BAC Information

Click to search

BAC

Clone NameB6Ng01-066O05
Chromosome17 (Build37)
Map Location 58,508,586 - 58,589,790
singlet/doubletdoublet
Overlap geneCntnap5c
Upstream geneEmr1, EG224916, LOC674419
Downstream geneLOC620408, EG545216, LOC668648, 2610034M16Rik, Nudt12, 4930505H01Rik, LOC100043537
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-066O05.bB6Ng01-066O05.g
ACCDH885939DH885940
length1,1311,083
definitionDH885939|Mus musculus domesticus DNA, BAC clone: B6Ng01-066O05, 5' end.DH885940|Mus musculus domesticus DNA, BAC clone: B6Ng01-066O05, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(58,508,586 - 58,509,744)(58,588,678 - 58,589,790)
sequence
gaattctctgaaccagagagaggtgctgcccactgtggagatgggtcttt
ccatctcaattaactcagtttaaaactccctcacagacacacccatgggt
ttatctcttggtaatcatatcttgtcaattgactttgagtaaaatctatc
acaatggtgatcttcatactagtccacagctcttgagaactgccccactc
ccaaggccccacactaagccttgaatttgctcagtattcctgtttggggt
ttcttacctgcttccaccctctgccccccagagactgtggtctctctgtt
atcctccttacccacactcttcttgtcactaccactgatgcacagctctt
tttgttctgcatttattccatgcatattttactctataatacttttcagt
agtgcattgcaaacaagtgcagaagggagagacttggattcctttcactg
atttttaaaattcatacatttcctttcagttcctgtgataaaataccaca
aggaaaagtaacttgtgaaatacctgacttaatctgggttacaccttcat
ggggacaaaagtctgtcatcttgttagcaagctgggaaggcagggcatca
ggagtaggaagtggctaaatcacactgactctatacccaggaagcaaaag
gagagcaggaagtggagcaaagctataacatttgaaccttgcttctagta
cttcttcctgaaagctccacttctgaagttccatggctttcaaaataaca
gcaccatgtgggaattgagtgatcacatataacagcccatgggagacatc
tcccattaaaaacaccacagacaccattctgatcttccctagactgaggt
ctttttcaggtatgagatcgtggtatgaagactgaagtggatgtagacaa
ggtgggacagtagatcacaccatatattgttcaagttagtgtatttcaac
agaatctcttttttcccttctcatctgtttgtttgtttacactgtggatc
tgctgcactatccaggaaattgtttttatgagtattagggagctaagagg
agtgaaactaacaatgagctccattatggcggtactgatctcatcgaaat
tgctgacacgagttgagtcttgagtcatttc
gaattcaggaaaattagccagtaaagtacaatttggtgctgcaacaagtt
gggctatgtaaagatctcaggagtttcaaataacaaatgtatcgatagac
actaagaaaattctgaggaagaaataaaggtttgactatgagaagcaagt
cacatgatttctgcactcaaggaagcagtactcccagaagggtcctgaac
ttattggcatatggcatcatcatcaggaactccagaaactgctgtttcag
tgatgcccatgtggaacctgactctgcaatgggaaatgaggaaccctact
tcatttgtatatgtaacttccaaattaagatttaagactaaatatctaca
tcagagcctctggtttcttagaaaacaggataactgtaatcactagacag
cacctcacttctagatgccaagtctagttctgtcctcaagggaaagtctg
taagacatgaaaagtaacaggcaagatatatatgaaaatcaaaatagtgg
accctgagcacaatggaaaaaggatgaagctgccattccagtcctcactc
ccactcaccattccctgagtcaacctctgactttttttaaatttcaaaat
gcagaaacttggccttgattactgtgatggtttgtttgtccttggaccag
ggagtggcaccatctgaaggtgtggccttgttgggataggtgtgacctgg
ttgaaatgggtgtgtcactgtgggtgtgggtataagatcctcaccctagt
tgcctggaagtcagtcttctactagcagcctttggatgaagacatagaac
tctcagctcctcctgcaccatgcctgcctggatactgccatgcttccacc
ttgatgataatggactgaacctctgaacctgtaagccagccccaattaat
gttgttttttatagacttgccttggtcatggtgtctgttcatagcataac
cctactagacattactatagataccttatatatttgagtttaccagtcaa
caaaataatggttatctagttgtgtttagagtcaaacttgggaagaagtt
agcaactagaaagctacttcgtcctcgtcttca
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr17_58508586_58509744
seq2: B6Ng01-066O05.b_49_1179

