BAC Information

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BAC

Clone NameB6Ng01-066N02
Chromosome17 (Build37)
Map Location 16,444,696 - 16,610,881
singlet/doubletdoublet
Overlap geneLOC100041383
Upstream geneLOC664953, Dll1, LOC100041314, 4932442K08Rik, Psmb1, Tbp, Pdcd2, LOC636398, Prdm9, EG626573, LOC665017, LOC100041775, 5830433I10Rik, Chd1, Rgmb, LOC100041365, Eif3s6-ps3
Downstream geneLOC100041394, LOC213781, LOC100041407, LOC665072, EG383211, LOC626785, LOC665085, BC002059, BC018101, Zfp97, EG382161, LOC676238, EG626854, LOC100041965, Riok2, Lix1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-066N02.bB6Ng01-066N02.g
ACCDH885889DH885890
length1,0411,124
definitionDH885889|Mus musculus domesticus DNA, BAC clone: B6Ng01-066N02, 5' end.DH885890|Mus musculus domesticus DNA, BAC clone: B6Ng01-066N02, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(16,609,835 - 16,610,881)(16,444,696 - 16,445,731)
sequence
gaattctcactcacagtacaaacttataatggaatgctaccagtatttga
tcttatagtttttctagcaagggacacaattttgaaatctgaggagaaaa
atgagcattattaaagattccagacttgattaatatgaatttacaaggcc
ttttggcacatactgttgttaggtccaggacgtaggcaattaagagagga
caagtactctggtcttgaatgccagacatggagacttaagaaggaaacat
atgtgacataagcatacatacacaagacattcttcttgcatcatggctcc
caataacatctaagactaaatatacagattagtgggaggagtaggatgca
taatgaatggtatctttagtacatgctttaaagcaacttctgtgtctact
ttctggttttggactgaattcttcaattttcactaatgctgctattttca
acctttgctctttaccacctccatctagtaagaaggattaaatatatttg
cctttttttctccacactacagaatgctgtcagaaaagaatacatggtaa
atataaaatgaatgtgtagaaaacactattaactgcagccactgtgctgc
agatctgagactcattcatcttgcatatctgaaactacttgtcctttgtt
cctctgtgctcatatgaattttaagattgttttcttatctctgaaaaaaa
atgttattggaaatttgatagggattggcagagcttaacttaataggata
caattctccctccactatctagttattaaattttgaggttccctttccct
tctagaagagctcagggtttcacagggtagatgatggcatcacatctaat
ggagagtattggacagaggctgtgggcagatagatgccagcagattgatg
tagctgaatagatcttctaagataacatttaaccttatacctagtaagtg
attatgcatgtatagtattatgttttcctgtatggcagttgtataatgaa
taatataacatgggcaatccaaggtatatttttccatatgg
gaattcatatgtgcataagtcctgttatgtcggaaagatactgtttcctt
gaagtcatctaccactttcttttctgtactaattcctgagccctgaaaag
agagggttgataaagacattccatttcacctgatgccttagttagaattt
tcaatgctatgaagagacaccatgagcaggtcaactcttgtaaggacagt
atttaattggggctggcttacactatcagtggttcagtccattatcatgg
aggaaagcaaggcagcatccaagtagccatggcattggaggagataagag
tttacatcttaatctgtcctccaggcccataggaggagggtctcaaagtc
tacccctacaatgacacaattggttcaataaggccacacttactccaatg
aggccacacctcctaatagtgccacttcttgggccaaacatattcaaacc
accacagctgagtattccaaagtttctgcatttgatatacaaataacaaa
cacactgagaaagaaatcatgtaaacaaaacctttcacaatagcttcaaa
aaatgaatattaggataactctaagcaagtgaaagacttttatatgtatt
tagaatttttctttgtgtgtgtgtgtataaaacaacaccctgaatttgaa
ggagagcaaggggtgacactggttatataaatcacactctaggaaggaag
gtacatgggatggtttggaaagagtgaaaggaaaatgatataattataag
tttaaaaattatatgaaagtacaaataatatatatttcaaaaggcaggca
tctttgaaatgctaattaggacatacatgttaatgtaccaggcaagattc
ttcactgaataattcaaaagaaaataatagacattgtcttttcacttatg
agtcatggtcacagaattttcatggaaacaagcctggggaacttagacta
tagaaatttccttgattatctaacatatggatttattctgaagctaaaac
tctgtaagtgctggcagattatacattgagaaacttaatgaacaatcttg
aacatgggatagtaataaaacttgtttggaaattaatcttggggacttcc
gcatggtttgtatttttcaatatt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr17_16609835_16610881
seq2: B6Ng01-066N02.b_49_1089 (reverse)

