BAC Information

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BAC

Clone NameB6Ng01-066N01
Chromosome17 (Build37)
Map Location 60,154,755 - 60,290,640
singlet/doubletdoublet
Overlap genenone
Upstream geneLOC100043537, LOC100043542
Downstream geneLOC100043549
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-066N01.bB6Ng01-066N01.g
ACCDH885887DH885888
length1,147502
definitionDH885887|Mus musculus domesticus DNA, BAC clone: B6Ng01-066N01, 5' end.DH885888|Mus musculus domesticus DNA, BAC clone: B6Ng01-066N01, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(60,154,755 - 60,155,923)(60,290,133 - 60,290,640)
sequence
gaattcttatttgggtgaggtctgtgtcacttaggaatgtgtactaaact
cctgcattactcacataaccattgcagaatcaagaatataagactaagct
ggtgctatatatatgtagcacaaagaatcataaatatagatagtaagaac
ttttctgtggatatttgataatctaacatagcaatatttatttattctgt
agagtatttacagtacaccatgctggaaaatgatttgcatttttatcatt
atatcattctttcaggtatcaatgtaaaataaataaaaatcacaataaaa
tatgtaagagattgattcctagtgttatgcccaagtcaaacggacagcag
agaccactgaggagccaattctaaggcaaacacacagggtctttttttat
gaactcactagcaagttgtctcagagtctcacctgagggtcagagggtca
gagtgtgagccctgagtctaggggtgcagggttttttttattgtggttac
agcaagcttggggaacttctgtacaggtcagcaaggtaatattttaaaaa
ctgcatttctggaggaaccaaacaggagggcaggaaccacctgacaaaca
ggatgatcacgttatctttctctgcaagatgtcttaggttatttatatgt
acctaggtcctattattatagcctggctgttgctaaaagagaagcaggtg
gggcaaaggatgtttggtcaggtgaactttgtgattttttttttcctgga
attggagtttaaactctagtctcccacaaaatggagtttcttcaaaaatg
gagttggttgggttttacacttaaagggtgtatgcaaatacaataatgga
atagttcatttcattaacttgtgaaacttgatattgatgaagtttttcac
aaaacataatcaataaagaaatttcctaaccatcaccctgacttgcagac
aagctaatctacattactgcctacaggaaggctacatttaaattgccctg
ttatcattctgataccccccccatcacggtcctgatgtaataggttaaaa
ctgttggaaatattccaaaaggggaaagaaaaagaaaggatgtgttgggt
gaccataacgggaagcatgaaaagagaaccctggagaacagaaaaga
actgctcatagcaaagaaaaagtaaaacaagataatatatagaaaaaaca
ttgttttcagaccttgaaaagtaggcactgaagcactgtttcctctgagg
aaaaaacagctgaaattctacaatgaacccagctatcttgctggaggcat
attaggaattttgattagtaaagaaaaaacaataacagaacagggcagac
cttatgtgctcatgcaggtcaaaggaactgatgtgtgagaagctcagcac
aggacaggagcgagtacaccaaacagtaagtcaaagaaatctaaaatgga
aaaaaagaaaaagcaggaaaaaaaaaaaaactttgaacagaaacatatcc
tatcaaatctgggcaatgaattactgggaactgagttgctatagctatgt
ccccattttctctcttcaactccaatgtgtaagagcataggttccagcgt
gacaccttaaagaagtgttgggaaggaatagtgagatgggggaatatgga
tt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr17_60154755_60155923
seq2: B6Ng01-066N01.b_47_1193

seq1  GAATTCTTATTTGGGTGAGGTCTGTGTCACTTAGGAATGTGTACTAAACT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTTATTTGGGTGAGGTCTGTGTCACTTAGGAATGTGTACTAAACT  50

seq1  CCTGCATTACTCACATAACCATTGCAGAATCAAGAATATAAGACTAAGCT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGCATTACTCACATAACCATTGCAGAATCAAGAATATAAGACTAAGCT  100