seq1  GAATTCTCTGAACCAGAGAGAGGTGCTGCCCACTGTGGAGATGGGTCTTT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTCTGAACCAGAGAGAGGTGCTGCCCACTGTGGAGATGGGTCTTT  50

seq1  CCATCTCAATTAACTCAGTTTAAAACTCCCTCACAGACACACCCATGGGT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCATCTCAATTAACTCAGTTTAAAACTCCCTCACAGACACACCCATGGGT  100

seq1  TTATCTCTTGGTAATCATATCTTGTCAATTGACTTTGAGTAAAATCTATC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATCTCTTGGTAATCATATCTTGTCAATTGACTTTGAGTAAAATCTATC  150

seq1  ACAATGGTGATCTTCATACTAGTCCACAGCTCTTGAGAACTGCCCCACTC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAATGGTGATCTTCATACTAGTCCACAGCTCTTGAGAACTGCCCCACTC  200

seq1  CCAAGGCCCCACACTAAGCCTTGAATTTGCTCAGTATTCCTGTTTGGGGT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAAGGCCCCACACTAAGCCTTGAATTTGCTCAGTATTCCTGTTTGGGGT  250

seq1  TTCTTACCTGCTTCCACCCTCTGCCCCCCAGAGACTGTGGTCTCTCTGTT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTTACCTGCTTCCACCCTCTGCCCCCCAGAGACTGTGGTCTCTCTGTT  300

seq1  ATCCTCCTTACCCACACTCTTCTTGTCACTACCACTGATGCACAGCTCTT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCCTCCTTACCCACACTCTTCTTGTCACTACCACTGATGCACAGCTCTT  350

seq1  TTTGTTCTGCATTTATTCCATGCATATTTTACTCTATAATACTTTTCAGT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGTTCTGCATTTATTCCATGCATATTTTACTCTATAATACTTTTCAGT  400

seq1  AGTGCATTGCAAACAAGTGCAGAAGGGAGAGACTTGGATTCCTTTCACTG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTGCATTGCAAACAAGTGCAGAAGGGAGAGACTTGGATTCCTTTCACTG  450

seq1  ATTTTTAAAATTCATACATTTCCTTTCAGTTCCTGTGATAAAATACCACA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTTTAAAATTCATACATTTCCTTTCAGTTCCTGTGATAAAATACCACA  500

seq1  AGGAAAAGTAACTTGTGAAATACCTGACTTAATCTGGGTTACACCTTCAT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGAAAAGTAACTTGTGAAATACCTGACTTAATCTGGGTTACACCTTCAT  550

seq1  GGGGACAAAAGTCTGTCATCTTGTTAGCAAGCTGGGAAGGCAGGGCATCA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGGACAAAAGTCTGTCATCTTGTTAGCAAGCTGGGAAGGCAGGGCATCA  600

seq1  GGAGTAGGAAGTGGCTAAATCACACTGACTCTATACCCAGGAAGCAAAAG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAGTAGGAAGTGGCTAAATCACACTGACTCTATACCCAGGAAGCAAAAG  650

seq1  GAGAGCAGGAAGTGGAGCAAAGCTATAACATTTGAACCTTGCTTCTAGTA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGAGCAGGAAGTGGAGCAAAGCTATAACATTTGAACCTTGCTTCTAGTA  700

seq1  CTTCTTCCTGAAAGCTCCACTTCTGAAGTTCCATGGCTTTCAAAATAACA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCTTCCTGAAAGCTCCACTTCTGAAGTTCCATGGCTTTCAAAATAACA  750

seq1  GCACCATGTGGGAATTGAGTGATCACATATAACAGCCCATGGGAGACATC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCACCATGTGGGAATTGAGTGATCACATATAACAGCCCATGGGAGACATC  800