seq1  CCATATGGAAAAATATAACCTTGGATTGCCCATGTTATATTATTCATTAT  50
      |||||||||||||||| |||||||||||||||||||||||||||||||||
seq2  CCATATGGAAAAATAT-ACCTTGGATTGCCCATGTTATATTATTCATTAT  49

seq1  AACAACTGCCATACAGGAAAACATAAATGACTATACATGCATAAATCACT  100
       |||||||||||||||||||||||||   ||||||||||||| |||||||
seq2  -ACAACTGCCATACAGGAAAACATAA--TACTATACATGCAT-AATCACT  95

seq1  TACTAGGTAATAAGGTAAAATGTTATCTTAGAAGATCTATTCAGCTACAT  150
      |||||||| ||||||| |||||||||||||||||||||||||||||||||
seq2  TACTAGGT-ATAAGGTTAAATGTTATCTTAGAAGATCTATTCAGCTACAT  144

seq1  CAATCTGCTGGCATCTATCTGCCCACAGCCTCTGTCCAATACTCTCCATT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAATCTGCTGGCATCTATCTGCCCACAGCCTCTGTCCAATACTCTCCATT  194

seq1  AGATGTGATGCCATCATCTACCCTGTGAAACCCTGAGCTCTTCTAGAAGG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATGTGATGCCATCATCTACCCTGTGAAACCCTGAGCTCTTCTAGAAGG  244

seq1  GAAAGGGAACCTCAAAATTTAATAACTAGATAGTGGAGGGAGAATTGTAT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAAGGGAACCTCAAAATTTAATAACTAGATAGTGGAGGGAGAATTGTAT  294

seq1  CCTATTAAGTTAAGCTCTGCCAATCCCTATCAAATTTCCAATAACATTTT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTATTAAGTTAAGCTCTGCCAATCCCTATCAAATTTCCAATAACATTTT  344

seq1  TTTTCAGAGATAAGAAAACAATCTTAAAATTCATATGAGCACAGAGGAAC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTCAGAGATAAGAAAACAATCTTAAAATTCATATGAGCACAGAGGAAC  394

seq1  AAAGGACAAGTAGTTTCAGATATGCAAGATGAATGAGTCTCAGATCTGCA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGGACAAGTAGTTTCAGATATGCAAGATGAATGAGTCTCAGATCTGCA  444

seq1  GCACAGTGGCTGCAGTTAATAGTGTTTTCTACACATTCATTTTATATTTA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCACAGTGGCTGCAGTTAATAGTGTTTTCTACACATTCATTTTATATTTA  494

seq1  CCATGTATTCTTTTCTGACAGCATTCTGTAGTGTGGAGAAAAAAAGGCAA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCATGTATTCTTTTCTGACAGCATTCTGTAGTGTGGAGAAAAAAAGGCAA  544

seq1  ATATATTTAATCCTTCTTACTAGATGGAGGTGGTAAAGAGCAAAGGTTGA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATATTTAATCCTTCTTACTAGATGGAGGTGGTAAAGAGCAAAGGTTGA  594

