BAC Information

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BAC

Clone NameB6Ng01-066N21
Chromosome17 (Build37)Y (Build37)
Map Location 72,582,592 - 72,583,627573,406 - 573,550
singlet/doubletsingletsinglet
Overlap geneAlk
Upstream geneLpin2, Emilin2, LOC100043644, Smchd1, LOC100043879, Ndc80, LOC668740, Spdya, LOC623451, Wdr43, 4632412N22Rik, BC027072, Clip4
Downstream geneYpel5, Lbh, Lycat, LOC668709
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-066N21.bB6Ng01-066N21.g
ACCDH885923DH885924
length1,032255
definitionDH885923|Mus musculus domesticus DNA, BAC clone: B6Ng01-066N21, 5' end.DH885924|Mus musculus domesticus DNA, BAC clone: B6Ng01-066N21, 3' end.
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(72,582,592 - 72,583,627)(573,406 - 573,550)
sequence
ttttagtcctagcacatagcacatgcccataaacaacttctcaactgcac
tgaaaggcaacataggtttggggttgtgaaggaactcatgcatttatata
atagtttaaaatagaatatttaacaggatgctatatactttcctgtctac
aagcagtcccactacatacaacgtgggcagggtatatttacactctatgt
atatccagtacttagcacaccttgagttcagagacagcgaccctgatctg
gagccaaagaaagttcctgaacaactggccacacacagctgcttgaaata
gtgttgaagtccccaacagaatgtcaacagttcctttagcaatcttcaga
gtacctcctgtcatttgtgacctcactctttaggtagctttggagaccct
agaaaccaatggtttttagattttaagtaagagtgattttaaagaagtgg
aggggagaacagatccccaactcctacacagtagagatgcacagcctgaa
agcagcgtcacagcatatatagagatcaagaattaggacccagttctaat
atgttctgctttctaatctttgttgtctctccacatgcttaatatttgcg
atcaccccttaatgaggttctgtatcttcattttgtgggggtatatttct
gttaatttatcaccttcaatcccaggagaaatgtgtttcagcaagacatg
gataaattattgtaaagtacatttatttagcacaatctaattatcgcatc
attcagtaaaagtgaatgaataaatcacaaatgaagagtaatgatggtgg
aattgtcacgcacatgtttatgatgtggggaaggaggtgggaacttgggt
acacatgtatgaatatgcgtttgttgggctttccaacatgtttttctcat
gtggctttgatctcatattgatttatctggacagagatgtgatggtactg
tctaatggtggtcatttaagggcaatggtggtattaaacctttgtaatgg
tgctaatcacaatttcagctggattagatatc
actgtcccagttctccaagagaactgccatgtgtagggacttatgttgca
gagtggtatacttgtctggtccacaaatctgaggatagaaagtatgtgct
cccccccccccagagctcctgtctctagctgcatatgtagcagaagatgg
cctagtcggccatcattgggaagagaggccccttggtctagcaagcttta
tatgccccagtacaggggaacaccagggccaagaactgggagtgggtggg
caggg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr17_72582592_72583627
seq2: B6Ng01-066N21.b_56_1087

seq1  TTTTAGTCCTAGCACATAGCACATGCCCATAAACAACTTCTCAACTGCAC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTAGTCCTAGCACATAGCACATGCCCATAAACAACTTCTCAACTGCAC  50

seq1  TGAAAGGCAACATAGGTTTGGGGTTGTGAAGGAACTCATGCATTTATATA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAAAGGCAACATAGGTTTGGGGTTGTGAAGGAACTCATGCATTTATATA  100

seq1  ATAGTTTAAAATAGAATATTTAACAGGATGCTATATACTTTCCTGTCTAC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAGTTTAAAATAGAATATTTAACAGGATGCTATATACTTTCCTGTCTAC  150

seq1  AAGCAGTCCCACTACATACAACGTGGGCAGGGTATATTTACACTCTATGT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGCAGTCCCACTACATACAACGTGGGCAGGGTATATTTACACTCTATGT  200

seq1  ATATCCAGTACTTAGCACACCTTGAGTTCAGAGACAGCGACCCTGATCTG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATCCAGTACTTAGCACACCTTGAGTTCAGAGACAGCGACCCTGATCTG  250

seq1  GAGCCAAAGAAAGTTCCTGAACAACTGGCCACACACAGCTGCTTGAAATA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGCCAAAGAAAGTTCCTGAACAACTGGCCACACACAGCTGCTTGAAATA  300

seq1  GTGTTGAAGTCCCCAACAGAATGTCAACAGTTCCTTTAGCAATCTTCAGA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTTGAAGTCCCCAACAGAATGTCAACAGTTCCTTTAGCAATCTTCAGA  350