seq1  TCCCATTAAAAACACCACAGACACCATTCTGATCTTCCCTAGACTGAGGT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCCATTAAAAACACCACAGACACCATTCTGATCTTCCCTAGACTGAGGT  850

seq1  CTTTTTCAGGATATGAGATCGTGGATATGAAGACTGAAGTGGATGTAGAC  900
      |||||||||| ||||||||||||| |||||||||||||||||||||||||
seq2  CTTTTTCAGG-TATGAGATCGTGG-TATGAAGACTGAAGTGGATGTAGAC  898

seq1  AAGGTGGGACAGTAGATCACACCATATATTGTTCAAGTTAGTGTATTTCA  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGTGGGACAGTAGATCACACCATATATTGTTCAAGTTAGTGTATTTCA  948

seq1  ACAGAATCTCTTTTTTTCCCTTCTCATCTGTTTGTTTGTTTTACAACTGT  1000
      |||||||||| ||||||||||||||||||||||||||| ||||| |||| 
seq2  ACAGAATCTC-TTTTTTCCCTTCTCATCTGTTTGTTTG-TTTAC-ACTG-  994

seq1  TGAATCTTGCTGCACTATCCAGGAAATTGTTTTTATGAAGTAATTTAGGA  1050
      || ||| |||||||||||||||||||||||||||||| ||||  ||||| 
seq2  TGGATC-TGCTGCACTATCCAGGAAATTGTTTTTATG-AGTA--TTAGG-  1039

seq1  GAGGCTACAGAAGGAGTGAAAACTAAACAATGAGCTCAGTGTAATTGGCA  1100
      || |||| || ||||||| ||||| ||||||||||||  | ||  |||| 
seq2  GA-GCTA-AG-AGGAGTG-AAACT-AACAATGAGCTCCAT-TA--TGGC-  1080

seq1  GTTACTGAGTCTCAGTCAGATATGCTGAACCAGCAGTTTTGAAGTCTTGA  1150
      | |||||| ||||| ||  |  ||||||  ||  ||||    ||||||||
seq2  GGTACTGA-TCTCA-TCGAAATTGCTGA--CACGAGTT---GAGTCTTGA  1123

seq1  GTTCATTTC  1159
      | |||||||
seq2  G-TCATTTC  1131

seq1: chr17_58588678_58589790
seq2: B6Ng01-066O05.g_67_1149 (reverse)

seq1  TGAAGGACGAAGGACGATGTTATGCTTTTCTAGTTTGGCTTAACTCTCTT  50
      |||| |||| ||||||| ||   || |||||||||  || ||||| ||||
seq2  TGAA-GACG-AGGACGAAGT--AGC-TTTCTAGTT--GC-TAACT-TCTT  41

seq1  CCCAAGTTTTTGACTTCTAAACACTAAACTAGATACCCATTTATTTTTTG  100
      ||||||  |||||| |||||||||  ||||||||| ||| |||||||   
seq2  CCCAAG--TTTGAC-TCTAAACAC--AACTAGATAACCA-TTATTTT---  82

seq1  TTTGACTTGGTAAAACTTCAAATATATAAGGTATCTATTAGTAATTGTCT  150
       ||||| |||||||   |||||||||||||||||||| |||||| |||| 
seq2  GTTGAC-TGGTAAA--CTCAAATATATAAGGTATCTA-TAGTAA-TGTC-  126

seq1  TAGTTAGGGTTTTATTGCTATGAACAGACACCATGACCAAGGCAAGTCTT  200
      ||| |||||||    ||||||||||||||||||||||||||||||||| |
seq2  TAG-TAGGGTT---ATGCTATGAACAGACACCATGACCAAGGCAAGTC-T  171

seq1  ATAAAAAACAACATTTAATTGGGGCTGGCTTACAGGTTCAGAGGTTCAGT  250
      ||||||||||||| ||||||||||||||||||||||||||||||||||||
seq2  ATAAAAAACAACA-TTAATTGGGGCTGGCTTACAGGTTCAGAGGTTCAGT  220