seq1  GGTGCTATATATATGTAGCACAAAGAATCATAAATATAGATAGTAAGAAC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTGCTATATATATGTAGCACAAAGAATCATAAATATAGATAGTAAGAAC  150

seq1  TTTTCTGTGGATATTTGATAATCTAACATAGCAATATTTATTTATTCTGT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTCTGTGGATATTTGATAATCTAACATAGCAATATTTATTTATTCTGT  200

seq1  AGAGTATTTACAGTACACCATGCTGGAAAATGATTTGCATTTTTATCATT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGTATTTACAGTACACCATGCTGGAAAATGATTTGCATTTTTATCATT  250

seq1  ATATCATTCTTTCAGGTATCAATGTAAAATAAATAAAAATCACAATAAAA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATCATTCTTTCAGGTATCAATGTAAAATAAATAAAAATCACAATAAAA  300

seq1  TATGTAAGAGATTGATTCCTAGTGTTATGCCCAAGTCAAACGGACAGCAG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATGTAAGAGATTGATTCCTAGTGTTATGCCCAAGTCAAACGGACAGCAG  350

seq1  AGACCACTGAGGAGCCAATTCTAAGGCAAACACACAGGGTCTTTTTTTAT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGACCACTGAGGAGCCAATTCTAAGGCAAACACACAGGGTCTTTTTTTAT  400

seq1  GAACTCACTAGCAAGTTGTCTCAGAGTCTCACCTGAGGGTCAGAGGGTCA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAACTCACTAGCAAGTTGTCTCAGAGTCTCACCTGAGGGTCAGAGGGTCA  450

seq1  GAGTGTGAGCCCTGAGTCTAGGGGTGCAGGGTTTTTTTTATTGTGGTTAC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGTGTGAGCCCTGAGTCTAGGGGTGCAGGGTTTTTTTTATTGTGGTTAC  500

seq1  AGCAAGCTTGGGGAACTTCTGTACAGGTCAGCAAGGTAATATTTTAAAAA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCAAGCTTGGGGAACTTCTGTACAGGTCAGCAAGGTAATATTTTAAAAA  550

seq1  CTGCATTTCTGGAGGAACCAAACAGGAGGGCAGGAACCACCTGACAAACA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGCATTTCTGGAGGAACCAAACAGGAGGGCAGGAACCACCTGACAAACA  600

seq1  GGATGATCACGTTATCTTTCTCTGCAAGATGTCTTAGGTTATTTATATGT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGATGATCACGTTATCTTTCTCTGCAAGATGTCTTAGGTTATTTATATGT  650

seq1  ACCTAGGTCCTATTATTATAGCCTGGCTGTTGCTAAAAGAGAAGCAGGTG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCTAGGTCCTATTATTATAGCCTGGCTGTTGCTAAAAGAGAAGCAGGTG  700

seq1  GGGCAAAGGATGTTTGGTCAGGTGAACTTTGTGATTTTTTTTTTCCTGGA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGCAAAGGATGTTTGGTCAGGTGAACTTTGTGATTTTTTTTTTCCTGGA  750

seq1  ATTGGAGTTTAAACTCTAGTCTCCCACAAAATGGAGTTTCTTCAAAAATG  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTGGAGTTTAAACTCTAGTCTCCCACAAAATGGAGTTTCTTCAAAAATG  800

seq1  GAGTTGGTTGGGTTTTACACTTAAAGGGTGTATGCAAATACAATAATGGA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGTTGGTTGGGTTTTACACTTAAAGGGTGTATGCAAATACAATAATGGA  850

seq1  ATAGTTCATTTCATTAACTTGTGAAACTTGAATATTGATGAAGTTTTTCA  900
      |||||||||||||||||||||||||||||| |||||||||||||||||||
seq2  ATAGTTCATTTCATTAACTTGTGAAACTTG-ATATTGATGAAGTTTTTCA  899

seq1  CAAAACATAATCAATAAAAGAAATTTCCTAACCATCCACCCTGACCTTGC  950
      ||||||||||||||| ||||||||||||||||||| |||||||| |||||
seq2  CAAAACATAATCAAT-AAAGAAATTTCCTAACCAT-CACCCTGA-CTTGC  946

