BAC Information

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BAC

Clone NameB6Ng01-066N18
Chromosome17 (Build37)
Map Location 59,143,562 - 59,267,920
singlet/doubletdoublet
Overlap geneNudt12, 4930505H01Rik
Upstream geneCntnap5c, LOC620408, EG545216, LOC668648, 2610034M16Rik
Downstream geneLOC100043537, LOC100043542
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-066N18.bB6Ng01-066N18.g
ACCDH885917DH885918
length9021,068
definitionDH885917|Mus musculus domesticus DNA, BAC clone: B6Ng01-066N18, 5' end.DH885918|Mus musculus domesticus DNA, BAC clone: B6Ng01-066N18, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(59,143,562 - 59,144,463)(59,266,844 - 59,267,920)
sequence
gaattccaaataataaaaagattttaagtaaaatgtatttgggtgcttaa
aaatttttaaatttattaacagtacttaatgagacatttttaaatataca
tttatttcaaacagattgatgcttcccctatacacaggttgttgtgttta
ctctaaggagtacaccgtgaaaagaagtcctagactagtggaagagattt
gtcaaggcacaataacagtacatgccaacatccaatgttaacacaggcta
aaatgacggaacaaaatagacaagggacacaaatatctacaaggaaaaga
acaggatcactggatgtgtgatgggcgttttacaatgatgttccatcaga
agagcaatgaacctcatgcagaaacagcaccctctctcttacctctctga
gcacaaagtacaaagtctggtaactgaaagccccatgctgggcctggtgg
ccttgcctataataatcgcagcacttgggcagccatggcgcgagggtcgt
agaaagccagaagctcatctaggttactaacagatgaaagactcagtcga
atgccaaagggtgaaaattccagggtggtaaaagctacggaataatgtac
cattcacgtgctgctgctgctgctgctggtgggagctaggggaacacctc
agagaggcacttgcaacatttagtaaagtttaatgtgctaatctatgcag
tgacaactctatctacttaaataacacttgcaaacattcataaagagatg
aacaaaaatactcattacagtgctcttttcaatagccaaaattttgatat
aaaatatccacagcagaacacatgaatatatatatacatatctctgtgtg
tacatatatatacatatatatatgtgtatatatatatatgtatatatatg
gg
gaattcaaaacatatttaaaaatcataaaaagaggtttaaagaaattgac
cggaaatgaaggtcaccctcctgctagtccttggctctttctaaatattt
aaatcactttaaggccagcatcctgctcaggtccgcggcaatttgtccta
tgatcagttataatgagtgttttccaaatcccagacgtataatttcctct
ctgatttattctctccagtctgcagtacaacagacaagaactattcatgt
cctctccttttctcctttaaaagactgagagagagttagggttagatgga
acagtgggtgcatgtagggcaggcttgtgtggatggagcccctgggtctt
tctcacctgcctttacttagatttccagaggttacatcacaaaaacctga
cagggtgcttgtaaaaatggagccattattatccacattcttttcttccc
ctacagcccttgttctctttgaaaataaagagtaggttctagaaagggag
tgttacaaaatagaacccccatatttcacagcttgacattcagaattctg
agacagataacacaaatagcatttcacatgacagactcgcataatgactg
tacctcagaactttgggaggcaggctctaagcacagaaagtttaaggcat
gtccaaagccaatctaaacttctctgtcataaattatattgaaaatgtta
aacagaaagcaccagtcactgaccaatcaaaaattatcctctatatcaat
ggtttgaatatagcttcaattgtgttccgggggtcggggaggcgaggagt
ataaagctgtttaaatttgcagatattaatactagggcttttcaaagaat
attttaaaggtaaatcaataatagaatctgggccatttccttgtgtaggg
caaatgggttatatgcagttttatgtgaaggtgtttagggacaggtggga
aaccatgggaatggtggaattaataaggaacctgaggctttgtaagaagc
cagtaaatactgaaagtaatagaaatatgtaatcatgccagagacctctc
tgaatttttacttgagca
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr17_59143562_59144463
seq2: B6Ng01-066N18.b_46_947

seq1  GAATTCCAAATAATAAAAAGATTTTAAGTAAAATGTATTTGGGTGCTTAA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCAAATAATAAAAAGATTTTAAGTAAAATGTATTTGGGTGCTTAA  50

seq1  AAATTTTTAAATTTATTAACAGTACTTAATGAGACATTTTTAAATATACA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATTTTTAAATTTATTAACAGTACTTAATGAGACATTTTTAAATATACA  100

