BAC Information

Click to search

BAC

Clone NameB6Ng01-066N17
Chromosome17 (Build37)
Map Location 52,350,024 - 52,490,491
singlet/doubletdoublet
Overlap geneLOC672987
Upstream geneLOC100043451, LOC100043452, Satb1, EG628919
Downstream geneEG328839, Kcnh8, LOC668506
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-066N17.bB6Ng01-066N17.g
ACCDH885915DH885916
length839426
definitionDH885915|Mus musculus domesticus DNA, BAC clone: B6Ng01-066N17, 5' end.DH885916|Mus musculus domesticus DNA, BAC clone: B6Ng01-066N17, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(52,489,654 - 52,490,491)(52,350,024 - 52,350,455)
sequence
gaattctaacacatagaaagtaccccactctgcatgcttttttacttttc
aatgtacccttggagactgaaataataatttgatattctctgtctgctgg
tgctagatgggcttttcctttaatgatgcaatgcttccagtggccagaaa
gtctcaggacattgacagaagaatctgttggagctttgctccttcacatt
ggtttgctggtgagcaccatctctgactgtttccattcaacaagctctct
gacactacaagaagctctctcttcatctggtagaataacagtgaacttgg
gtctgcttcctgcccacctttcttgctatctctggaactgccttcagatt
tagacagtttgaatattaccagctcctaggaaccatttgacaggaatgct
aaggttctcagaaaagagttagttgtcaaaggctttctctagtcacatga
ctgggttgataagtttaaatgtagccaagtgtttctcaagtgtatttgga
atattttaggatattcaatctctctctgtctctctgtctctctctctctc
tctgtctctgtctctctctctgtctctgtctctctgtctctgtctctctg
tctctctgtctctctgcctctctctgtctctctctctttctctgtctccc
tgtctttgtctctctctttctctctctctgtctctctgtgtgtgtgtgtg
tgtgtgtgtgtgtgtgtatgtcctctttttctcacagtttgagaattggt
cttggaaaaactctctacaaattttttttggtttttgttttgtattcgtt
gatgtagattttgtttggtttgtttgttgtttgtttatt
agagccatctgggcaacttattctttctcaaaataaaatgtgcaaaggaa
tctgggagattttggagaactggaacaaaatactgtctctggacatggcg
ggacgactgctctcataggctcacaggagctgtggttgcctgcacgagac
ccgcacagatcaagtcactcaacacgctagcagtaaagcatggagtggct
cctaagcccccatccctaacagaggcactattgatagttgatggcttttg
gcagaaggagagtgtgttttctttaggtgtggccactgataggtcaagca
tgtcccagtgagtgatcctattccggtatgcatgtgggcagtacatattg
gacttcctgggttgaagcaaataaataagagaggacaggaagttgggagg
gagtggagaagtggagatggatctgg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr17_52489654_52490491
seq2: B6Ng01-066N17.b_48_886 (reverse)

seq1  AAAAAACAAACAAACAAACAAA-CAAACAAAAACAACAACAACGAAAACA  49
      || |||||||| |||||||||| ||||||||| | ||| ||||||| |||
seq2  AATAAACAAAC-AACAAACAAACCAAACAAAATCTACATCAACGAATACA  49

seq1  AAAC-AAAACCAAAAAAAATCTGTAGAGAGTTTTTCCAAGACCAATTCTC  98
      |||| ||||||||||||||| |||||||||||||||||||||||||||||
seq2  AAACAAAAACCAAAAAAAATTTGTAGAGAGTTTTTCCAAGACCAATTCTC  99

seq1  AAACTGTGAGAAAAAGAGGACATACACACACACACACACACACACACACA  148
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACTGTGAGAAAAAGAGGACATACACACACACACACACACACACACACA  149

seq1  CACAGAGAGACAGAGAGAGAGAAAGAGAGAGACAAAGACAGGGAGACAGA  198
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACAGAGAGACAGAGAGAGAGAAAGAGAGAGACAAAGACAGGGAGACAGA  199

seq1  GAAAGAGAGAGAGACAGAGAGAGGCAGAGAGACAGAGAGACAGAGAGACA  248
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAAGAGAGAGAGACAGAGAGAGGCAGAGAGACAGAGAGACAGAGAGACA  249

seq1  GAGACAGAGAGACAGAGACAGAGAGAGAGACAGAGACAGAGAGAGAGAGA  298
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGACAGAGAGACAGAGACAGAGAGAGAGACAGAGACAGAGAGAGAGAGA  299

seq1  GAGACAGAGAGACAGAGAGAGATTGAATATCCTAAAATATTCCAAATACA  348
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGACAGAGAGACAGAGAGAGATTGAATATCCTAAAATATTCCAAATACA  349