seq1  CCATTATCATCAAGGTGGAAGCATGGCAGTATCCAGGCAGGCATGGTGCA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCATTATCATCAAGGTGGAAGCATGGCAGTATCCAGGCAGGCATGGTGCA  270

seq1  GGAGGAGCTGAGAGTTCTATGTCTTCATCCAAAGGCTGCTAGTAGAAGAC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAGGAGCTGAGAGTTCTATGTCTTCATCCAAAGGCTGCTAGTAGAAGAC  320

seq1  TGACTTCCAGGCAACTAGGGTGAGGATCTTATACCCACACCCACAGTGAC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGACTTCCAGGCAACTAGGGTGAGGATCTTATACCCACACCCACAGTGAC  370

seq1  ACACCCATTTCAACCAGGTCACACCTATCCCAACAAGGCCACACCTTCAG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACCCATTTCAACCAGGTCACACCTATCCCAACAAGGCCACACCTTCAG  420

seq1  ATGGTGCCACTCCCTGGTCCAAGGACAAACAAACCATCACAGTAATCAAG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGGTGCCACTCCCTGGTCCAAGGACAAACAAACCATCACAGTAATCAAG  470

seq1  GCCAAGTTTCTGCATTTTGAAATTTAAAAAAAGTCAGAGGTTGACTCAGG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCAAGTTTCTGCATTTTGAAATTTAAAAAAAGTCAGAGGTTGACTCAGG  520

seq1  GAATGGTGAGTGGGAGTGAGGACTGGAATGGCAGCTTCATCCTTTTTCCA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATGGTGAGTGGGAGTGAGGACTGGAATGGCAGCTTCATCCTTTTTCCA  570

seq1  TTGTGCTCAGGGTCCACTATTTTGATTTTCATATATATCTTGCCTGTTAC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTGCTCAGGGTCCACTATTTTGATTTTCATATATATCTTGCCTGTTAC  620

seq1  TTTTCATGTCTTACAGACTTTCCCTTGAGGACAGAACTAGACTTGGCATC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTCATGTCTTACAGACTTTCCCTTGAGGACAGAACTAGACTTGGCATC  670

seq1  TAGAAGTGAGGTGCTGTCTAGTGATTACAGTTATCCTGTTTTCTAAGAAA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGAAGTGAGGTGCTGTCTAGTGATTACAGTTATCCTGTTTTCTAAGAAA  720

seq1  CCAGAGGCTCTGATGTAGATATTTAGTCTTAAATCTTAATTTGGAAGTTA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGAGGCTCTGATGTAGATATTTAGTCTTAAATCTTAATTTGGAAGTTA  770

seq1  CATATACAAATGAAGTAGGGTTCCTCATTTCCCATTGCAGAGTCAGGTTC  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATATACAAATGAAGTAGGGTTCCTCATTTCCCATTGCAGAGTCAGGTTC  820

seq1  CACATGGGCATCACTGAAACAGCAGTTTCTGGAGTTCCTGATGATGATGC  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACATGGGCATCACTGAAACAGCAGTTTCTGGAGTTCCTGATGATGATGC  870

seq1  CATATGCCAATAAGTTCAGGACCCTTCTGGGAGTACTGCTTCCTTGAGTG  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATATGCCAATAAGTTCAGGACCCTTCTGGGAGTACTGCTTCCTTGAGTG  920

seq1  CAGAAATCATGTGACTTGCTTCTCATAGTCAAACCTTTATTTCTTCCTCA  1000
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGAAATCATGTGACTTGCTTCTCATAGTCAAACCTTTATTTCTTCCTCA  970

seq1  GAATTTTCTTAGTGTCTATCGATACATTTGTTATTTGAAACTCCTGAGAT  1050
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTTTCTTAGTGTCTATCGATACATTTGTTATTTGAAACTCCTGAGAT  1020

seq1  CTTTACATAGCCCAACTTGTTGCAGCACCAAATTGTACTTTACTGGCTAA  1100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTACATAGCCCAACTTGTTGCAGCACCAAATTGTACTTTACTGGCTAA  1070

seq1  TTTTCCTGAATTC  1113
      |||||||||||||
seq2  TTTTCCTGAATTC  1083