seq1  TTTATTTCAAACAGATTGATGCTTCCCCTATACACAGGTTGTTGTGTTTA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTATTTCAAACAGATTGATGCTTCCCCTATACACAGGTTGTTGTGTTTA  150

seq1  CTCTAAGGAGTACACCGTGAAAAGAAGTCCTAGACTAGTGGAAGAGATTT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTAAGGAGTACACCGTGAAAAGAAGTCCTAGACTAGTGGAAGAGATTT  200

seq1  GTCAAGGCACAATAACAGTACATGCCAACATCCAATGTTAACACAGGCTA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCAAGGCACAATAACAGTACATGCCAACATCCAATGTTAACACAGGCTA  250

seq1  AAATGACGGAACAAAATAGACAAGGGACACAAATATCTACAAGGAAAAGA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATGACGGAACAAAATAGACAAGGGACACAAATATCTACAAGGAAAAGA  300

seq1  ACAGGATCACTGGATGTGTGATGGGCGTTTTACAATGATGTTCCATCAGA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGGATCACTGGATGTGTGATGGGCGTTTTACAATGATGTTCCATCAGA  350

seq1  AGAGCAATGAACCTCATGCAGAAACAGCACCCTCTCTCTTACCTCTCTGA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGCAATGAACCTCATGCAGAAACAGCACCCTCTCTCTTACCTCTCTGA  400

seq1  GCACAAAGTACAAAGTCTGGTAACTGAAAGCCCCATGCTGGGCCTGGTGG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCACAAAGTACAAAGTCTGGTAACTGAAAGCCCCATGCTGGGCCTGGTGG  450

seq1  CCTTGCCTATAATAATCGCAGCACTTGGGCAGCCATGGCGCGAGGGTCGT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTGCCTATAATAATCGCAGCACTTGGGCAGCCATGGCGCGAGGGTCGT  500

seq1  AGAAAGCCAGAAGCTCATCTAGGTTACTAACAGATGAAAGACTCAGTCGA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAAGCCAGAAGCTCATCTAGGTTACTAACAGATGAAAGACTCAGTCGA  550

seq1  ATGCCAAAGGGTGAAAATTCCAGGGTGGTAAAAGCTACGGAATAATGTAC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGCCAAAGGGTGAAAATTCCAGGGTGGTAAAAGCTACGGAATAATGTAC  600

seq1  CATTCACGTGCTGCTGCTGCTGCTGCTGGTGGGAGCTAGGGGAACACCTC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTCACGTGCTGCTGCTGCTGCTGCTGGTGGGAGCTAGGGGAACACCTC  650

seq1  AGAGAGGCACTTGCAACATTTAGTAAAGTTTAATGTGCTAATCTATGCAG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGAGGCACTTGCAACATTTAGTAAAGTTTAATGTGCTAATCTATGCAG  700

seq1  TGACAACTCTATCTACTTAAATAACACTTGCAAACATTCATAAAGAGATG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGACAACTCTATCTACTTAAATAACACTTGCAAACATTCATAAAGAGATG  750

seq1  AACAAAAATACTCATTACAGTGCTCTTTTCAATAGCCAAAATTTTGATAT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACAAAAATACTCATTACAGTGCTCTTTTCAATAGCCAAAATTTTGATAT  800

seq1  AAAATATCCACAGCAGAACACATGAATATATATATACATATCTCTGTGTG  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAATATCCACAGCAGAACACATGAATATATATATACATATCTCTGTGTG  850

seq1  TACATATATATACATATATATATGTGTATATATATATATGTATATATATG  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACATATATATACATATATATATGTGTATATATATATATGTATATATATG  900

seq1  GG  902
      ||
seq2  GG  902

seq1: chr17_59266844_59267920
seq2: B6Ng01-066N18.g_70_1137 (reverse)

seq1  TGCTCAAGTAAAAAATTCAAGAGAGGTTTCTCTGCATGATTTACATAATT  50
      ||||||||| |||||||| |||||||| |||  |||||| |||||| |||
seq2  TGCTCAAGT-AAAAATTC-AGAGAGGTCTCT-GGCATGA-TTACAT-ATT  45

seq1  TCTTATTAACCTTTCAGTATTTACTTGGCTTCTTACAAAGCCTCAGGTTC  100
      || |||||  |||||||||||||| |||||||||||||||||||||||||
seq2  TC-TATTA--CTTTCAGTATTTAC-TGGCTTCTTACAAAGCCTCAGGTTC  91

seq1  CTTATTAATTCCACCATTCCCATGGTTTCCCACCTGTCCCTAAACACCTT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTATTAATTCCACCATTCCCATGGTTTCCCACCTGTCCCTAAACACCTT  141