seq1  AAATAGCAGCATTAGTGAAAATTGAAGAATTCAGTCCAAAACCAGAAAGT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATAGCAGCATTAGTGAAAATTGAAGAATTCAGTCCAAAACCAGAAAGT  644

seq1  AGACACAGAAGTTGCTTTAAAGCATGTACTAAAGATACCATTCATTATGC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGACACAGAAGTTGCTTTAAAGCATGTACTAAAGATACCATTCATTATGC  694

seq1  ATCCTACTCCTCCCACTAATCTGTATATTTAGTCTTAGATGTTATTGGGA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCCTACTCCTCCCACTAATCTGTATATTTAGTCTTAGATGTTATTGGGA  744

seq1  GCCATGATGCAAGAAGAATGTCTTGTGTATGTATGCTTATGTCACATATG  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCATGATGCAAGAAGAATGTCTTGTGTATGTATGCTTATGTCACATATG  794

seq1  TTTCCTTCTTAAGTCTCCATGTCTGGCATTCAAGACCAGAGTACTTGTCC  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCCTTCTTAAGTCTCCATGTCTGGCATTCAAGACCAGAGTACTTGTCC  844

seq1  TCTCTTAATTGCCTACGTCCTGGACCTAACAACAGTATGTGCCAAAAGGC  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCTTAATTGCCTACGTCCTGGACCTAACAACAGTATGTGCCAAAAGGC  894

seq1  CTTGTAAATTCATATTAATCAAGTCTGGAATCTTTAATAATGCTCATTTT  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTGTAAATTCATATTAATCAAGTCTGGAATCTTTAATAATGCTCATTTT  944

seq1  TCTCCTCAGATTTCAAAATTGTGTCCCTTGCTAGAAAAACTATAAGATCA  1000
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCCTCAGATTTCAAAATTGTGTCCCTTGCTAGAAAAACTATAAGATCA  994

seq1  AATACTGGTAGCATTCCATTATAAGTTTGTACTGTGAGTGAGAATTC  1047
      |||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATACTGGTAGCATTCCATTATAAGTTTGTACTGTGAGTGAGAATTC  1041

seq1: chr17_16444696_16445731
seq2: B6Ng01-066N02.g_161_1191

seq1  TGAAAAGAGAGGGTTGATAAAGACATTCCATTTCACCTGATGCCTTAGTT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAAAAGAGAGGGTTGATAAAGACATTCCATTTCACCTGATGCCTTAGTT  50

seq1  AGAATTTTCAATGCTATGAAGAGACACCATGAGCAGGTCAACTCTTGTAA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAATTTTCAATGCTATGAAGAGACACCATGAGCAGGTCAACTCTTGTAA  100

seq1  GGACAGTATTTAATTGGGGCTGGCTTACACTATCAGTGGTTCAGTCCATT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGACAGTATTTAATTGGGGCTGGCTTACACTATCAGTGGTTCAGTCCATT  150

seq1  ATCATGGAGGAAAGCAAGGCAGCATCCAAGTAGCCATGGCATTGGAGGAG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCATGGAGGAAAGCAAGGCAGCATCCAAGTAGCCATGGCATTGGAGGAG  200

seq1  ATAAGAGTTTACATCTTAATCTGTCCTCCAGGCCCATAGGAGGAGGGTCT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAAGAGTTTACATCTTAATCTGTCCTCCAGGCCCATAGGAGGAGGGTCT  250

seq1  CAAAGTCTACCCCTACAATGACACAATTGGTTCAATAAGGCCACACTTAC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAAGTCTACCCCTACAATGACACAATTGGTTCAATAAGGCCACACTTAC  300

seq1  TCCAATGAGGCCACACCTCCTAATAGTGCCACTTCTTGGGCCAAACATAT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCAATGAGGCCACACCTCCTAATAGTGCCACTTCTTGGGCCAAACATAT  350