seq1  AGACAAGCTAATCTACATTACTGCCTACAGGAAGGCTACATTTAAATTGC  1000
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGACAAGCTAATCTACATTACTGCCTACAGGAAGGCTACATTTAAATTGC  996

seq1  CCTGTTATCATTCTGATAACCCCCCCCCCATCACCGTCCTAGATGTAATA  1050
      ||||||||||||||||||   ||||||||||||| ||||| |||||||||
seq2  CCTGTTATCATTCTGATA---CCCCCCCCATCACGGTCCT-GATGTAATA  1042

seq1  GGTTAAAAACTGTTGGAAATAATTCCAAAAAGGGGAAAAGACAAAGAAAG  1100
      |||| ||||||||||||||| |||||||||  ||| ||||| ||||||||
seq2  GGTT-AAAACTGTTGGAAAT-ATTCCAAAA--GGGGAAAGAAAAAGAAAG  1088

seq1  AGAGTGTTGTGGAGGAACCATAACAGGAAAGCAGGAGAAAGAGAAACCAC  1150
         |||||| || |  |||||||| || ||||| || ||||||||  | |
seq2  GATGTGTTG-GGTG--ACCATAAC-GGGAAGCATGA-AAAGAGAA--CCC  1131

seq1  TGGAAGGAAACAGAAAAGA  1169
      ||||    |||||||||||
seq2  TGGA---GAACAGAAAAGA  1147

seq1: chr17_60290133_60290640
seq2: B6Ng01-066N01.g_68_575 (reverse)

seq1  AATCCATATTCCCCCATCTCACTATTCCTTCCCAACACTTCTTTAAGGTG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATCCATATTCCCCCATCTCACTATTCCTTCCCAACACTTCTTTAAGGTG  50

seq1  TCACGCTGGAACCTATGCTCTTACACATTGGAGTTGAAGAGAGAAAATGG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCACGCTGGAACCTATGCTCTTACACATTGGAGTTGAAGAGAGAAAATGG  100

seq1  GGACATAGCTATAGCAACTCAGTTCCCAGTAATTCATTGCCCAGATTTGA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGACATAGCTATAGCAACTCAGTTCCCAGTAATTCATTGCCCAGATTTGA  150

seq1  TAGGATATGTTTCTGTTCAAAGTTTTTTTTTTTTTCCTGCTTTTTCTTTT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGGATATGTTTCTGTTCAAAGTTTTTTTTTTTTTCCTGCTTTTTCTTTT  200

seq1  TTTCCATTTTAGATTTCTTTGACTTACTGTTTGGTGTACTCGCTCCTGTC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCCATTTTAGATTTCTTTGACTTACTGTTTGGTGTACTCGCTCCTGTC  250

seq1  CTGTGCTGAGCTTCTCACACATCAGTTCCTTTGACCTGCATGAGCACATA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTGCTGAGCTTCTCACACATCAGTTCCTTTGACCTGCATGAGCACATA  300

seq1  AGGTCTGCCCTGTTCTGTTATTGTTTTTTCTTTACTAATCAAAATTCCTA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGTCTGCCCTGTTCTGTTATTGTTTTTTCTTTACTAATCAAAATTCCTA  350

seq1  ATATGCCTCCAGCAAGATAGCTGGGTTCATTGTAGAATTTCAGCTGTTTT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATGCCTCCAGCAAGATAGCTGGGTTCATTGTAGAATTTCAGCTGTTTT  400

seq1  TTCCTCAGAGGAAACAGTGCTTCAGTGCCTACTTTTCAAGGTCTGAAAAC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCTCAGAGGAAACAGTGCTTCAGTGCCTACTTTTCAAGGTCTGAAAAC  450

seq1  AATGTTTTTTCTATATATTATCTTGTTTTACTTTTTCTTTGCTATGAGCA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGTTTTTTCTATATATTATCTTGTTTTACTTTTTCTTTGCTATGAGCA  500

seq1  GTGAATTC  508
      ||||||||
seq2  GTGAATTC  508