BAC Information

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BAC

Clone NameB6Ng01-069G21
Chromosome8 (Build37)17 (Build37)
Map Location 60,583,088 - 60,583,18439,130,752 - 39,131,777
singlet/doubletsingletsinglet
Overlap genenone
Upstream geneLOC100040515, Hand2, Scrg1, Sap30, Hmgb2, LOC547012, Galnt7, LOC100040634, LOC100040711
Downstream gene4930431L04Rik, BC030500, LOC665116
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-069G21.bB6Ng01-069G21.g
ACCDH887744DH887745
length9521,037
definitionDH887744|Mus musculus domesticus DNA, BAC clone: B6Ng01-069G21, 5' end.DH887745|Mus musculus domesticus DNA, BAC clone: B6Ng01-069G21, 3' end.
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(60,583,088 - 60,583,184)(39,130,752 - 39,131,777)
sequence
gaattctctgctttggtctgttaccccccttttttaattggattacttgt
tttgatgttttctactttcttattttttattggatattttatttacattt
taaatgttatcctctttcttgtcccccctcctgaaacatccaataccatc
tcctgtcctcctgcttctatgaatgtgaacccccacctacctacccaccc
actcccccttctggccctcacattcccctacactggggcatcaagtgccc
caaaatcaagggcctcttctcccattgatccctgaaaaggccatccctct
gctacatatatggctggagccatggatcccttcatgtgtactccttggtt
gatggtttagaccctgggagctctggttggttgacattgttgttcatctt
acagggtggcaaacccctttagctcatttattcctttctctaactcttcc
attggggacctaggggtcagttcactgattggctgagagtttccaccttt
atatatatcaggctctgacacacactctcaagagacagctataacagact
cctatgaacatatacttcttggaatccacaatagtgtctgtgtttggtga
ctatatgggatggattgccactactttcttgagtactgtattcattttat
ataatgcttttgtcattgcaggcctagtgacaatattttaccagtatttg
gcatttattttctcctattgatagtacaagttggcttaaagtaacttttc
attttcatgaggtttcatttgacaattgttgataatagagcctaagccat
tgttgttctgttcaggaaaatatctcctgtattagttcgctcaagatatt
tcctatcttctgttctattagattagtgtatattgttttcatttgagatc
tttgatccacttgagcttaagtttttgtatggtaatgacataggtctatt
tt
gaattccagaagccaattgttttcatagaccacaaactcaagcagtctca
attaaactgtgtgtgacatctcaattatgatttctattactgtaaggaaa
tactgtgacccaaaaactgaactgagcacagaaagtaattatttggctta
gacttccattcactgcaaatcgtcaaaggaattcagaacaggatctcaaa
cagggctagttcttggagagaggtgataataaagaaacatggagggataa
tattactggtgtgcttctactggcttgtgcaatatgatttcatatacacc
catgacaaactaccttgaaactgaacaatccataatagtctgtcactttg
ccattaatgagtaattaagaaaattattaatagatggataccttagaagc
attttttcaagtgaggttctgtctcagaaatgattagtttatgtgtcatg
ttgcttagccagtaaaacttactacttctttacttgacacacacattgat
attaagccacacttcttattaaccccccaaaaatctcaggctgaatttat
aaataacattaaaattctcattttttctagttgaaacacataaaaatttt
gctcctttactgagaaaatgaccaatcaatttccatcccaacttgaaact
cattcaataagcaaattaactcatgacactactagtgtttttctaacttg
ctagcagacaagattctaacattgctgccctctgaaggagtccatctagc
agctaactcatagggatgcagacaccctcactcaatggagcttgatgtgt
ctcatggacgagtagactatgaaggcaacaggactagaaaataagaggag
tcatcaattctgcacatgttgtattcttggataccaaacaatcaatcaga
atctgaaacacattcaaggagcataccctgggcagatctagactctcctc
acagtgctgctgtttcatgtggccagacactatcagagtatctaaatatg
tgctgtcagagtgtctacagctggcacttcctgttca
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr8_60583088_60583184
seq2: B6Ng01-069G21.b_121_437 (reverse)

seq1  AACAATATCAACCAAACAGAACCCCCAGAGCTCCCAGGGACTAAACCACC  50
      |||||| ||||||||         ||||||||||||||| |||||||| |
seq2  AACAATGTCAACCAA---------CCAGAGCTCCCAGGGTCTAAACCATC  41

seq1  AGCCAAAGA-AATATTTGAAATGTAAATAAATAAAATATCCAATAAAA--  97
      | |||| ||  | |  ||||  |   ||  ||      ||||   | |  
seq2  AACCAAGGAGTACACATGAAGGG---ATCCAT---GGCTCCAGCCATATA  85

seq1  --------------------------------------------------  97
                                                        
seq2  TGTAGCAGAGGGATGGCCTTTTCAGGGATCAATGGGAGAAGAGGCCCTTG  135

seq1  --------------------------------------------------  97
                                                        
seq2  ATTTTGGGGCACTTGATGCCCCAGTGTAGGGGAATGTGAGGGCCAGAAGG  185

seq1  --------------------------------------------------  97
                                                        
seq2  GGGAGTGGGTGGGTAGGTAGGTGGGGGTTCACATTCATAGAAGCAGGAGG  235

seq1  --------------------------------------------------  97
                                                        
seq2  ACAGGAGATGGTATTGGATGTTTCAGGAGGGGGGACAAGAAAGAGGATAA  285

seq1  --------------------------------  97
                                      
seq2  CATTTAAAATGTAAATAAAATATCCAATAAAA  317

seq1: chr17_39130752_39131777
seq2: B6Ng01-069G21.g_67_1103

seq1  GAATTCCAGAAGCCAATTGTTTTCATAGACCACAAACTCAAGCAGTCTCA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCAGAAGCCAATTGTTTTCATAGACCACAAACTCAAGCAGTCTCA  50

