAAATAGATTTGCAATACATGAAATATAAAGAAAACATTGAACCATAGTC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAATAGATTTGCAATACATGAAATATAAAGAAAACATTGAACCATAGTC  799

seq1  CAAAAAGAGACATAAAGAGGAAGGAAGAATCAAAAAATAGTAGAGAAGTC  850
      | ||||||||||||||||||||||||||||||||||||| ||||||||||
seq2  C-AAAAGAGACATAAAGAGGAAGGAAGAATCAAAAAATA-TAGAGAAGTC  847

seq1  TTAATTACACT-AAGTATTTTAAAATTTTACCCCTCAGGAGAATAAGCTG  899
      ||||||||||| ||||| ||||||||||||||||||| ||||||||||||
seq2  TTAATTACACTAAAGTA-TTTAAAATTTTACCCCTCAAGAGAATAAGCTG  896

seq1  TATTCTTAAGCTTAAGTCTCATTG-ACTTAAACTATGTCATGTAACTGTT  948
      |||||||||||||||||||| ||| ||||||| |||||||||||||||||
seq2  TATTCTTAAGCTTAAGTCTCTTTGAACTTAAATTATGTCATGTAACTGTT  946

seq1  A  949
      |
seq2  A  947