seq1  TCAAACCACCACAGCTGAGTATTCCAAAGTTTCTGCATTTGATATACAAA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAAACCACCACAGCTGAGTATTCCAAAGTTTCTGCATTTGATATACAAA  400

seq1  TAACAAACACACTGAGAAAGAAATCATGTAAACAAAACCTTTCACAATAG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAACAAACACACTGAGAAAGAAATCATGTAAACAAAACCTTTCACAATAG  450

seq1  CTTCAAAAAATGAATATTAGGATAACTCTAAGCAAGTGAAAGACTTTTAT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCAAAAAATGAATATTAGGATAACTCTAAGCAAGTGAAAGACTTTTAT  500

seq1  ATGTATTTAGAATTTTTCTTTGTGTGTGTGTGTATAAAACAACACCCTGA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTATTTAGAATTTTTCTTTGTGTGTGTGTGTATAAAACAACACCCTGA  550

seq1  ATTTGAAGGAGAGCAAGGGGTGACACTGGTTATATAAATCACACTCTAGG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTGAAGGAGAGCAAGGGGTGACACTGGTTATATAAATCACACTCTAGG  600

seq1  AAGGAAGGTACATGGGATGGTTTGGAAAGAGTGAAAGGAAAATGATATAA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGAAGGTACATGGGATGGTTTGGAAAGAGTGAAAGGAAAATGATATAA  650

seq1  TTATAAGTTTAAAAATTATATGAAAGTACAAATAATATATA-TTCAAAAG  699
      ||||||||||||||||||||||||||||||||||||||||| ||||||||
seq2  TTATAAGTTTAAAAATTATATGAAAGTACAAATAATATATATTTCAAAAG  700

seq1  GCAGGCATC-TTGAAATGCTAATTAGGACATACATGTTAATGTACCAGGC  748
      ||||||||| ||||||||||||||||||||||||||||||||||||||||
seq2  GCAGGCATCTTTGAAATGCTAATTAGGACATACATGTTAATGTACCAGGC  750

seq1  AAGATTCTTCACTGAATAATTCAAAAG-AAATAATAGACATTGTCTTTTC  797
      ||||||||||||||||||||||||||| ||||||||||||||||||||||
seq2  AAGATTCTTCACTGAATAATTCAAAAGAAAATAATAGACATTGTCTTTTC  800

seq1  ACTTATGAGTCATGGTCACAGAA-TTTCATGGAAACAAGCCT-GGGAACT  845
      ||||||||||||||||||||||| |||||||||||||||||| |||||||
seq2  ACTTATGAGTCATGGTCACAGAATTTTCATGGAAACAAGCCTGGGGAACT  850

seq1  TAGACTATAGAAATTTCCTTGATTATCTAACATATGGATTTTATTCTGTA  895
      |||||||||||||||||||||||||||||||||||||| ||||||||| |
seq2  TAGACTATAGAAATTTCCTTGATTATCTAACATATGGA-TTTATTCTGAA  899

seq1  GCTAAAAACTCTGTAAGTGCTGGGCAAGATATACAAATGAGACACTTTAT  945
      ||| ||||||||||||||||| ||||   ||||| | ||||| || ||| 
seq2  GCT-AAAACTCTGTAAGTGCT-GGCAGATTATAC-ATTGAGAAAC-TTAA  945

seq1  TGAACATACTTGAACATGGGATAAGTGAGTAAAACCATGTTTTGGAAATT  995
      ||||||  |||||||||||||| ||| | ||||||  |  ||||||||||
seq2  TGAACAATCTTGAACATGGGAT-AGT-AATAAAAC--TTGTTTGGAAATT  991

seq1  AATC-TGGGGACTTCCACGATAGTTTGTATTTTTCAAATATT  1036
      |||| ||||||||||| | || ||||||||||||| ||||||
seq2  AATCTTGGGGACTTCCGC-ATGGTTTGTATTTTTC-AATATT  1031