seq1  ATTAAACTGTGTGTGACATCTCAATTATGATTTCTATTACTGTAAGGAAA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTAAACTGTGTGTGACATCTCAATTATGATTTCTATTACTGTAAGGAAA  100

seq1  TACTGTGACCCAAAAACTGAACTGAGCACAGAAAGTAATTATTTGGCTTA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACTGTGACCCAAAAACTGAACTGAGCACAGAAAGTAATTATTTGGCTTA  150

seq1  GACTTCCATTCACTGCAAATCGTCAAAGGAATTCAGAACAGGATCTCAAA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACTTCCATTCACTGCAAATCGTCAAAGGAATTCAGAACAGGATCTCAAA  200

seq1  CAGGGCTAGTTCTTGGAGAGAGGTGATAATAAAGAAACATGGAGGGATAA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGGCTAGTTCTTGGAGAGAGGTGATAATAAAGAAACATGGAGGGATAA  250

seq1  TATTACTGGTGTGCTTCTACTGGCTTGTGCAATATGATTTCATATACACC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTACTGGTGTGCTTCTACTGGCTTGTGCAATATGATTTCATATACACC  300

seq1  CATGACAAACTACCTTGAAACTGAACAATCCATAATAGTCTGTCACTTTG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATGACAAACTACCTTGAAACTGAACAATCCATAATAGTCTGTCACTTTG  350

seq1  CCATTAATGAGTAATTAAGAAAATTATTAATAGATGGATACCTTAGAAGC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCATTAATGAGTAATTAAGAAAATTATTAATAGATGGATACCTTAGAAGC  400

seq1  ATTTTTTCAAGTGAGGTTCTGTCTCAGAAATGATTAGTTTATGTGTCATG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTTTTCAAGTGAGGTTCTGTCTCAGAAATGATTAGTTTATGTGTCATG  450

seq1  TTGCTTAGCCAGTAAAACTTACTACTTCTTTACTTGACACACACATTGAT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGCTTAGCCAGTAAAACTTACTACTTCTTTACTTGACACACACATTGAT  500

seq1  ATTAAGCCACACTTCTTATTAACCCCCCAAAAATCTCAGGCTGAATTTAT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTAAGCCACACTTCTTATTAACCCCCCAAAAATCTCAGGCTGAATTTAT  550

seq1  AAATAACATTAAAATTCTCATTTTTTCTAGTTGAAACACATAAAAATTTT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATAACATTAAAATTCTCATTTTTTCTAGTTGAAACACATAAAAATTTT  600

seq1  GCTCCTTTACTGAGAAAATGACCAATCAATTTCCATCCCAACTTGAAACT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTCCTTTACTGAGAAAATGACCAATCAATTTCCATCCCAACTTGAAACT  650

seq1  CATTCAATAAGCAAATTAACTCATGACACTACTAGTGTTTTTCTAACTTG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTCAATAAGCAAATTAACTCATGACACTACTAGTGTTTTTCTAACTTG  700

seq1  CTAGCAGACAAGATTCTAACATTGCTGCCCTCTGAAGGAGTCCATCTAGC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAGCAGACAAGATTCTAACATTGCTGCCCTCTGAAGGAGTCCATCTAGC  750

seq1  AGCTAACTCATAGGGATGCAGACACCCTCACTCAATGGAGCTTGATGTGT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCTAACTCATAGGGATGCAGACACCCTCACTCAATGGAGCTTGATGTGT  800

seq1  CTCATGGACGAGTAGACTATGAAGGCAACAGGACTAGAAAATAAGAAGAG  850
      |||||||||||||||||||||||||||||||||||||||||||||| |||
seq2  CTCATGGACGAGTAGACTATGAAGGCAACAGGACTAGAAAATAAGAGGAG  850

seq1  TCATCAATCCTGCACATGTTGTATTCTTGGAATACAAACAATCAATCAAG  900
      |||||||| ||||||||||||||||||||||   ||||||||||||| ||
seq2  TCATCAATTCTGCACATGTTGTATTCTTGGATACCAAACAATCAATC-AG  899

seq1  AATCTGAAACAACAATCAAGGAGCATACCCTGGGCAGATCTAGACTTCTC  950
      |||||||||| ||| |||||||||||||||||||||||||||||| ||||
seq2  AATCTGAAAC-ACATTCAAGGAGCATACCCTGGGCAGATCTAGAC-TCTC  947

seq1  CTCAACAGTGCTGCTTGGTTTTCATGTGGGCCAGAACAACTAAATCAGAG  1000
      ||| |||||||||||    |||||||| |||||||   |||  |||||||
seq2  CTC-ACAGTGCTGCT---GTTTCATGT-GGCCAGA--CACT--ATCAGAG  988

seq1  TTATCCCAAAATATGTTG------------------------CCTGTTCA  1026
       ||||  || || || ||                        ||||||||
seq2  -TATCTAAATATGTGCTGTCAGAGTGTCTACAGCTGGCACTTCCTGTTCA  1037