seq1  CTTGAGAAACACTTGGCTACATTTAAACTTATCAACCCAGTCATGTGACT  398
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTGAGAAACACTTGGCTACATTTAAACTTATCAACCCAGTCATGTGACT  399

seq1  AGAGAAAGCCTTTGACAACTAACTCTTTTCTGAGAACCTTAGCATTCCTG  448
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGAAAGCCTTTGACAACTAACTCTTTTCTGAGAACCTTAGCATTCCTG  449

seq1  TCAAATGGTTCCTAGGAGCTGGTAATATTCAAACTGTCTAAATCTGAAGG  498
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAAATGGTTCCTAGGAGCTGGTAATATTCAAACTGTCTAAATCTGAAGG  499

seq1  CAGTTCCAGAGATAGCAAGAAAGGTGGGCAGGAAGCAGACCCAAGTTCAC  548
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGTTCCAGAGATAGCAAGAAAGGTGGGCAGGAAGCAGACCCAAGTTCAC  549

seq1  TGTTATTCTACCAGATGAAGAGAGAGCTTCTTGTAGTGTCAGAGAGCTTG  598
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTATTCTACCAGATGAAGAGAGAGCTTCTTGTAGTGTCAGAGAGCTTG  599

seq1  TTGAATGGAAACAGTCAGAGATGGTGCTCACCAGCAAACCAATGTGAAGG  648
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGAATGGAAACAGTCAGAGATGGTGCTCACCAGCAAACCAATGTGAAGG  649

seq1  AGCAAAGCTCCAACAGATTCTTCTGTCAATGTCCTGAGACTTTCTGGCCA  698
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCAAAGCTCCAACAGATTCTTCTGTCAATGTCCTGAGACTTTCTGGCCA  699

seq1  CTGGAAGCATTGCATCATTAAAGGAAAAGCCCATCTAGCACCAGCAGACA  748
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGAAGCATTGCATCATTAAAGGAAAAGCCCATCTAGCACCAGCAGACA  749

seq1  GAGAATATCAAATTATTATTTCAGTCTCCAAGGGTACATTGAAAAGTAAA  798
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGAATATCAAATTATTATTTCAGTCTCCAAGGGTACATTGAAAAGTAAA  799

seq1  AAAGCATGCAGAGTGGGGTACTTTCTATGTGTTAGAATTC  838
      ||||||||||||||||||||||||||||||||||||||||
seq2  AAAGCATGCAGAGTGGGGTACTTTCTATGTGTTAGAATTC  839

seq1: chr17_52350024_52350455
seq2: B6Ng01-066N17.g_68_499

seq1  GAATTCAGAGCCATCTGGGCAACTTATTCTTTCTCAAAATAAAATGTGCA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAGAGCCATCTGGGCAACTTATTCTTTCTCAAAATAAAATGTGCA  50

seq1  AAGGAATCTGGGAGATTTTGGAGAACTGGAACAAAATACTGTCTCTGGAC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGAATCTGGGAGATTTTGGAGAACTGGAACAAAATACTGTCTCTGGAC  100

seq1  ATGGCGGGACGACTGCTCTCATAGGCTCACAGGAGCTGTGGTTGCCTGCA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGGCGGGACGACTGCTCTCATAGGCTCACAGGAGCTGTGGTTGCCTGCA  150

seq1  CGAGACCCGCACAGATCAAGTCACTCAACACGCTAGCAGTAAAGCATGGA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGAGACCCGCACAGATCAAGTCACTCAACACGCTAGCAGTAAAGCATGGA  200

seq1  GTGGCTCCTAAGCCCCCATCCCTAACAGAGGCACTATTGATAGTTGATGG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGGCTCCTAAGCCCCCATCCCTAACAGAGGCACTATTGATAGTTGATGG  250

seq1  CTTTTGGCAGAAGGAGAGTGTGTTTTCTTTAGGTGTGGCCACTGATAGGT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTTGGCAGAAGGAGAGTGTGTTTTCTTTAGGTGTGGCCACTGATAGGT  300

seq1  CAAGCATGTCCCAGTGAGTGATCCTATTCCGGTATGCATGTGGGCAGTAC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAGCATGTCCCAGTGAGTGATCCTATTCCGGTATGCATGTGGGCAGTAC  350

seq1  ATATTGGACTTCCTGGGTTGAAGCAAATAAATAAGAGAGGACAGGAAGTT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATTGGACTTCCTGGGTTGAAGCAAATAAATAAGAGAGGACAGGAAGTT  400

seq1  GGGAGGGAGTGGAGAAGTGGAGATGGATCTGG  432
      ||||||||||||||||||||||||||||||||
seq2  GGGAGGGAGTGGAGAAGTGGAGATGGATCTGG  432