seq1  CACATAAAACTGCATATAACCCATTTGCCCTACACAAGGAAATGGCCCAG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACATAAAACTGCATATAACCCATTTGCCCTACACAAGGAAATGGCCCAG  191

seq1  ATTCTATTATTGATTTACCTTTAAAATATTCTTTGAAAAGCCCTAGTATT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTCTATTATTGATTTACCTTTAAAATATTCTTTGAAAAGCCCTAGTATT  241

seq1  AATATCTGCAAATTTAAACAGCTTTATACTCCTCGCCTCCCCGACCCCCG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATATCTGCAAATTTAAACAGCTTTATACTCCTCGCCTCCCCGACCCCCG  291

seq1  GAACACAATTGAAGCTATATTCAAACCATTGATATAGGGGATAATTTTTG  350
      ||||||||||||||||||||||||||||||||||||| ||||||||||||
seq2  GAACACAATTGAAGCTATATTCAAACCATTGATATAGAGGATAATTTTTG  341

seq1  ATTGGTCAGTGACTGGTGCTTTCTGTTTAACATTTTCAATATAATTTATG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTGGTCAGTGACTGGTGCTTTCTGTTTAACATTTTCAATATAATTTATG  391

seq1  ACAGAGAAGTTTAGATTGGCTTTGGACATGCCTTAAACTTTCTGTGCTTA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGAGAAGTTTAGATTGGCTTTGGACATGCCTTAAACTTTCTGTGCTTA  441

seq1  GAGCCTGCCTCCCAAAGTTCTGAGGTACAGTCATTATGCGAGTCTGTCAT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGCCTGCCTCCCAAAGTTCTGAGGTACAGTCATTATGCGAGTCTGTCAT  491

seq1  GTGAAATGCTATTTGTGTTATCTGTCTCAGAATTCTGAATGTCAAGCTGT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGAAATGCTATTTGTGTTATCTGTCTCAGAATTCTGAATGTCAAGCTGT  541

seq1  GAAATATGGGGGTTCTATTTTGTAACACTCCCTTTCTAGAACCTACTCTT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAATATGGGGGTTCTATTTTGTAACACTCCCTTTCTAGAACCTACTCTT  591

seq1  TATTTTCAAAGAGAACAAGGGCTGTAGGGGAAGAAAAGAATGTGGATAAT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTTTCAAAGAGAACAAGGGCTGTAGGGGAAGAAAAGAATGTGGATAAT  641

seq1  AATGGCTCCATTTTTACAAGCACCCTGTCAGGTTTTTGTGATGTAACCTC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGGCTCCATTTTTACAAGCACCCTGTCAGGTTTTTGTGATGTAACCTC  691

seq1  TGGAAATCTAAGTAAAGGCAGGTGAGAAAGACCCAGGGGCTCCATCCACA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGAAATCTAAGTAAAGGCAGGTGAGAAAGACCCAGGGGCTCCATCCACA  741

seq1  CAAGCCTGCCCTACATGCACCCACTGTTCCATCTAACCCTAACTCTCTCT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAGCCTGCCCTACATGCACCCACTGTTCCATCTAACCCTAACTCTCTCT  791

seq1  CAGTCTTTTAAAGGAGAAAAGGAGAGGACATGAATAGTTCTTGTCTGTTG  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGTCTTTTAAAGGAGAAAAGGAGAGGACATGAATAGTTCTTGTCTGTTG  841

seq1  TACTGCAGACTGGAGAGAATAAATCAGAGAGGAAATTATACGTCTGGGAT  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACTGCAGACTGGAGAGAATAAATCAGAGAGGAAATTATACGTCTGGGAT  891

seq1  TTGGAAAACACTCATTATAACTGATCATAGGACAAATTGCCGCGGACCTG  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGGAAAACACTCATTATAACTGATCATAGGACAAATTGCCGCGGACCTG  941

seq1  AGCAGGATGCTGGCCTTAAAGTGATTTAAATATTTAGAAAGAGCCAAGGA  1000
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCAGGATGCTGGCCTTAAAGTGATTTAAATATTTAGAAAGAGCCAAGGA  991

seq1  CTAGCAGGAGGGTGACCTTCATTTCCGGTCAATTTCTTTAAACCTCTTTT  1050
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAGCAGGAGGGTGACCTTCATTTCCGGTCAATTTCTTTAAACCTCTTTT  1041

seq1  TATGATTTTTAAATATGTTTTGAATTC  1077
      |||||||||||||||||||||||||||
seq2  TATGATTTTTAAATATGTTTTGAATTC  1068