seq1  GTACCTCCTGTCATTTGTGACCTCACTCTTTAGGTAGCTTTGGAGACCCT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTACCTCCTGTCATTTGTGACCTCACTCTTTAGGTAGCTTTGGAGACCCT  400

seq1  AGAAACCAATGGTTTTTAGATTTTAAGTAAGAGTGATTTTAAAGAAGTGG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAACCAATGGTTTTTAGATTTTAAGTAAGAGTGATTTTAAAGAAGTGG  450

seq1  AGGGGAGAACAGATCCCCAACTCCTACACAGTAGAGATGCACAGCCTGAA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGGGAGAACAGATCCCCAACTCCTACACAGTAGAGATGCACAGCCTGAA  500

seq1  AGCAGCGTCACAGCATATATAGAGATCAAGAATTAGGACCCAGTTCTAAT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCAGCGTCACAGCATATATAGAGATCAAGAATTAGGACCCAGTTCTAAT  550

seq1  ATGTTCTGCTTTCTAATCTTTGTTGTCTCTCCACATGCTTAATATTTGCG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTTCTGCTTTCTAATCTTTGTTGTCTCTCCACATGCTTAATATTTGCG  600

seq1  ATCACCCCTTAATGAGGTTCTGTATCTTCATTTTGTGGGGGTATATTTCT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCACCCCTTAATGAGGTTCTGTATCTTCATTTTGTGGGGGTATATTTCT  650

seq1  GTTAATTTATCACCTTCAATCCCAGGAGAAATGTGTTTCAGCAAGACATG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTAATTTATCACCTTCAATCCCAGGAGAAATGTGTTTCAGCAAGACATG  700

seq1  GATAAATTATTGTAAAGTACATTTATTTAGCACAATCTAATTATCGCATC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATAAATTATTGTAAAGTACATTTATTTAGCACAATCTAATTATCGCATC  750

seq1  ATTCAGTAAAAGTGAATGAATAAATCACAAATGAAGAGTAATGATGGTGG  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTCAGTAAAAGTGAATGAATAAATCACAAATGAAGAGTAATGATGGTGG  800

seq1  AATTGTCACGCACATGTTTATGATGTGGGGAAGGAGGTGGGAACTTGGGT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTGTCACGCACATGTTTATGATGTGGGGAAGGAGGTGGGAACTTGGGT  850

seq1  ACACATGTATGAATATGCGTGTGTTGGGCTTTCCAACATGTTTTTCTCAT  900
      |||||||||||||||||||| |||||||||||||||||||||||||||||
seq2  ACACATGTATGAATATGCGTTTGTTGGGCTTTCCAACATGTTTTTCTCAT  900

seq1  GTGGCTTTTGATCTCATATGGA-TTATCTGGACAGAGATGTTGATGGCTA  949
      ||||| ||||||||||||| || ||||||||||||||||| |||||| ||
seq2  GTGGC-TTTGATCTCATATTGATTTATCTGGACAGAGATG-TGATGG-TA  947

seq1  CTGTCTAAT-GTGGTCATTTTAAGGGGCAATGTGGCTATTAAACCTTTGT  998
      ||||||||| ||||||||||  | ||||||||  | ||||||||||||||
seq2  CTGTCTAATGGTGGTCATTT--AAGGGCAATGGTGGTATTAAACCTTTGT  995

seq1  AATGTGGCTAGTCACAA-TTCAGCTGTATTATAGATATC  1036
      ||||  |||| |||||| |||||||| ||  ||||||||
seq2  AATGGTGCTAATCACAATTTCAGCTGGAT--TAGATATC  1032

seq1: chrY_573406_573550
seq2: B6Ng01-066N21.g_184_328

seq1  CAGAGCTCATGTCTCTAGCTGCATATGTATCAGAAGATGGCCTAGTTGGC  50
      |||||||| |||||||||||||||||||| |||||||||||||||| |||
seq2  CAGAGCTCCTGTCTCTAGCTGCATATGTAGCAGAAGATGGCCTAGTCGGC  50

seq1  CATCATTGGGAAGAGAGGCCCCTTGGTCTTGCAAACTTTATATGCCCCAG  100
      ||||||||||||||||||||||||||||| |||| |||||||||||||||
seq2  CATCATTGGGAAGAGAGGCCCCTTGGTCTAGCAAGCTTTATATGCCCCAG  100

seq1  TACAGGGGAACACCAGGGCCAAGAAGTGGGAGAAGGTGGGTAGGG  145
      ||||||||||||||||||||||||| ||||||  |||||| ||||
seq2  TACAGGGGAACACCAGGGCCAAGAACTGGGAGTGGGTGGGCAGGG  145